Difference between revisions of "Os01g0128400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os01g0128400| Description = Conserved hypothetical protein| Version = NM_001048447.1 GI:115434307 GeneID:4325966| Length = 5073 bp| Definition ...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os01g0128400|
 
GeneName = Os01g0128400|

Revision as of 18:43, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0128400

Description

Conserved hypothetical protein

Version

NM_001048447.1 GI:115434307 GeneID:4325966

Length

5073 bp

Definition

Oryza sativa Japonica Group Os01g0128400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:1570524..1575596

Sequence Coding Region

1570942..1571178,1571525..1571656,1571737..1571816,1571919..1572048,1572136..1572268
,1572376..1572497,1572612..1572749,1573493..1573678,1574576..1574713
,1575068..1575532

Expression

GEO Profiles:Os01g0128400

Genome Context

<gbrowseImage1> name=NC_008394:1570524..1575596 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:1570524..1575596 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccatggacgacctcgccggctcatcctcctcctcctccgcgatggacgccgtggtcgccgacccctcgcacgggtggcagaaggtcacctaccccaagcgccaccgcaagcagggggcggcggcgctgccctccgcggctgctcccgatctggggttcctgcccaacggcggcggcaaggtcaacgtgttcgaggccgtcgacaggaacgccgagaagcgccaccgcgcgctcctggccgccagggacgcggccgaccccgacgccgcgcggatcgccgccgccacggcctccgcgtactctgacgacgacgacgactccgacgaggcgcaggcgactcgccccgagggggaggtgaagaagcccaaggtgaagaagccgaagaagcccaaggtgacggtcgccgaggcggccgctctgatcgacgccgagaacctcgcggcgcatctcgtgcagatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtccaagatggttgatattcccttgtgccatattcctgaaccagttcgcaacacagcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgcatagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaaggccgcacagcaaactccaagggcccaggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaacaaacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatcattgtttgggttattgctcaggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttcccacactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcgaaagaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggggaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttccagcgctcgtgtaaaggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtcctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaagcaatgcaagaaaataacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgcagagtcctacaagctgtgggaaagacttcatcctgaaaatgttgaagccagtgttgtagtccttagcactatagtcacaaaatggagcgagctgtctcataagctcagtgctgaatctcttaaggtgactctgaagaacttaaggactaagaatgaggcggccctagaagcagcaacggactctggaaagcaggcatctatcaaggccgcggacaagtattccaaggagatccttggaaggttgagccgcggcggagcctgcctgaagggcagcctgctggttatcacgcttgctgttgccgcaggctttgtgctatctcctaacctggagatcccatccgactgggacaagctccaggccatggtggcgtctcacctgtcgttctag</cdnaseq>

Protein Sequence

<aaseq>MAMDDLAGSSSSSSAMDAVVADPSHGWQKVTYPKRHRKQGAAAL PSAAAPDLGFLPNGGGKVNVFEAVDRNAEKRHRALLAARDAADPDAARIAAATASAYS DDDDDSDEAQATRPEGEVKKPKVKKPKKPKVTVAEAAALIDAENLAAHLVQISESYEN QQDIQLMRFADYFGRSFASVSAAQFPWAKMFKESLVSKMVDIPLCHIPEPVRNTASDW INQRSPDALGDFVMWCIDSIMSELSGQAVGAKGSKKAAQQTPRAQVAIFVVLALTVRR KPEVLTNVLPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVTGMFCWAHFLFPTLCAKP SGNPQTRDLVLQLLERILSAPKARGILLNGAVRKGERLIPPVTFDLFMRAAFPVSSAR VKATERFEAAYPTIKELALAGPPGSKTVKQAAQQLLPLCVKAMQENNADLTGESAGVF IWCLTQNAESYKLWERLHPENVEASVVVLSTIVTKWSELSHKLSAESLKVTLKNLRTK NEAALEAATDSGKQASIKAADKYSKEILGRLSRGGACLKGSLLVITLAVAAGFVLSPN LEIPSDWDKLQAMVASHLSF</aaseq>

