Difference between revisions of "Os05g0535400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os05g0535400| Description = Choline/ethanolamine kinase family protein| Version = NM_001187573.1 GI:297724276 GeneID:9268113| Length = 3450 bp| ...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os05g0535400|
 
GeneName = Os05g0535400|

Revision as of 20:13, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0535400

Description

Choline/ethanolamine kinase family protein

Version

NM_001187573.1 GI:297724276 GeneID:9268113

Length

3450 bp

Definition

Oryza sativa Japonica Group Os05g0535400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:26645870..26649319

Sequence Coding Region

26645870..26646235,26647819..26647940,26648059..26648254,26648676..26648793,26648903..26648950
,26649029..26649129,26649212..26649319

Expression

GEO Profiles:Os05g0535400

Genome Context

<gbrowseImage1> name=NC_008398:26645870..26649319 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:26645870..26649319 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtggcgagcgagacgaaccagaaggcggcggcggcggggagcagcatcccggagggggcgcggcagctgctgcacgagctggcggcggggtggggcgacgtggcggactgccgggcgctggaggtggtgccgctcaggggggccatgaccaacgaggtctaccaggcgcggtggccgccggcggcggaggcggaggcggcggggaggagggtgctggtgagggtgtacggcgagggcgtggagttgttcttcgaccgggaggccgaggtgcgcacgttcgagtccatgtcgcggcacggccacggcccgcgcctcctcggtcgcttccccaacggccgcgtcgaggagttcatccacgccaggacactctcagctgttgatctgcgtgatccagagatttcagccattatagcctcaaagctgagggaattccacaaccttgatatgcctggtccaaaatctgtactcatttgggacagactaaggaactggctcaaaactgccaagaatttgtgcccctctgacgaagccaaagagttctgcttggatagcatggagaacgagatcactgcgttggaaaatgagctttcagaggattaccagtgcgtaggattttgccacaacgatctccagtatggaaacatcatgattgatgaagagaccaaattgctgaccatcattgactatgagtatgcaagttttggtccagttgcttatgacattgcaaaccatttctgcgagatggctgcagactaccattcagaaaagcctcacatactggactacactaaatatccagatactgatgagcagaagcaatttgtgcagagctacctgagctcttcaggcgaggaacctgacgcagagaaggtcaataatctgataaaaagtatcgagaagtacaccttggcaagccatctcatttgggccctctggggaataatttcggagcatgtcaacgatattgacttcgactacatggggtatgcgaggcagaggttcgagcagtactggctcaagaagcctgcaatcctaacatgtcaggtcgttgaataa</cdnaseq>

Protein Sequence

<aaseq>MVASETNQKAAAAGSSIPEGARQLLHELAAGWGDVADCRALEVV PLRGAMTNEVYQARWPPAAEAEAAGRRVLVRVYGEGVELFFDREAEVRTFESMSRHGH GPRLLGRFPNGRVEEFIHARTLSAVDLRDPEISAIIASKLREFHNLDMPGPKSVLIWD RLRNWLKTAKNLCPSDEAKEFCLDSMENEITALENELSEDYQCVGFCHNDLQYGNIMI DEETKLLTIIDYEYASFGPVAYDIANHFCEMAADYHSEKPHILDYTKYPDTDEQKQFV QSYLSSSGEEPDAEKVNNLIKSIEKYTLASHLIWALWGIISEHVNDIDFDYMGYARQR FEQYWLKKPAILTCQVVE</aaseq>

