Os12g0622500 - Revision history

Xysj2019: /* Labs working on this gene */

2017-02-24T01:01:08Z

‎Labs working on this gene

Xysj2019: /* Annotated Information */

2017-02-24T01:00:47Z

‎Annotated Information

Guangyi: /* Annotated Information */

2016-12-13T11:28:20Z

‎Annotated Information

Guangyi: /* Annotated Information */

2016-12-13T11:27:18Z

‎Annotated Information

Guangyi at 11:22, 13 December 2016

2016-12-13T11:22:46Z

192.168.72.52 at 03:49, 15 May 2015

2015-05-15T03:49:53Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os12g0622500| Description = Spo11/DNA topoisomerase VI, subunit A family protein| Version = NM_001073839.1 GI:115489639 GeneID:4352826| Length =..."

2012-06-21T10:37:50Z

Created page with "{{JaponicaGene| GeneName = Os12g0622500| Description = Spo11/DNA topoisomerase VI, subunit A family protein| Version = NM_001073839.1 GI:115489639 GeneID:4352826| Length =..."

New page

{{JaponicaGene|
GeneName = Os12g0622500|
Description = Spo11/DNA topoisomerase VI, subunit A family protein|
Version = NM_001073839.1 GI:115489639 GeneID:4352826|
Length = 2971 bp|
Definition = Oryza sativa Japonica Group Os12g0622500, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
AP = Chromosome 12:26804459..26807429|
CDS = 26805466..26806881,26806990..26807037|
GCID = <gbrowseImage1>
name=NC_008405:26804459..26807429
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008405:26804459..26807429
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggatgattcaacggatgacgattcgtatcatccaagaaaacactatgcttatgatcgtcaggtttcttcaagcagatggcgtaccagccgcgagtatatcagaggtcccggccccgaaactcatactactgagagtgctcaagatggacaggatccacctgctggagtatattcctatggttatttttctggcagtggtaatgatcctcaagttcaaggacactttgttccggagattcaaaagtacaacccttacgtgattttcaaaggtgaacaactcccggttcctatatgggaactgccagaggagaaggtccaagattttcatgataggtactttattgcaaaagacaagagtcgagttgaagccaggaagactctgaataggttgttagaggggaacatcaatacaattgaaaggggacatggatataaattcaatattccaaaatatacagataacatggagtttaatgaggaagtcaaggtttctctagcaaaagcaggcaagaccataagccgttccttttgcaatgcgaatcagcgggaagttgcatctaggactggctataccattgatctaatagaacggacacttggggctggattgaacatctcgaagagaactgtcttatacacaaacaaggatctgtttggggatcaaagtaaatcagatcaagcgatcaatgacatctgcgctttgacaaatatcagaaggggctctttgggtataatagcagctgaaaaaggaattgtagttggaaacattttcctggaattgacaaatggcaaatcgattagttgttctattggagtgcagataccacacaggcttgaccagatcaaagatgtttgtgttgaaataggttcacgcaacatagagtatattcttgttgtggaaaagcatacaatgttgaattatctactagagatggactatcacaccaataacaactgtataattctgacaggatgtggcatgccaaccctccaaacaagggatttcctcagattcttgaaacaacgcactggactacctgtctttggactttgtgatccagatcctgaaggtataagtattcttgctacgtatgctagagggtcttgcaattcagcatatgacaatttcaatatttccgtgccatctatttgttgggttggattgtcatcctcagacatgataaagttgaatttgtctgagaccaactactcacgtttgtctcgcgaggacaaaactatgttgaagaacctttggcaggacgatttgtccgatgtatggaaacgcagaatcgaagaaatgataagttttgacaagaaggcctcttttgaagctattcatagtttggggtttgattattttgcaaccaatttgcttccggatatgattaacaaagtacgagaaggctatgttcaggttcaagagaaaaaagagcctcaagacactgaagccagtgaggactga</cdnaseq>|
AA = <aaseq>MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTT ESAQDGQDPPAGVYSYGYFSGSGNDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELP EEKVQDFHDRYFIAKDKSRVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNE EVKVSLAKAGKTISRSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDL FGDQSKSDQAINDICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIP HRLDQIKDVCVEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTR DFLRFLKQRTGLPVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSS DMIKLNLSETNYSRLSREDKTMLKNLWQDDLSDVWKRRIEEMISFDKKASFEAIHSLG FDYFATNLLPDMINKVREGYVQVQEKKEPQDTEASED</aaseq>|
