Difference between revisions of "Os06g0217300"

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(Created page with "{{JaponicaGene| GeneName = Os06g0217300| Description = Similar to Transcription factor MADS55| Version = NM_001063684.1 GI:115467099 GeneID:4340495| Length = 10711 bp| De...")
 
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==Annotated Information==
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===Function===
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===Expression===
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===Evolution===
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==Labs working on this gene==
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==References==
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==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os06g0217300|
 
GeneName = Os06g0217300|

Revision as of 20:19, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0217300

Description

Similar to Transcription factor MADS55

Version

NM_001063684.1 GI:115467099 GeneID:4340495

Length

10711 bp

Definition

Oryza sativa Japonica Group Os06g0217300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:5951600..5962310

Sequence Coding Region

5952020..5952029,5952598..5952749,5952893..5952934,5956946..5956987,5957087..5957186
,5957300..5957361,5958733..5958814,5962004..5962185

Expression

GEO Profiles:Os06g0217300

Genome Context

<gbrowseImage1> name=NC_008399:5951600..5962310 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:5951600..5962310 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgagggagaggagggagatacggaggatagagagcgcggcggcgcggcaggtgacgttctcgaagcggcggcgggggctgttcaagaaggcggaggagctggcggtgctgtgcgacgccgacgtcgcgctcgtcgtcttctcctccaccggcaagctctcccagttcgccagctccaatatgaacgagatcattgacaagtatactacacattcaaagaacctggggaaaacagataagcagccttctattgatctgaatttagagcacagcaagtgtagcagtttgaatgaacaactggcagaagcaagtcttcaacttagacagatgagaggtgaggagcttgagggattgagtgtggaagagctgcagcagatggaaaagaacctcgaggcaggactgcagcgggtgctctgtacaaaggaccagcaattcatgcaagaaatcagtgagctccaacgaaagggcattcagctggcagaagagaatatgcgcctcagagaccaaatgcctcaggtgcctactgctggcttggcggttcctgatactgaaaatgttcttactgaagatggacaatcatctgaatctgtgatgactgcattaaattcgggaagctcgcaggataatgatgatggttctgatatatccctgaaactagggttgccttga</cdnaseq>

Protein Sequence

<aaseq>MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVA LVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNLEHSKCSSLNEQLA EASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQL AEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESVMTALNSGSSQDNDDGSDISL KLGLP</aaseq>

