Os12g0631100 - Revision history

Liman at 09:24, 20 December 2016

2016-12-20T09:24:50Z

Liman at 09:19, 20 December 2016

2016-12-20T09:19:41Z

Liman at 09:19, 20 December 2016

2016-12-20T09:19:08Z

Liman at 14:01, 15 October 2016

2016-10-15T14:01:45Z

192.168.72.52 at 03:50, 15 May 2015

2015-05-15T03:50:18Z

127.0.0.1: Created page with "{{JaponicaGene| GeneName = Os12g0631100| Description = Ras small GTPase, Ras type family protein| Version = NM_001073872.1 GI:115489705 GeneID:4352862| Length = 3156 bp| ..."

2012-06-21T10:38:17Z

Created page with "{{JaponicaGene| GeneName = Os12g0631100| Description = Ras small GTPase, Ras type family protein| Version = NM_001073872.1 GI:115489705 GeneID:4352862| Length = 3156 bp| ..."

New page

{{JaponicaGene|
GeneName = Os12g0631100|
Description = Ras small GTPase, Ras type family protein|
Version = NM_001073872.1 GI:115489705 GeneID:4352862|
Length = 3156 bp|
Definition = Oryza sativa Japonica Group Os12g0631100, complete gene.|
Source = Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
AP = Chromosome 12:27248490..27251645|
CDS = 27248644..27248685,27248949..27249026,27249122..27249289,27250149..27250197,27250399..27250472<br>,27251007..27251100,27251239..27251345|
GCID = <gbrowseImage1>
name=NC_008405:27248490..27251645
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=NC_008405:27248490..27251645
source=RiceChromosome12
preset=GeneLocation
</gbrowseImage2>|
CDNA = <cdnaseq>atggcggccaaccccggcaacaagatccgcaacgccaagctggttcttcttggagatgtgggcacgggcaagtcgagcctcgttctccggtttgtgaagggccagtttgttgagttccaggagtccaccatcggcgcggccttcttctcgcaaaccttggcggttaacgatgagacggtgaagttcgaaatctgggatactgcagggcaggagaggtatcatagcttggctccgatgtactatcggggtgcggctgccgcgatagttgtctacgacatcacaaatgcggcctctttcacacgtgcaaaaaaatgggttcaagaacttcaagcgcaaggaaacccaaacacgataatggctcttgctggtaacaaggctgatatggtagaggcgaggcaggtgccagcagaagaggcaaagacctacgcacaagagaatggccttttcttcatggaaacatctgcgaaaacggcgatcaatgtgaacgatgtattccacgagatcgcaaagagattgcttcaaggacagcaggctcaagacacaccggctggaatggttctcaaccagagaccagctgagaggatggtgagcagttcttcatgctgctcataa</cdnaseq>|
AA = <aaseq>MAANPGNKIRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTI GAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRA KKWVQELQAQGNPNTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAIN VNDVFHEIAKRLLQGQQAQDTPAGMVLNQRPAERMVSSSSCCS</aaseq>|
DNA = <dnaseqindica>155..196#460..537#633..800#1660..1708#1910..1983#2518..2611#2750..2856#aaaaagaattttcaggttttcttctcgctttcaccggagaaggagaaggagaggaaggtgttgatcgaatcctcctccaatcgcgcgcgattcgatccccgttgctggccgctcgctcgctcgatccctcatccgatctgaatcccccgatctgatggcggccaaccccggcaacaagatccgcaacgccaagctggtgaggaatcaaacgtctccctcaatttggtttcttgatttgtttttgtttccccctggatttagggctgatgatatttccccctaagatccctccttgttggtcgcgattagattgatgaactgattcccccttattatgatcgtaaaacaagaactcaatctttacttattggcatcatgtgctcatgttgttcatgtatcacgaattccgggtcttgggagtatgttggtatgcgtttactaacagtgttgattaaccaggttcttcttggagatgtgggcacgggcaagtcgagcctcgttctccggtttgtgaagggccagtttgttgagttccaggtgaatttcttttacacgtgaactactatgacctaagattgagcaggtttggtgtgttgggataggcttgattttgttggttcattcggatgcaggagtccaccatcggcgcggccttcttctcgcaaaccttggcggttaacgatgagacggtgaagttcgaaatctgggatactgcagggcaggagaggtatcatagcttggctccgatgtactatcggggtgcggctgccgcgatagttgtctacgacatcacaaatgcggttagtacaagactaagtgacttgcttgaattttaattaagttgtacatcttgatgatagtttctcaaagttttgatttaatgcaatcatgcctgcatatcactgaaaattataagtacggcaccacagccgcgattggtagaaattactaacagtctaataatataatttacgccattgaaaccagaattacgattagtaagtattggtaaaatcaccccttctctgtgattaacatatcgaaccaagtattcatgataatcgtacaccaactttgacattttaatccatcatcttttattgtcacagaagattcgaacttcctacatatagttttaggttatattgctcttctggtcttggttcaagtgtggccatgttttcccagatgatagactgatgagttggttctgccattaccaattagcaactcccatgtcctggcgttatggcacactgatagtagatcaactagttatcttcactgtttttgcaccttgtttgcatcttatgagcaagccctattcggagaagatactgtatctattgtgtgcccttacttgaacggaggaacccttcaattcacggtcttgcgatcttatgtattagcatattagcaacgcatctctttatatttttcttgcttcacatgcagcttttagtgtgtgttcttggtaaacatgatttcgatctgcattacaagtttttgggaagaaataaatatatcatagttgatagtttacaccgtgcacaaatttaagtctaacttcattcatactgttttatctgagtatgctcactgctcattttgtaaaagtggtgctaatagtggttctcatcattattttctgccttttaggcctctttcacacgtgcaaaaaaatgggttcaagaacttcaagcgcaaggtaatccatttctctttttgtaattttcacgtatgattagaacatctgtaaataagcagctatattgattttgtacaactgctggaccacctgtactgtacagttctcttataagtgaacttgcaatttcatagcactataagacatcgtgtctgtttttttaatagtccagctaatacaagttaacttctttttatacaggaaacccaaacacgataatggctcttgctggtaacaaggctgatatggtagaggcgaggcaggtgccagcagaagtatgtaattttgcttctcaaatccctttttttgtgattatatgtcaaagcactagtgcatttctgcatgaaactatcatgtcactgtgatttgatatttgtcactagcatctcataatggtgcttattttcctcattgcttcgagcaaaagtataatttggccttaccagcttcaaattactgtatttttctcctgtcacatttgacgatgaattatcagtatgttgtgatagtgaatagcacagaataactatgtctactttttgttgctcctgcttcattgaaaaaataactctgaattgaagtatttaacaaaaaaatatataataaaaagttgtgaaggcaagaaggttttctgttctgtggtggtcttttttgtttgctcattgcaacactgatctattaaataatagataccatcttttgtgtttgtggcactatcctgttcttgaaatgaatttcttttccattatgacagcctctgcggcttgctttgttgatgcttatcaaaagctctaatttgtatggtgcaggaggcaaagacctacgcacaagagaatggccttttcttcatggaaacatctgcgaaaacggcgatcaatgtgaacgatgtattccacgagatcggtgagtttagatcacaaatcatttccgcagtggatttctgtacgccgacagagctggttggttatttggtgtacaaaaatgtacacagcctgcttctgctaatttctaagcgaatttgcattcttaatctgatttcagcaaagagattgcttcaaggacagcaggctcaagacacaccggctggaatggttctcaaccagagaccagctgagaggatggtgagcagttcttcatgctgctcataattcaagtgtggagtatgtgacaactacataatgccatggcctgaaatccaggagaagtgtgtatgcatcagagatgcacacaaagcttgtaaagtggctgctgccatcccagctgctgtttcttattttgtcatgttcgttctgtaaatgtgaatactagggtgtcgctgcagaaattcagatgtattactacagtgtatgctcttgcttaagtatttctcgacactgaaacagagtaaagcaaagtctagtcagattcgttttgtttgcttcaattcagatcatgcagtgagcttgctt</dnaseqindica>|
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073872.1 RefSeq:Os12g0631100]|
}}
[[Category:Genes]]
[[Category:Japonica mRNA]]
[[Category:Oryza Sativa Japonica Group]]
[[Category:Japonica Genes]]
[[Category:Japonica Chromosome 12]]
[[Category:Chromosome 12]]