Gene Sequence

<dnaseqindica>4419..4655#3941..4072#3781..3860#3549..3678#3329..3461#3100..3221#2848..2985#1919..2104#884..1021#65..529#cgcaactcgctcatctcatcgctctcgcctcgactcgcctccacgaagcccacctcgactcgccatggccatggacgacctcgccggctcatcctcctcctcctccgcgatggacgccgtggtcgccgacccctcgcacgggtggcagaaggtcacctaccccaagcgccaccgcaagcagggggcggcggcgctgccctccgcggctgctcccgatctggggttcctgcccaacggcggcggcaaggtcaacgtgttcgaggccgtcgacaggaacgccgagaagcgccaccgcgcgctcctggccgccagggacgcggccgaccccgacgccgcgcggatcgccgccgccacggcctccgcgtactctgacgacgacgacgactccgacgaggcgcaggcgactcgccccgagggggaggtgaagaagcccaaggtgaagaagccgaagaagcccaaggtgacggtcgccgaggcggccgctctgatcgacgccgagaacctcgcggcgcatctcgtgcagatctcggtaatacccgtcctgtttcgctgaattcctcttcggaaatcgtcagatctcgacttgtttggactggatcatatttttgtctttttgttaaggatcggatctgatgagggtttagtgctggatcgttcgggttttttcaaaattccgacaaaatgttgggtgtctactagttttcgattaagatggaggaaaattctggtcgtaccagaaagttgggatctccttgatgtaaaaacacgggatcttgggatcttggaaagcatgggggttttggtgcaactattagatcttttaacgtgtcatagctcttttctgttttgttccgtagattctaaccctctgttctgtgtgcaggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtccaagatggttgatgtgagttactagagttgccctaactcttttacgcatagagatattgcatttggaccagatataaaaaggcaattgcagtttatagggtgattcacttgcatcacatatgaaatgttactgcggtttatctgattgttaagttcttatgatctttttcttgtatctacttacaaattttacgaaaattaatggttgtgcatgaacattgatactgattcatgcatcgtcatcattgagttgtgaaatgctaatgctgcttttggtaactgccagtaatattattcgaattatttgcagacttgacgtcgctgtaaacgtgcttgtcaagtatgctagttttaaggatggttatgctatttctgctcaccctgtggatgcattatcaattaaaacaaattatttccgaacacgattattcatgtataacaggatacagctggataagttcaatgcaattactgcaacaacttgagtttacatttaacggtttacctgaaatccgcattgtccaaaaatctttctgtatttgtgacatggtattgtgttcagttccttccattttccgctctgaaagggggaggcgtggaggcaagttaatttggaaggtggggggttggtgcggattgtagtatgaggagtaaatgggtgtatcagggtacacattaattggattagcatggaatttcttagcctctaataaatcggaagcgattgcttgataaatatgcaatatgtttcattccagaaaagaaacgacacatactcgtgcaattaataattcagtgtattaatggattctagtacttctgttttgattttataagcatgaaaatgtccctttatttccgtgtctctctatttttagatttgcatctaactagttaatatattgtgcagattcccttgtgccatattcctgaaccagttcgcaacacagcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgcatagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaaggccgcacagcaaactccaagggcccaggtagtccttgttcgatcacgacttaactctcactatacaagcctctgcatggtatcatggacttgtgatgtaaagcagcataaaaatgctctacaagatggaaatagcatgcgttttatatttgcgatatgtcctatattgtattcacatcaactgagcctagcgctaatgctgtcatctaatgaagcaacaaccttgcaatgagaaaaaaaaatgtaggctttgcaattgaaatattatatgaacaatttgctcacatcctgcattgctggaagcttgtgcttgtcaataccatttactttagatagatgtgaatgtttctgattgtgtaattcaattagtttagccttttctcattgcttttaacacttcctcacaagaagtaagataataagcagattcgattcgattcgatcatttgtattagtttattactccgatctatggatcaccacgattgctaaaaagtttatataaattctaagaagaactgcattttgatgacagaatattcaagtcctactttatgtaaggtgttcatgaaggagattaaacttttttttttctgttttagggccctgaagattgcatggtggtagatatgataaaacctaaaatgctgatctaataatctgactgccataattcacacttgcttatcggacctgtgattgtaattatggatggttctatcttgttttcaagttggtttatagtttttaaatgactattgctctgttcaggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaacaaacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatcattgtttgggttattgctcaggtatattttccctgctgtgctcttacttgttctgaatggtgctaattattttcagtgctccatactatcattttatattttcttaaaaaatatctcttgcgtgatgtatcataggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttcccacactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcgaaaggtatggctcaacttaaacctgattaagaatctagagccgtttttctgttttctgatatatatcagaagtatttatatgcataatcttttttgatatttcacgtgcagaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggggaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttccagcgctcgtgtaaaggtttgttcttaattcttccttcctgtttgctgaaattttgatatgcgatgatgttctgacttctggtcatcatatggaactctttaggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtcctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaagcaatgcaagaaagtgagctgtcatcctttttcaccctaacttctctttctatatagagcttgttacctttgttttgcaactctgagttgttgcattattgcacattatgttcagataacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgcagagtcctacaagctgtgggtgagtaatctttgtctgtctgcctttataacaccaagtgagaatgttgcaactgaagttttcttaattctgatttgcaggaaagacttcatcctgaaaatgttgaagccagtgttgtagtccttagcactatagtcacaaaatggagcgagctgtctcataagctcagtgctgaatctcttaaggtgactctgaagaacttaaggactaaggtatgatatgtccctgttgcattacttgttttgtttgactgtttatgatgtttgtttcattcttatgtatatgcaatgtgatgctatcctttgcatagtagtaaaattctgtatgactagtgaattctgattcatgacaaaaagagagcttcttgatagcacaattagtttgggataaatggcgttacctcctttttttttttgataaaatggaaatcaaggtgccacaactcttaaggacatgcaaaagcaagtaaacttgtttgacaccaccacctttagctgttcacataccccctaggtatttgtactccgtagtaatatgtgcaattggttgcaattgcagaatgaggcggccctagaagcagcaacggactctggaaagcaggcatctatcaaggccgcggacaagtattccaaggagatccttggaaggttgagccgcggcggagcctgcctgaagggcagcctgctggttatcacgcttgctgttgccgcaggctttgtgctatctcctaacctggagatcccatccgactgggacaagctccaggccatggtggcgtctcacctgtcgttctagaagtatatttgtccagcagttgataaaagcttatacagagaatccaaaggagatgaagtgaagattctaggagtgaatgaagaaggctaataagaagggatagatcctagaaaagaatacagttacctttttcgcatcttttcccaagcccgtagttggggggagatgcaagcaactttgcagagatagagagttaaaaagttttaatcgggttagactgatcggtcagaagaaggaaaggttgggccaaatggttcggcctgaggactaacaccacctttgctctatctcgtttttctgcatctgcagcatctcagatgatgagaaacatttttgcttcttttgtttttcctttttcttctgaatcttgtttgcttttaccaacatgccatgtgtgatattattgctgaatcatctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0128400, RefSeq:Os01g0128400