Xysj2012: /* Indica Group */

2013-07-21T10:43:40Z

‎Indica Group

Xysj2012: Created page with "==Brief Introduction== * SBP-box gene family belongs to plant-specific zinc finger transcription factor which was first identified in [http://en.wikipedia.org/wiki/Antirrhinum..."

2013-07-21T10:43:19Z

Created page with "==Brief Introduction== * SBP-box gene family belongs to plant-specific zinc finger transcription factor which was first identified in [http://en.wikipedia.org/wiki/Antirrhinum..."

New page

==Brief Introduction==
* SBP-box gene family belongs to plant-specific zinc finger transcription factor which was first identified in [http://en.wikipedia.org/wiki/Antirrhinum_majus ''Antirrhinum majus''] for their interaction with the promoter sequence of the floral meristem identity gene ''SQUAMOSA'' <ref name="ref1" /><ref name="ref2" /><ref name="ref3" /><ref name="ref4" /><ref name="ref5" /><ref name="ref6" />. SBP-box genes encode proteins sharing a conserved DNA-binding domain of 70 ~ 80 amino acid residues, with a novel zinc finger motif that contains two zinc-binding sites. It also has a nuclear localization signal (NLS) at its C-terminus<ref name="ref3" /><ref name="ref4" /><ref name="ref5" /><ref name="ref6" />.
 [[File:BGIOSGA020577.png|center|thumb|1000px|'''Figure 1.''' ''Gene structure of BGIOSGA020577'']]
* As no SBP-box gene has been found in animals to this day, it was suggested that ''SPL'' genes might appear after the divergenece of plants and animals<ref name="ref6" />.
* As an ubiquitous TF in higher plants, SBP-box genes play important roles in plant growth and flower development. It has been reported that ''AtSPL8'' in ''Arabidopsis'' can affect pollen sac development<ref name="ref3" /><ref name="ref7" /> and ''SPL14'' can conferring resistance to the programmed cell death (PCD)-inducing fungal toxin fumonisin B1 (FB1)<ref name="ref4" /><ref name="ref8" />.
*'''Pfam: [http://pfam.janelia.org/family/PF03110 PF03110]''' '''||''' '''InterPro: [http://www.ebi.ac.uk/interpro/entry/IPR004333 IPR004333]''' '''||'''

==''Japonica'' Group==
{| style="background:#A1A3A6; width:85%;" border="0"
|-style="background:white; color:black" align="center"
!
'''[[Os08g0509600]]'''
||
'''[[Os07g0505200]]'''
||
'''[[Os06g0659100]]'''
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'''[[Os06g0703500]]'''
||
'''[[Os03g0833300]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os08g0531600]]'''
||
'''[[Os09g0507100]]'''
||
'''[[Os04g0551500]]'''
||
'''[[Os04g0656500]]'''
||
'''[[Os02g0177300]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os02g0174100]]'''
||
'''[[Os01g0292900]]'''
||
'''[[Os01g0922600]]'''
||
'''[[Os05g0408200]]'''
||
'''[[Os09g0491532]]'''
|-style="background:white; color:black" align="center"
!
'''[[Os02g0139450]]'''
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'''[[Os06g0663500]]'''
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||

||

|}

==''Indica'' Group==
{| style="background:#A1A3A6; width:85%;" border="0"
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA019856]]'''
||
'''[[BGIOSGA024253]]'''
||
'''[[BGIOSGA023408]]'''
||
'''[[BGIOSGA020577]]'''
||
'''[[BGIOSGA017275]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA005075]]'''
||
'''[[BGIOSGA007655]]'''
||
'''[[BGIOSGA028994]]'''
||
'''[[BGIOSGA007499]]'''
||
'''[[BGIOSGA016888]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA007643]]'''
||
'''[[BGIOSGA003313]]'''
||
'''[[BGIOSGA020731]]'''
||
'''[[BGIOSGA029541]]'''
||
'''[[BGIOSGA009504]]'''
|-style="background:white; color:black" align="center"
!
'''[[BGIOSGA029051]]'''
||
'''[[BGIOSGA026705]]'''
||
'''[[BGIOSGA031055]]'''
||
'''[[BGIOSGA023409]]'''
||
'''[[BGIOSGA033954]]'''
|}

← Older revision		Revision as of 10:43, 21 July 2013
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	'''[[BGIOSGA033954]]'''		'''[[BGIOSGA033954]]'''
	\|}		\|}
		+	==References==
		+	<references>
		+	* <ref name="ref1">
		+	Klein J, Saedler H, Huijser P. A new family of DNA binding proteins includes putative transcriptional regulators of theAntirrhinum majus floral meristem identity geneSQUAMOSA[J]. Molecular and General Genetics MGG, 1996, 250(1): 7-16.
		+	</ref>
		+	* <ref name="ref2">
		+	Cardon G, Höhmann S, Klein J, et al. Molecular characterisation of the ''Arabidopsis'' SBP-box genes[J]. Gene, 1999, 237(1): 91-104.
		+	</ref>
		+	* <ref name="ref3">
		+	Yang Z, Wang X, Gu S, et al. Comparative study of SBP-box gene family in ''Arabidopsis'' and rice[J]. Gene, 2008, 407(1): 1-11.
		+	</ref>
		+	* <ref name="ref4">
		+	Riese M, Höhmann S, Saedler H, et al. Comparative analysis of the SBP-box gene families in ''P. patens'' and seed plants[J]. Gene, 2007, 401(1): 28-37.
		+	</ref>
		+	* <ref name="ref5">
		+	Guo A Y, Zhu Q H, Gu X, et al. Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family[J]. Gene, 2008, 418(1): 1-8.
		+	</ref>
		+	* <ref name="ref6">
		+	Xie K, Wu C, Xiong L. Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice[J]. Plant physiology, 2006, 142(1): 280-293.
		+	</ref>
		+	* <ref name="ref7">
		+	Unte U S, Sorensen A M, Pesaresi P, et al. SPL8, an SBP-box gene that affects pollen sac development in Arabidopsis[J]. The Plant Cell Online, 2003, 15(4): 1009-1019.
		+	</ref>
		+	* <ref name="ref8">
		+	Stone J M, Liang X, Nekl E R, et al. Arabidopsis AtSPL14, a plant‐specific SBP‐domain transcription factor, participates in plant development and sensitivity to fumonisin B1[J]. The Plant Journal, 2005, 41(5): 744-754.
		+	</ref>
		+	</references>

SBP - Revision history

Xysj2012: /* Indica Group */

Xysj2012: Created page with "==Brief Introduction== * SBP-box gene family belongs to plant-specific zinc finger transcription factor which was first identified in [http://en.wikipedia.org/wiki/Antirrhinum..."