@@ Line 1: / Line 1: @@
-The rice gene Os12g0631100 was reported as '''''gpa1''''' in 2010<ref name="ref1" /> by researchers from China.
+The rice gene Os12g0631100 was reported as '''''OsRab5B2''''' in 2010<ref name="ref1" /> by researchers from China.
 ==Annotated Information==
 ===Gene Symbol===
-*'''''Os12g0631100 <=> gpa1,OSGPA1
+*'''''Os12g0631100 <=> glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a
 ===Function===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* The gene corresponding to the gpa1 mutation was found to be '''''OsRab5a''''', which encodes a small GTPase.
+* '''''OsRab5a''''' plays an essential role in trafficking of storage protein to PBII, possibly as part of its function in organizing the endomembrane system in developing endosperm cells of rice.
 ===Mutation===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''gpa1''''' mutant accumulates 57 kDa pro-glutelins in seeds and whose endosperm has a floury appearance.
+* Transmission electron microscopy analysis showed that the gpa1 endosperm cells have an enlarged ER lumen and a smaller protein body II (PBII), and accumulated three types of newly generated subcellular structures. Moreover, a proportion of glutelins in the gpa1 endosperm cells were not delivered to PBII, and instead were mis-targeted to two of the newly generated structures or secreted.
 ===Expression ===
-[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
+* '''''OsRab5a''''' is widely expressed in rice plants. Quantitative RT-PCR analysis showed that the highest expression of '''''OsRab5a''''' occurs in roots.
 ===Evolution===

← Older revision		Revision as of 09:19, 20 December 2016
Line 1:		Line 1:
−	The rice gene Os12g0631100 was reported as '''''gpa1''''' in 20<ref name="ref1" /> by researchers from China ~~and Japan~~.	+	The rice gene Os12g0631100 was reported as '''''gpa1''''' in 2010<ref name="ref1" /> by researchers from China.

	==Annotated Information==		==Annotated Information==

@@ Line 1: / Line 1: @@
-The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
+The rice gene Os12g0631100 was reported as '''''gpa1''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Gene Symbol===
-*''''' <=>
+*'''''Os12g0631100 <=> gpa1,OSGPA1
 ===Function===
@@ Line 19: / Line 19: @@
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
+*State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, China,
 ==References==
 <references>
 * <ref name="ref1">
 </ref>

@@ Line 1: / Line 1: @@
-Please input one-sentence summary here.
+The rice gene  was reported as '''''''''' in 20<ref name="ref1" /> by researchers from China and Japan.
 ==Annotated Information==
 ===Function===
-Please input function information here.
+[[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']]
 ===Evolution===
 You can also add sub-section(s) at will.
 ==Labs working on this gene==
 ==References==
-Please input cited references here.
+<references>
 ==Structured Information==
       [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

@@ Line 1: / Line 1: @@
-{{JaponicaGene|
+Please input one-sentence summary here.
-  ORGANISM  Oryza sativa Japonica Group
+==Annotated Information==
-            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+===Function===
-            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+Please input function information here.
-            clade; Ehrhartoideae; Oryzeae; Oryza.
+===Expression===
-Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
+Please input expression information here.
-AP = Chromosome 12:27248490..27251645|
-CDS = 27248644..27248685,27248949..27249026,27249122..27249289,27250149..27250197,27250399..27250472<br>,27251007..27251100,27251239..27251345|
+===Evolution===
-GCID = <gbrowseImage1>
+Please input evolution information here.
-name=NC_008405:27248490..27251645
-source=RiceChromosome12
+You can also add sub-section(s) at will.
-preset=GeneLocation
-</gbrowseImage1>|
+==Labs working on this gene==
-GSID = <gbrowseImage2>
+Please input related labs here.
-name=NC_008405:27248490..27251645
-source=RiceChromosome12
+==References==
-preset=GeneLocation
+Please input cited references here.
-</gbrowseImage2>|
-CDNA = <cdnaseq>atggcggccaaccccggcaacaagatccgcaacgccaagctggttcttcttggagatgtgggcacgggcaagtcgagcctcgttctccggtttgtgaagggccagtttgttgagttccaggagtccaccatcggcgcggccttcttctcgcaaaccttggcggttaacgatgagacggtgaagttcgaaatctgggatactgcagggcaggagaggtatcatagcttggctccgatgtactatcggggtgcggctgccgcgatagttgtctacgacatcacaaatgcggcctctttcacacgtgcaaaaaaatgggttcaagaacttcaagcgcaaggaaacccaaacacgataatggctcttgctggtaacaaggctgatatggtagaggcgaggcaggtgccagcagaagaggcaaagacctacgcacaagagaatggccttttcttcatggaaacatctgcgaaaacggcgatcaatgtgaacgatgtattccacgagatcgcaaagagattgcttcaaggacagcaggctcaagacacaccggctggaatggttctcaaccagagaccagctgagaggatggtgagcagttcttcatgctgctcataa</cdnaseq>|
+==Structured Information==
-AA = <aaseq>MAANPGNKIRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTI                     GAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRA                     KKWVQELQAQGNPNTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAIN                     VNDVFHEIAKRLLQGQQAQDTPAGMVLNQRPAERMVSSSSCCS</aaseq>|
+     [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]