DNA = <dnaseqindica>1008..2423#2532..2579#gaggggaatttcttgcctctcgctcagatccgttcctccggcgaaaagcgacggcgactttgttgacgctgcggcctcttcccgaccgcgcagcaaaggtgaatctcctcccttcctttgttcatcctgcggtttcctctctccctcttggctcttgctctcttctctacggttttgatgtgcgcgtgccctgtggtccatttgggtgattttgaatcgggcacgtttggatccttggcaaaccaaatcctagccttgcttcatctccagcgcagtgccttgtgatccgctgggctgctgccttgtcagatcccgccaacattgcgccgctgttctgccagatcttgccgtcgctgccacattgcgcaaagaagccgaaagcccttccaatctggccggccacatgctgttgcatgaagcaactggcagaagatatttgtgtttggaattttggggatacttcaaccgaatgagcgagctatcgactgtcttggactaatgagagaattaaacacattttttaccctacacattgttttgtgactattaatcttcctcaggcacatttagtttcaggtcttcaaccaaacagaaccaactcagatatgcctcatcaggcaacaaacatcaaaatatcacgaaactctcaggcagcactttttctcaggcatagctcagggtagcaatcaaaatcagtaacgaagtaattttcatgtaggcccatgataagtgataagtttttagatcaaaggctcaccagcccggcttttatagaaagccaaaatggcaacatgtcatcccgataagtgccaagtgcttatacgggtgcttagaaaatgatcaaagttaacttatccttacctggctaagcaaggtgggagaaagatccaaacgtacacatctccctattgctccatatgaaattggagtattttttaaatcttgcctatctttttttccctatctaatatctattgtttgcttacgatgcagatttgaggtcaccaatggatgattcaacggatgacgattcgtatcatccaagaaaacactatgcttatgatcgtcaggtttcttcaagcagatggcgtaccagccgcgagtatatcagaggtcccggccccgaaactcatactactgagagtgctcaagatggacaggatccacctgctggagtatattcctatggttatttttctggcagtggtaatgatcctcaagttcaaggacactttgttccggagattcaaaagtacaacccttacgtgattttcaaaggtgaacaactcccggttcctatatgggaactgccagaggagaaggtccaagattttcatgataggtactttattgcaaaagacaagagtcgagttgaagccaggaagactctgaataggttgttagaggggaacatcaatacaattgaaaggggacatggatataaattcaatattccaaaatatacagataacatggagtttaatgaggaagtcaaggtttctctagcaaaagcaggcaagaccataagccgttccttttgcaatgcgaatcagcgggaagttgcatctaggactggctataccattgatctaatagaacggacacttggggctggattgaacatctcgaagagaactgtcttatacacaaacaaggatctgtttggggatcaaagtaaatcagatcaagcgatcaatgacatctgcgctttgacaaatatcagaaggggctctttgggtataatagcagctgaaaaaggaattgtagttggaaacattttcctggaattgacaaatggcaaatcgattagttgttctattggagtgcagataccacacaggcttgaccagatcaaagatgtttgtgttgaaataggttcacgcaacatagagtatattcttgttgtggaaaagcatacaatgttgaattatctactagagatggactatcacaccaataacaactgtataattctgacaggatgtggcatgccaaccctccaaacaagggatttcctcagattcttgaaacaacgcactggactacctgtctttggactttgtgatccagatcctgaaggtataagtattcttgctacgtatgctagagggtcttgcaattcagcatatgacaatttcaatatttccgtgccatctatttgttgggttggattgtcatcctcagacatgataaagttgaatttgtctgagaccaactactcacgtttgtctcgcgaggacaaaactatgttgaagaacctttggcaggacgatttgtccgatgtatggaaacgcagaatcgaagaaatgataagttttgacaagaaggcctcttttgaagctattcatagtttggggtttgattattttgcaaccaatttgcttccggatatgattaacaaagtacgagaaggctatgttcaggtatatttctcactcctatagcaacttgtattttttttatattactttgaaattcgtgatccatgagcacactttttcttatatatcagtgtatacattctttgctaggttcaagagaaaaaagagcctcaagacactgaagccagtgaggactgatttggaggactctaatgcagctagagattcagatccataagtttctacaagtaaaagttggagcagcagattggaactgcatgttgatttttgtggatgctcaagcttcactcgtatgtttggcttctgataagtctgtaatagcttagcagcacaattattatagttgtcttctaggtgatcgatctcctaaatacttgcaccactattattgtagttgtcttttatgtgatcgatctcctaagtacctttctgtctgtaatagtttagcaacaccattattatagtactagttatcgtctaggtgatcgatctctcctaagtgcttgcactattgttactgaagttgtcttctagcactattggtactgcagttgttttttcgctgatcg</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073839.1 RefSeq:Os12g0622500]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 12]]
[[Category:Chromosome 12]]

