Difference between revisions of "Os01g0658400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os01g0658400| Description = Ubiquitin-conjugating enzyme OsUBC5a| Version = NM_001050298.1 GI:115438966 GeneID:4327162| Length = 3241 bp| Defin...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os01g0658400|
 
GeneName = Os01g0658400|

Revision as of 18:55, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0658400

Description

Ubiquitin-conjugating enzyme OsUBC5a

Version

NM_001050298.1 GI:115438966 GeneID:4327162

Length

3241 bp

Definition

Oryza sativa Japonica Group Os01g0658400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:28536959..28540199

Sequence Coding Region

28537167..28537307,28537417..28537521,28538249..28538376,28539920..28539989

Expression

GEO Profiles:Os01g0658400

Genome Context

<gbrowseImage1> name=NC_008394:28536959..28540199 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:28536959..28540199 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcaaagaggatacagaaggagctcaaggatctgcagaaggatccccctacatcatgcagtgcaggtcctgttggtgaagacatgttccactggcaggcaacgataatgggtccatctgatagcccatatgctggtggagttttcctagttaccatccacttccctcctgattatcccttcaaaccacccaaggtggcgtttcgcaccaaggttttccatccaaacatcaacagcaacgggagcatttgccttgacatccttaaggaccaatggagcccagcactaaccatttccaaggtgttgctgtcaatctgttccctgctgactgatccgaaccctgatgatcctctggtccctgagatcgcccacatgtacaagacagataggcacaagtacgagaacacagcaaggacctggactcagaggtacgccatgtag</cdnaseq>

Protein Sequence

<aaseq>MASKRIQKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSP YAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKV LLSICSLLTDPNPDDPLVPEIAHMYKTDRHKYENTARTWTQRYAM</aaseq>

Gene Sequence

<dnaseqindica>2893..3033#2679..2783#1824..1951#211..280#tcccccaactccattattgattcttgcaaggaggaagagcagctagaggcgaggcaagaaaagaagtgaaatctctccgttagacaggtttgttttcctgcgagtgctctctaatttgcactgattaagctttgatgatgcttgatttgtggtttgattgttcttcttgttgttggagataggaagaggaaaagcaagggggaattggggatggcgtcaaagaggatacagaaggagctcaaggatctgcagaaggatccccctacatcatgcagtgcaggtcttgctttctttcttttgcttgcttcttttgggcgtggattttgcagttctaggccatacatcttgcacaggagtcagatttttgtacatgtgcttctgaatgacttctttgtccacgtgcttgctgctttgccgtagaatagcaatggaaaattgctctccaatttgtcatatacatcaaaggggcttagcttagcagtatctggagtaactctctgtactcagctttgccccagcaaaagaggggaaagacagatcactgtatgattagagttttcatcttatgaagattacggatggaggttttatatatatatcgattaagattaatacggcagagtttgtctgaacgtactcatgcagggattagtttatgctattatgattgacagggatactatatttgccctgatgaattctggtagaattacttccctttccatggcggatataggctggtgttgttgttattgttgtgatttagtctactttacaaactaaatctcaccatccaagtatgctcaagaagtgtcaattaactgagctgaatattgcatatagggtgctgtgcgatttgtattctgaaatgtaaatgttacctgtcaagtgctttgtcaaaggagttgctggtgtggtactataaataccatgagtatcaaatcggactattccttctaatttagctcatcatttactaatatagcataaaacaatggaaatgtagttcagtatagaaaagtgattagcttgccttattcgagagaaaactagttggttgtctagttgttattcttcatctttgtttccaatgatccaggagaacttttataccaaaacaactgcatccatgctgcatctttgtttctagaacccaggatctgtcagacctgtcatcctgtccattggtcagttcatatgcttttatcttttgtagtggttctactagtttttaaaatttatagcagggcccaaaatattcaatagaataaacttaatttgttagactacttgtatgaactttcttcgccttatggacaggtggccttcactcttgcactttaaacttcgttcaactagttggatcgcatgtgccatggcggccacgcttacacattggaaacataagtactatttagtgtggctagaataagtttggtcctttgagcttggagctcaccctgtccatacctgtaagaagtgacaatttcatgttgtctagttgtataccattaagcgaaaatggtaacatactgttattttgtcaaaggaatgtcttccaattttccttggggtcaagaaaaaccaacctgagcttaactgtgcacataacaatggatacttgtcttttgtccttcagcctacttctgttttgtttgaccctgtttcaatacccttatttatcatgcaatttcatctctaatcaaagctgtagagctagaccatatgcccataatatgatatggttatcaggcaatggatagtagcctaggactgcacctagccacatttcttaacagtgatgatttattactatttgacaggtcctgttggtgaagacatgttccactggcaggcaacgataatgggtccatctgatagcccatatgctggtggagttttcctagttaccatccacttccctcctgattatcccttcaaaccacccaaggtacttggcagtgacttatcactccctttttatctgtccactattcctagtcatatatatcttcttactgctgttttgtaaaactgtaaccctattcctctgctcatttcacatataaaaatagaactctggcagatgctataatttgtggttgattgaattggtgctttattcatattttttattctattctaaagcattcaagggattgagaacgtggtataaattataaagttcatgctgaagttgtgcacaagagcaactggtggcatgtcatgccagtaactaacttgttgaaaacatacaggtttagactttagaatgaacttaaaatcaaagccacttatgaacctgattcttgaagatcaaattttgggaaatcaaggtggataaatattgcaagttacggctgtagtcatgcaaaagtgaaagcatagctgctgtctaataatgctaattcagttatgttgccagtgttctcgaatctttgtagtatataacaaagttgtttcctggactgtgctatataaccgaataatggtttggtagtgattgtcttctcacttatcactaaggtgttcttttacttcattctgaaagaatatcacttcaattataaattcttatggtttctggttttcagtctgaatatccattaagttctatagctttacaacagcaccgagactgactgaagaatgtgacgtctatgatatgcaatatgcaggtggcgtttcgcaccaaggttttccatccaaacatcaacagcaacgggagcatttgccttgacatccttaaggaccaatggagcccagcactaaccatttccaaggtttcctttctcgcttaacgctattttccttttgcgaggcggttgcttggtctctcgcagttgggctgaacgaatcccgcaaaaacatgtgctctctgcttgctttcaggtgttgctgtcaatctgttccctgctgactgatccgaaccctgatgatcctctggtccctgagatcgcccacatgtacaagacagataggcacaagtacgagaacacagcaaggacctggactcagaggtacgccatgtagcacctcagatatcgatggacatgtcgatgttgtaacaacattatcaacgggtgtgtctccctctcgccttgtgtggtgtaaggatcaaaaccggctttgcagtgcactcttggtgttgctccattgtgtcactcactcattgcagtgatttcgaatagtatcaaactggtggtttttttcggtcagataatgtttgcaacttgccaac</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0658400, RefSeq:Os01g0658400