Gene Sequence

<dnaseqindica>1..366#1950..2071#2190..2385#2807..2924#3034..3081#3160..3260#3343..3450#atggtggcgagcgagacgaaccagaaggcggcggcggcggggagcagcatcccggagggggcgcggcagctgctgcacgagctggcggcggggtggggcgacgtggcggactgccgggcgctggaggtggtgccgctcaggggggccatgaccaacgaggtctaccaggcgcggtggccgccggcggcggaggcggaggcggcggggaggagggtgctggtgagggtgtacggcgagggcgtggagttgttcttcgaccgggaggccgaggtgcgcacgttcgagtccatgtcgcggcacggccacggcccgcgcctcctcggtcgcttccccaacggccgcgtcgaggagttcatccacgccagggtgagcatttttttttggccttctctgtttttttttcttcttcttctttcttgtctgcttgcgacaaaatttcttgctgctcttgatttcgtacttggaaggtagtgttcttcagttattcgtattgagtttggaactttggatgggtgactggggaatctgacgcataaattttgtttgcgaattcagagcttttttatttttcggcgagaaattcagagttgtttcactgtttgcaatcgttttcagcctgcatcgtgggaatcgtgtagtaggtagcgtcatatgaatattaatcagttgcctttctttgaaaatttcctcttgatgatgtagtagatgtactctgcagttgtactgtcgaaatttcaacattgaccttcagaaacttatccgggatgttcattcaaatccgtactcaatgaagtcatcacccaattttaattgtggcagccattgtttttgttctcttgttgactacactgtgcctgcctaatattatatctaaaaattaaaacaaaaaacttttcttaatagcttccgagagactgagatactctatccgtctcaaaatataaatgattttgaatggattggacacattatagtattacgaatcagaccagagagcctgatgagtattacttttggcagaaagcatataaattacttgtcctagtaacttgtaagcatgggagggtgttgtcattagttgacatttctgtttcttgggccctgaaaagaaagacatttctgcttcttggagatgactaatagctgtactattttgttttgttaggacatatgaaactgttctcttgctgaataaattgtacaacatgaatcattttctttttccttcataacttcttgacggctttagtgatagcttctgagcctggcagaatgctgtcgttagttagcaattatgcttgctgaagatgtcatacagttcagctactatgtttaatgatggttgtctatgaaattgttttatggtttatcatatttaattgcttatagttcaacgatccaaatatccacatgaaagaacaagtgtgtgtattgtataacgtatctaccgttctacctgcttactgaaacgaatctacctcgctgaacacagccgtgaataaaaaaaagagaagacatagttaattttggtgagcacagccataaggaatcaatttggtgtctgaacacctcaatgagcactggtttaatcatgcaagaaatcttttgattagtaagactgatgaccgagttgctaaaggtcacagaacacggcgtctgagcttcagaataaggcatcagcccgattactttattaatataatatatagggggaaaatatggcatggacaaaacaaagtaggatgggaatgttaatcttttttctcaatttgtttcttcactttcaaaagaaagcatcatgttctgtttgtgttgctgggaagaaccgaagaaggacgattcaaaaacacaaagcattacgatatgatgactataaatatgtttatataggatggtgggtccattaatgttcaaaagaacaaaaggactgatgcaaatattcctttcagacactctcagctgttgatctgcgtgatccagagatttcagccattatagcctcaaagctgagggaattccacaaccttgatatgcctggtccaaaatctgtactcatttgggacagactaaggtattacttaatttgtgtttacactgttttttagcattgcatacttgtaaaatgaaacacatcatcgaagtaaaacactaagttactaactgacaatgcctatgcacatcttcatcaggaactggctcaaaactgccaagaatttgtgcccctctgacgaagccaaagagttctgcttggatagcatggagaacgagatcactgcgttggaaaatgagctttcagaggattaccagtgcgtaggattttgccacaacgatctccagtatggaaacatcatgattgatgaagagaccaaattgctgaccatcattgtaagttcttgctccattgtgtatgtttgattcatctgttccattactattttttgggggaacgagcaagagacttggacatctttatattaagaagaaagctcaatttcgtctagagacatcagaccgaccacaaggaaaaaggagagttaaaccatctgctttgttatttcacatcacacacattgatgcgtcttggtactccgtataaccttatcatacattgagttgtatgttactatctccaggaataaagatttcacttctgaaacgacatactttatgaaagattatgcatattttccttattagccttcatgtatgtcatgtctgtttatgaacctgaagttttatatgtagccaggcgaaattaacaaacatatcgtcttgatcttactggttcctcatcatgcctacacaggactatgagtatgcaagttttggtccagttgcttatgacattgcaaaccatttctgcgagatggctgcagactaccattcagaaaagcctcacatactggactacactaaatatccaggtatttcatattagctgtcaaagttattaatttgtacattattgttctcccttttatccattttggtcaccctatattttctctgttcgttcttgcttatctgcaacagatactgatgagcagaagcaatttgtgcagagctacctgagctcttcaggtaagcatgaagtttgtcattaacatctcattctcccttctctattccataaaaacaataaccgaatatccataataggcgaggaacctgacgcagagaaggtcaataatctgataaaaagtatcgagaagtacaccttggcaagccatctcatttgggccctctggggaataatttcggtttggtttctcctcagtttcacttgcctccaactgtgtaagactgaacaccatgtaaacatccaatttacatcttttgcaggagcatgtcaacgatattgacttcgactacatggggtatgcgaggcagaggttcgagcagtactggctcaagaagcctgcaatcctaacatgtcaggtcgttgaataa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0535400, RefSeq:Os05g0535400