@@ Line 11: / Line 11: @@
 ==Labs working on this gene==
 *Chinese Ministry of Science and Technology
 *Natural Science Fundation of China
-<br>
 ==References==
 <references>

@@ Line 4: / Line 4: @@
 ===Gene Symbol===
 *'''Os12g0622500 <=> 	OsSpo11-4'''
 ===Function===
 *'''Spo11''' is essential for initiating meiotic recombination and this function appears conserved among other eukaryotes.
 ===Mutant===
 *'''OsSpo11-4''' exhibited double-strand DNA cleavage activity and its enzymatic activity appears dependent on Mg2+ and independent of OsTopVIB, despite its interaction with OsTopVIB. We further analyzed the biological function of OsSpo11-4 by RNA interference and found that down-regulated expression of OsSpo11-4 led to defects in male meiosis, indicating '''OsSpo11-4''' is required for meiosis.
 ==Labs working on this gene==

@@ Line 8: / Line 8: @@
 *'''Spo11''' is essential for initiating meiotic recombination and this function appears conserved among other eukaryotes.
 <br>
-===Expression===
+===Mutant===
 *'''OsSpo11-4''' exhibited double-strand DNA cleavage activity and its enzymatic activity appears dependent on Mg2+ and independent of OsTopVIB, despite its interaction with OsTopVIB. We further analyzed the biological function of OsSpo11-4 by RNA interference and found that down-regulated expression of OsSpo11-4 led to defects in male meiosis, indicating '''OsSpo11-4''' is required for meiosis.
 <br>

@@ Line 6: / Line 6: @@
 <br>
 ===Function===
-Please input function information here.
+*'''Spo11''' is essential for initiating meiotic recombination and this function appears conserved among other eukaryotes.
+<br>
 ===Expression===
-Please input expression information here.
+*'''OsSpo11-4''' exhibited double-strand DNA cleavage activity and its enzymatic activity appears dependent on Mg2+ and independent of OsTopVIB, despite its interaction with OsTopVIB. We further analyzed the biological function of OsSpo11-4 by RNA interference and found that down-regulated expression of OsSpo11-4 led to defects in male meiosis, indicating '''OsSpo11-4''' is required for meiosis.
+<br>
 ==Labs working on this gene==

