Difference between revisions of "Os05g0292200"
(Created page with "{{JaponicaGene|
GeneName = Os05g0292200|
Description = Similar to Transcription factor IIA large subunit (TFIIA-L1)|
Version = NM_001061636.1 GI:115463002 GeneID:4338303|
...") |
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| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{JaponicaGene| | {{JaponicaGene| | ||
GeneName = Os05g0292200| | GeneName = Os05g0292200| | ||
Revision as of 20:07, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os05g0292200 |
|---|---|
| Description |
Similar to Transcription factor IIA large subunit (TFIIA-L1) |
| Version |
NM_001061636.1 GI:115463002 GeneID:4338303 |
| Length |
6398 bp |
| Definition |
Oryza sativa Japonica Group Os05g0292200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:12843807..12850204 |
| Sequence Coding Region |
12843945..12844064,12844175..12844363,12844492..12844659,12844740..12844794,12844918..12844976 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:12843807..12850204 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:12843807..12850204 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaaggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggcgctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgctccaaggcggctcccgcgccgtccgcaggcacccccggcgctggaaccaccccgccggtacacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggacatgctgttccccccgacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaacattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcatggccatgaatggagctgatccaaagactggtcgcccgagtccctacatgcctccaccctctccctggatgactcagaggccgctgggcgttgatgtgaatgtcgcttatgtggagaaccgtgaggacccagataggaccggacagcctccgcaactaactaaggattttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcccttctggttcttttgtgccacaacaagatggaagtgcagatcagatagttgaatttgttgtctcaaaggacaacgcacaacaactttggagttccattgtgaacaagcaaggaacagcaacaaaagaatcttccacaaaggaaacaataattgctccaacgattcctcaacgggatgggatggatgactataatgatccattttacttccaaggagttccaactgaggattacaatacccctggagaatcgtcggaataccgagctcccacaccggctgttggaacaccaaaaccgagaaatgatgtaggcgatgatgatgagcctccgcttaatgaagatgacgatgatgatgatgagttagatgaccttgagcaaggggaggatgagcctaacacacagcaccttgtcctcgcacagtttgacaaagtgacaaggacaaagaaccgctggaaatgcactttgaaggatggaatcatgcatttaaatggccgagatgttctattcaacaaggctaccggcgaatttgatttttga</cdnaseq> |
| Protein Sequence |
<aaseq>MASSNVSTVYISVIDDVISKVRDDFISYGVGDAVLNELQALWEM KMLHCGAISGTIDRSKAAPAPSAGTPGAGTTPPVHDLNVPYEATSEEYATPTADMLFP PTPLQTPIQTPLPGTDAGMYNIPTGPSDYAPSPISDVRNGMAMNGADPKTGRPSPYMP PPSPWMTQRPLGVDVNVAYVENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPS GSFVPQQDGSADQIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETIIAPTIPQRDG MDDYNDPFYFQGVPTEDYNTPGESSEYRAPTPAVGTPKPRNDVGDDDEPPLNEDDDDD DELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKATGEF DF</aaseq> |
| Gene Sequence |
<dnaseqindica>139..258#369..557#686..853#934..988#1112..1170#2250..2375#4747..4875#4952..5006#5099..5274#5369..5452#6068..6091#gtccgcctccctcctcctcttccccccctcttcttccccaactcgccgccgtcctgcccgcctccaccctttcgcctcctcgttccccgcacccaaaccctaatcctagccgccgctgccgctgccgctgccgccgccatggccagcagcaacgtctccacggtctatatctccgtcatcgacgacgtcatctccaaggtccgcgacgacttcatctcgtacggcgtcggcgacgctgtcctcaacgagctccaggcggtaagcatcgccgattcctcgggtttccggccctagttgtgtctcgaattgctgcttggttggctcgatttgacggttggttctccgattcgggccccggaaaaccctagctctgggagatgaagatgctgcactgcggcgcaatctccgggaccatcgaccgctccaaggcggctcccgcgccgtccgcaggcacccccggcgctggaaccaccccgccggtacacgacctaaacgtgccctacgaggccacctcggaggagtacgccacccccacagcggacatgctgttccccccggtgaggaatccctcaaccgcccccgccccccgccccccccccccgcccccctctttcagattggtctcgatctctgcgaattgagtgattgacaggtagggtattgatgcggctgtatttggatgcagacgccgctacaaaccccgatccagacccctcttccaggaacagatgcagggatgtacaacattcccactgggccttcagactatgccccttccccgatcagtgacgtgaggaatggcatggccatgaatggagctgatccaaagactggtcgcccgagtccctacatggtagaatcaatttggttcttttgttgatttatttatgttgttccccctttggcttggaatttattattgttatgttgcagcctccaccctctccctggatgactcagaggccgctgggcgttgatgtgaatgtcggtatgtgcttatgttatgctcagtttttgttctcaggtctcaatattcgatcgcagttagactgattggagaaatattgactgggtaggagtaatgattttgccaactttgattcatgtgcagcttatgtggagaaccgtgaggacccagataggaccggacagcctccgcaactaactaaggtaaaaatgtccatgttatgttgaaactgaagtttgtttgctgttagcatttgtttttgttatttttggtaagaaatgccctgtgagaattaatcaaattgcaattgcacacaaagtgcaacttactaataactaatatgtagtaagtacttggattaatatttagtggcattccagtcatccagtgttcgaaattggagttgtcactcgctaatatgttttatatggtaaccaaattctagaaagattattacttggatctttggtttatattaccatatccttctgatgggtttacttggatctttggtttattaccatatacttctgatggattatttgggtagtgactagactatggtcaattctagcaatgagaaccgatacaattaaacattatgtgaccaataaatgccatcaatatgtttgtgctagtctttccttgactttctgacccctcttaatttggcatgttaccattacatgcatgaactcgctgcccatgcaagtaaagcatcccttttgaatgggtagtagggacatagtcatcaaatatattaaaggaacaatttccacctcttatagggtggtgatagacattttaaaataaagagggttccccatttttttaatgtattttcgctgtaatttcaggaattaaactgtttctcatgaaccatcattgaaaccgcgtttgtgtatatttttaagccagactacctgtccagtaacctaaccagtacagaaccaagcaccaattgcaactttgaaacattacttttgtatctctattaatacaaaagaagcagcagtggtaagtttaccatccctctgccactcgcatggagtttgtgggattttttttgaagtatcttcttcgaaatatttgtgcctttagaagtttagaacctgcatcatattgcttcaaaatccattgcattgcgcagctattggctgctttcattaagctcaaatttcccagcttgtcagcttctcactaatttgaccattagcttatttgaaatacttgattctactatagtagaatggattcatatttgatttatttcatattgtaggattttctaatgatgtcctctgggaaacgcaagagggatgaatatcctggtcagctcccttctggttcttttgtgccacaacaagatggaagtgcagatcagatagttgaatttgttgtctcaaaggtattattcattaatggaaagtgcaattcagtatcacaatttgtcttgcacttcaatctcataagtatgtgtggtagtgctccttagagttgtttaaggatgccactatagatttggtccctatctgatccttaggccttgttgaaaagggagggtttggatttgaatccttactcttcgatggttcatggaacccagtcaggttcaataattggagcaatgcaagtatatgtcaactagtatatgtcaagaatgtacgtggctatatagtttggtagattatagagcctttctctactcttatgaattcatcttctgttatatgtccataaaattgtttcaaaccgcctatttagtaccaaggtcttttgaattcttgatatggccaaatgtctgactctctgtagagtgttgatttttcattgttgcaatgccaagagatatccttgcatatgcacgagtggatggcaatttaaacatccaaaattcattaactgtcatgtcacatttctaacagtaactagtgggtttgcatgtggaacccatgtagccaagaaaatataacaagtaggatgtaaatatgagggggaacggtaggatgtgctgcatgtgcaccgggaggggtgagatgagttgagtggcgtcaggctgtcagtgggtgtctggttggtggttttgtgggctgggcagtatggcataattaacaggaagtataattagtggtgaaattctaattgaaatgaggataattgatgtataaattaatggttaggagggatgcatgcttttcatattggtttatataatacagctccaacacatgcgagggctctcagtttcttttgttgtacttgcatttttgtctgtcctatcacgttgatatactatattggagtatatttgtcatctaagtagatgtattgattgactagtttaaactgtctaaacctttatatgaatgatatgttgtactctatggcatgcatatatataatgttggctgtattacatgaataacatccacatatgttttaaacagtctgtagcaaaagcataccaacatacttgttttatagtggatagcagaaactatttgctgagctacagaacatgtacaatatttcaatcttaaactaacatccccatcgtaaatgcacataatttccttattatgaaatatcacaatttttttgttccttttcttgttctgttgagttgtactgttccatgtcatcttttaattgccatgatagataaccaatacaacctgataccaaactcaccacgagaataggaaattgaactgaaaacagtattggaaatgttcactcagtgaagcgcgtacaagtatcacagcacataaatattgatcgattcattttttgttcctgaacctaagaactatcattttccatgcatgtgcttccgtccatatgtggttaaaactggcagggcatgtcatggcatgttaaagaaaaaatgttttaggcaaaccgtttaacccagcaataattgaggttgtatgaaaatcatacatgcatcagcttatccccagctgaaaatggactgatgctggttttcatacttgggttaactgcttatgatcaccactagtgtatatcttgtgtggtggcctgctgtaatggagatatactagcattatacatgagcagtgctaatcgtatatggtagcatttgtgtgaagaattgtcctggtagaaatgaaattacttggactaattttactgaacatttcactgggtgataggtagcttgatgtatttaagtggtgatggtgtattggtttttggaagtacttcccagactaagaaaatcatactttgtaaccgagtagttagctagtatagtattaggtttgtgataactgaatcaatgaggcaattaggatccacagatggaattttctaaaagaatttgagaaatctaatggtaattttctaagccaacgcagtagaattttttactttatgtgcacactggagaactctttatgtatgaattcttgagcttgcttaatactggcttgaactcaagagttcgttgtgttagtaggataattgaacttcatgtttctcttctttgtaaatatttggacacttttgagcaaaatttatgaaagttttctgtatggaaatgaggatatattgaatatatgcagtaaattgcaattcaatttatcatatcttcaattcatgatgcattcttattcttgtcctgtagttctcatcctgctcatgttctgttttaccatatactgttaacaagtgcttaattagataatttaaaccaagcttctaatattaccattttgtgtgaggaatcctcattctccttttggtcctttttttaggacaacgcacaacaactttggagttccattgtgaacaagcaaggaacagcaacaaaagaatcttccacaaaggaaacaataattgctccaacgattcctcaacgggatgggatggatgactataatgatgtatatttcgaattcatcaatggttttttcttatatttttgaattttcgcgactaactgggctgtgtctatttcagccattttacttccaaggagttccaactgaggattacaatacccctggagaatcgtgtaagtttctcatgaaaccatggaatttgatcttgtttgagagattagtgtccatgttgctgattttacacatgttttaatttgttccttagcggaataccgagctcccacaccggctgttggaacaccaaaaccgagaaatgatgtaggcgatgatgatgagcctccgcttaatgaagatgacgatgatgatgatgagttagatgaccttgagcaaggggaggatgagcctaacacacagcaccttgtcctcgcacagtttgacaaagtagtgatgcttccttttgtttaataatattgaagtcgattaggttttcctctatttagtgtgtcatgctttatctattcgctggtttatacaggtgacaaggacaaagaaccgctggaaatgcactttgaaggatggaatcatgcatttaaatggccgagatgttctattcaacaaggtagtcaacatgatcttttaatctactttgatatggtggaacaatttggtattcatggaagcatatttatttatttatttttataggatacatgccttgctgtctgtactcatgaatttaatttctagttattttgccacataattgtagtaataaaagatggattgaaaatagtgcatcaaacaaagcttaggtgaagaaactgaggcttatatttttctttttgataatagtgcatgaactcttattttatgttcatgatgaaactccgaagtcttttttgcatgatgtactctgtatacaccgtgtagttgcttttgcacttatccttccctggtgcttgtgtcaacatgatgaaaactattttccttgtaatttgaaagaatctgatgcttgaattggttgtagaatcatatagctaactgttcacataatgatcaatattcataattcctgctcaattagtttcaaccttttgtcggtttgttagcttgattattttcttgcattgccctaaacaaaattatgtcagactgactacatactaatgcttggtaggcactttacttggtgctccaacaattgacatgcatgttacacattatcttgttgcaggctaccggcgaatttgatttttgaattttgtgacaaagaggagctattttagaagctgctgtatcgacatatctttgtctttgacataagagtggggaatgacaaaagcactggtggggggtgggtttgttcctgtggaggctttgctctacccagtgggtttgttaccgtaactgttatcgctgtaaaaaaaaatgctacagttgggactgttgtagacattttcctgagatggttatcttaaagttggcggaggattaccttgtctgatttgtgttatctgtttcaatttctgtaagatggtttaaagaagtaaattttctgttaccgc</dnaseqindica> 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