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice '''Os12g0622500''' was reported as '''	OsSpo11-4''' in 2011 <ref name="ref1" /> by researchers from the China.
+<br>
 ==Annotated Information==
 ===Function===
 Please input function information here.
@@ Line 14: / Line 17: @@
 ==Labs working on this gene==
-Please input related labs here.
+*Chinese Ministry of Science and Technology
-==References==
+</references>
-Please input cited references here.
+<br>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 1: / Line 1: @@
-{{JaponicaGene|
+Please input one-sentence summary here.
-  ORGANISM  Oryza sativa Japonica Group
+==Annotated Information==
-            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+===Function===
-            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+Please input function information here.
-            clade; Ehrhartoideae; Oryzeae; Oryza.
+===Expression===
-Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
+Please input expression information here.
-AP = Chromosome 12:26804459..26807429|
-CDS = 26805466..26806881,26806990..26807037|
+===Evolution===
-GCID = <gbrowseImage1>
+Please input evolution information here.
-name=NC_008405:26804459..26807429
-source=RiceChromosome12
+You can also add sub-section(s) at will.
-preset=GeneLocation
-</gbrowseImage1>|
+==Labs working on this gene==
-GSID = <gbrowseImage2>
+Please input related labs here.
-name=NC_008405:26804459..26807429
-source=RiceChromosome12
+==References==
-preset=GeneLocation
+Please input cited references here.
-</gbrowseImage2>|
-CDNA = <cdnaseq>atggatgattcaacggatgacgattcgtatcatccaagaaaacactatgcttatgatcgtcaggtttcttcaagcagatggcgtaccagccgcgagtatatcagaggtcccggccccgaaactcatactactgagagtgctcaagatggacaggatccacctgctggagtatattcctatggttatttttctggcagtggtaatgatcctcaagttcaaggacactttgttccggagattcaaaagtacaacccttacgtgattttcaaaggtgaacaactcccggttcctatatgggaactgccagaggagaaggtccaagattttcatgataggtactttattgcaaaagacaagagtcgagttgaagccaggaagactctgaataggttgttagaggggaacatcaatacaattgaaaggggacatggatataaattcaatattccaaaatatacagataacatggagtttaatgaggaagtcaaggtttctctagcaaaagcaggcaagaccataagccgttccttttgcaatgcgaatcagcgggaagttgcatctaggactggctataccattgatctaatagaacggacacttggggctggattgaacatctcgaagagaactgtcttatacacaaacaaggatctgtttggggatcaaagtaaatcagatcaagcgatcaatgacatctgcgctttgacaaatatcagaaggggctctttgggtataatagcagctgaaaaaggaattgtagttggaaacattttcctggaattgacaaatggcaaatcgattagttgttctattggagtgcagataccacacaggcttgaccagatcaaagatgtttgtgttgaaataggttcacgcaacatagagtatattcttgttgtggaaaagcatacaatgttgaattatctactagagatggactatcacaccaataacaactgtataattctgacaggatgtggcatgccaaccctccaaacaagggatttcctcagattcttgaaacaacgcactggactacctgtctttggactttgtgatccagatcctgaaggtataagtattcttgctacgtatgctagagggtcttgcaattcagcatatgacaatttcaatatttccgtgccatctatttgttgggttggattgtcatcctcagacatgataaagttgaatttgtctgagaccaactactcacgtttgtctcgcgaggacaaaactatgttgaagaacctttggcaggacgatttgtccgatgtatggaaacgcagaatcgaagaaatgataagttttgacaagaaggcctcttttgaagctattcatagtttggggtttgattattttgcaaccaatttgcttccggatatgattaacaaagtacgagaaggctatgttcaggttcaagagaaaaaagagcctcaagacactgaagccagtgaggactga</cdnaseq>|
+==Structured Information==
-AA = <aaseq>MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTT                     ESAQDGQDPPAGVYSYGYFSGSGNDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELP                     EEKVQDFHDRYFIAKDKSRVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNE                     EVKVSLAKAGKTISRSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDL                     FGDQSKSDQAINDICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIP                     HRLDQIKDVCVEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTR                     DFLRFLKQRTGLPVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSS                     DMIKLNLSETNYSRLSREDKTMLKNLWQDDLSDVWKRRIEEMISFDKKASFEAIHSLG                     FDYFATNLLPDMINKVREGYVQVQEKKEPQDTEASED</aaseq>|
+     [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]