Gene Sequence

<dnaseqindica>10282..10291#9562..9713#9377..9418#5324..5365#5125..5224#4950..5011#3497..3578#126..307#gtttctctctctccttgtctctctgtgctgttgttgttgcgggtgaatctgcttggatttcgtcggagttttctgtcgcggaggaggagggggtggtggttgatcggaggggaggggggagggagatggcgagggagaggagggagatacggaggatagagagcgcggcggcgcggcaggtgacgttctcgaagcggcggcgggggctgttcaagaaggcggaggagctggcggtgctgtgcgacgccgacgtcgcgctcgtcgtcttctcctccaccggcaagctctcccagttcgccagctccaagtaagcgcgttctctgatcccctctctctctctactgttgatgctgctactgctcacccgatgatctcaccctttttttagttttcgatccgctcgagatttttttggggggtttagatctagctacctgctgctgtgttcctctctcgtttgaaagggctccagatcctcccggtcgctagggcttcctccctcttctacagttttacttcttcggttttagggtttgtgtttggttgatgcgatgcttctcgcgaaacgccacttcgggatcgagccttcttttctacttccagaacaatcatccttgcggtttttggggctgattcctgggtcgattccggtggattctaccacccgggatggtcctccgaaaatggggaatttttctactgtagtttcaatcacaatctccacagctaagtacggggaaaattcgatcgcttgctttttgcagatgagagatatgcatatttctcgtgtattccatttgctttcatgtggagaggaacactctaaaatccggttaattttgcttacgtacgctgctcgataaaaaataaatcccaaaaccgatcggcgcggcgcgcggccttgggcgcctccgctaatcgcggcgccgccgtacctgtgattttatgtgtggtgtggcatggcatgccgtatgcatgagccgtcaaccaaccaaccaacgaaccagctgccgatcagttcatcctctcctactgcctctctctctctcgtggtctgcgcaggtggccggctggtactttgctgtagctatagctatatatgggatcactcttgtagcctttgggtatttgggcttgctagcttaccattattggtgttctccaagagagaaaaataaacatttcaagtaccaagagggtacgtggcctttgcatgttccatatataagtatgtcgtccaagaaaaaaaagggttaatttagtatagtaggactatacgcatataagcatgcccaaagagaagggggttaattaattaatataatgatgagtagtacggtactccattttaagagtgtgatcgatcttgatcagtttctttttggcagtcgaagctatttaagaatataattgcatcatttagggattgagcgcatgcatcagagaacataattgtatgcacgttttctgaagctcctttgtttaatttctgtgtgatttttttatgtgcctatatagttgactgcatatgggtgcttctttcccaaaaataatggaactgtgcgttcttcttttggaacgtactgtccttgggtgtaacttaatatttgatgcttgtaatttacaacttgatatatagttcatgataacttgtttcgttcttataattagaaccatgccatgaactttataatagaataatctcgtgtcatttatgtgttttgtgtaactaacaatgaaggtgagaagatcaaggtcgtagtacctcataaactttacactattcctccactattccttttttagggtcctcattttatatacttttttctacttatcatttggaacatctacacagttctacaatacacctaagacgctaagaccattatctttcacaatcttatgtcccaagccgctaagtataattgtttatctattatatgcccaatatcatgctctctagtttttcttccctacaatttgtcatctcgttatttctccatcaacgtacaactccattatgtacgaggaaaagatcattccgctatgatactatttgagtgaacaattatcagacaacaattaaataggagtaacatagcatttattgaggtgaagttaattttcagaagggcaaatgttaacgaagacctggtaattaaactggtcttttcgatctccatgcccaattgcactgatcgagaacgtaaagaccttggcatagttttttttatggcacctatatattcagtatgtatttcagtaggaattattgtacaagagggacaattcatatcatcaaaacctactggtggcatttctaattttcttacatgactgaactttacacttttgtgcacatattactagattagtgccatagtttttgtaagttcaagtgcgtgctgctaaactgtatcctagttgagaacggtgggagttatattatataacttaatttttttctacaaaacgttgaacagaaatcactggacaaccttaagtcagataagaaactatgcacactgttataatttaagatcagtgattctgctgacattattactaagagcatatatgatgaagacatcaaaatgtactttaaacatgggcatgcgtattacgagtagcacataactctagcagaaatgtatgaattctacacaagctcagcatatccttggctggctggctacatcttcttggagaacatccaaagctatctttttccacccctttgaaaggatataaaatattgtgcaagtgttagtccaacgcagtttatattatgattacacaacaatcccaattcccagggtttcaaattgaagtttacttctagaattaggttccaaccattaagcaatacgtacgtagtatattctttatatatgcttatgtttttttcctgagaaaaatatgcattgtagtttagaccaatgggccagaattcatctgacaacaataaacaatatgtacttgagtggtgtctgactggtttccttcatgttaccctcttttgaatatgggattcctatagacaataacagaagaaacaaaaaaaatgcattatattagattaaattcagagtgctttagacaatcatatatagagtttaattttccattgatatatatgaacatgatatgatatgataattgaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgatgctcgcagaatctcttaccaattttcagcgtaactagtaacaaataattaagatttattctcttattaaagaggctgtacttgaaggtgttagactatagatggttttgtatattagatatacattattattatatcttcagagttcaaacccctttgaagtcaatttacaaaaccttgcttgaagacatgtattttatagataccgcatgtataggcagcttggtgcaaatactgattattggtatttttctttggtcaagcagtatgaacgagatcattgacaagtatactacacattcaaagaacctggggaaaacagataagcagccttctattgatctgaatgtatgtaaagcaatctctgtgttttgtagttcataatcataagtggatttgtactaactagtattagatcatatgtggtgtaatgtttcatatatttatatacatgcataagtcaacatgcaatgataacagcactttttttttctgcaaacagttctgctgactatgtttagttctttagagcaaatttaatagtatagcccactactagctccaattcatctatagtcaatctaatagccaattcatacaatagttgcttactatactactaatatgtggtcccacctatcatacacacattgcgtcttggagtccgtgctgcagctggctacagatctgtagcctgctgctcttctctctcatcttttatctcattaaaatatgtttacagctggctaatagcctgctattgtacctgctcttatagctagttgcttatgcttaattaagaaattagttacacatgtaaaggtataactttacccactcatataatgaaaatattcttaaattaattaactaggacagtagtggagggtgcagaaatcttctcacttattttttgtcttcccaaacagggattttttttaaagaaaatggttagattaagaaaaaaaatcatgctaggttattactcgatctacagttgtaacggattgcagccttagttgtaccaacttataaacgattggatcagtagcatgttgttttttttacattatatatatatatatatatatgtgtgctagtttcatttttgagtattttataggttccccatattaactcaaaagcatgatctctgcaccattaaatttttcatgagtttagagcacaacaacgatgtccacaaacttgtagaagtgcgcgcttcatatgatgatgcaagcttagagcaagtttaatagtatagcccgctactatctctaattcatatataatcaatctaatagccaattcatacaataattgcttactatattattaatatatggtcccacctgtcatgcacacattacgtcttggagtctgcgctgcagctggctatagatctgtagcccgctgctattctctctcatcttttatctcattaaaatatgtttacagctagctaatagcctgctattgtacctgctcttaatgaaaataagaccatgtaattaatgtaaatgtgagacactatttaatatcctggatctgcaaagaaaagtgacataaagtactaactccacacatttatatgtcctctaacctaggaatataaatgcaagaatctcatagaaattgtctttgtaactagccttcttcttaattatattgcttcgtacatatactaacagttatgcatatattcaccttcttcttcagttagagcacagcaagtgtagcagtttgaatgaacaactggcagaagcaagtcttcaacttaggttaattatgttctgatccatattgattttattatttcgatatatcacaaaattgtttgcaacagaaatagcccgtattataagttgataatgtcacaattccacatttatagacagatgagaggtgaggagcttgagggattgagtgtggaagagctgcagcagatggaaaagaacctcgaggcaggactgcagcgggtgctctgtacaaaggttgggtgtcatccgatggtgttcccttttcagcttcgtatgaattggcaggcacaatatcaagtttttcagacaactaatcaatatatgcttatgcaggaccagcaattcatgcaagaaatcagtgagctccaacgaaaggtaaacaaaatgattagattccactagttacttttgttaacctcgtaataatgtccttaattacattgatttcactattgtctgccaaacatgttagtctagttaagggtattttgaatcatagctagtaattctctatgggttctcaaaattctgtgtccctgtaagcagctaataagctagatcctagaggaaaaaaaaagttagtcacaacttaattaccgtcagttgtataaatttaaccgagtgaaaataggttttgtagatgttttattgtcattgttgtactgttatagatatattggtgataaagatgattattaatacaacaagacactagtacagaacccataatatgtgccagttgagaacccccataggtgttggatttttcaactggcaccctattagaggcactgatggggagaatcaaaagtgctagtataggaaccggtacctttgaggtgtcacgaataaaaaaaactaaaactggcttgatgcatcagctcgaaccaaagccgatgctttgagcgttccccatagcccccaaggtttgattgacatccaagaacaaacacacataataacatccaagaacaaggtcgtctctgagctcgattgacattagaaatcattaacatacaaactcacagaatcaacaacaataatatgaggaggttcactggagagaaggtcgccatccccgttgctgctcaccatgggtgaaggtgaaatctgcttgctcgcccaccaccatacaagccagatttgtcccccggggatctctagttctactgctcgccggcttggcagagaggaggtggctggatttggctgctcccgagcagcgaacagtaggatcaggagatggaggcgtggtgactagcgaggaactccatgaggcacggttggtgttcgcggatgatcagatctggtagaggtcaacaaggacctcaaggccattgctcgccggcttgggggagaggacacgtggccacgccgctcgttggctaagtagagaggagccagctgcgccgctcaaaggctatgggagagggcggccccactactcacgagttggggagagagaaggcagccccgtcgcttgtcggcttgggggagaggaggtggccgtgctgcccataggctaggggagaggaggcagacggccgaggggaccggcgtgtcattcgagaagagagaaggctagggagataaagatcatgaagaaaggatggtgtgttggggatggagtcagggagataagatcgagaggtacctaataaatcgaggtgggctcccacagtcccacattttgttggctcggctgcatccttaacagtgctgtgtttttgttaaaactagcaattatatccacattataagttttggtttattaaaaaattcggtacatatattttatgtatcgattgattttctttaataatctggcacctataaggggtgataggtgctggttttcaatatttaatccatgtgcgggttttgggaggataggaaatatatacctcatgtgctggttttagatgaccagcacatgagggtgtcctcaattaatggttttgtagtagtgagtgtacggcaaaaactatgcagtgtagccagttgcaagaaacttgtataaaatggcgctaaattagtggaagtttacaatatgacatacaacaatatactaattctgaagatgtcaatatgatatgctttttggagtatttctagggaggacacactgctagagaacgggtcatctctgatggttcagaaagactatcaacggcgggttgggtgagcaacccgacatttaactattggtcagtggtgagaatgacacccccgttaatgatgaaatcatatgtaacggtctacaagttgtgacccatcacagataggaaaattctgcacaaaaaaggccaaaattgccatgactatgatagggaaatttggccaaaaaaatccaaaaaggttgtgcttgtcgccacgccgccatcatttccgtgccatggctcttattgttctactatccccgtcccgcgcgcagcttcttgtcactgtactattcctgtcatcgtggtgcacggctgcttgtcgatgtcaccatcatcatcttccctcaggtggctgaatccatagttattggaactggactagaccggtggttggaccgaaaaaactagaactagagcctccgccagtttggtccagctaaaagaccgtttgcgcaattgacccggtagaaaccggttgggtcacccgtttttgtagaaaaattgctattgaactggaattgaaccaccaaggattgccttgtgcaaggtcacatgcgtcctggaggctgttggagagggaaaatgtgggaaaaagtacgcatgtgggattcgatcccacgatcacatgcatagaagcaaaccaaacgaccagcatgctacgatgcaccttgtgttttgaaagaataacctatctatttaaattgcattgatccgcttcaaaccagtggtttaactggttgaaccaataaatcatcaaaacgagagcctcactggttcaattaccagtccggtctcaataactatggttgaatctagccaccacgaggtgagagtggtcagatctaacgtccctcgaccttggggaggttggatgtagcatccctaaggcaatgtccaatgctaaagggtggaggagatagcggccagcccttggggtggagcagacggcggctaacgctcgggatctagccaacatgcacgaggttgattgtggtcaaatccggcgtcccccgaccttggggaggccactagtccatgaggtggtgcccgacgcttaaggatgaaggaggtgccagtcgacacttggggatttgggagtgagagagtggtcgtatactttgtagtagggtcatctgtggcggtccgaaaattaagcccatttgagatgatagctcatcctaaacatgtgttactaacaccgacgctgagatgtctttatcatttgtggcggttcatatgaccacacccatcacatcggggtcatcatggttgatctttatttacagttcatactttgacccattgtcccatgtagtagtatcttaaagtttttttttccagttggagatgaggtcatcaaagatgggtcactttgaccctctacagatggcccgtcaccgatgtcccattctgtagtggtgactagaagtcgagaactagctaaagggtactaatattcactattcagtgccggaactttatatatagcaaaaattattatatatagcaaaaattatattgacgagtgaaacatgtgcatgtactatattggaatgttgcttgcagacggtatacgatggcaataaatcaataatagactgtcaatgaaatgctgaggttcgataggatctctgtacgagagtcaatttttgttgtgaacttattgcacaatttttcaggcatgaaatgttttctcgacatatattggatggaaatgttatcattcagcagcttcctgtttatttatgcatagattttcagatacagtaaactttctcgtgaggcttatgaggagtattatttatttagaaattgatattttcaccgatatccaacaatgcaactaaggattacatttagaatagaattttactccctttgctcttaaatatttaatgtttaggataagattcagtcaatcttttaaaaagttgaccatcaataatttgagattctcaaatgtttagtttaaaaacaaaagaaatgatatatatggatttacctttaaaaataaccttttagatttcataaatttattctaatacaaaactgattgtcggaattacaaaattttgataaaattttgtatgaacgtaaaacatttatgtctggatataatattttgtatttatcagcacaaaacgtaaaattgatttggttggttttgaaaatgaatcaggtataatttcacaaatcttatgatacaatttatttgttcttgtagggcattcagctggcagaagagaatatgcgcctcagagaccaagtaattaatacatactgtgtatatgcgttcgaaatatttgcatagttttacaaaataaaatgcaaattcgaggaccctttggtttctccatatcaggcacggcggaatatgcatttatattctgtgcatttgcttgtatgcagatgcctcaggtgcctactgctggcttggcggttcctgatactgaaaatgttcttactgaagatggacaatcatctgaatctgtgatgactgcattaaattcgggaagctcgcaggataatgatgatggttctgatatatccctgaaactagggtgagtttccgctggaacccttgtcgcttctttgtagctaatttaaattttctcagatgggacaattttaataattctgctcgttctgttggaacatgataaaacgaaatttaaattctttctagacgattgaatacgatatcatgatcttttcccagaactcaattagtttttaatatacttaaggatttgatcttttactagctagttggtcccggcaggtaagctttccctgcagatggtatccattttcacactaaatccaaatgaaaactgcactaagggataaacgacaaagaaaatcaacttaagaactatgaattattgattgaaataatgccctttttattacttgattcgtgcccccctaaacctgagatcgatcagaactatgtactctgaatgtgttgtgttctccttcaagggtgttaagttaccaagcgaatttattttcctcatgtaacttatttctttgtgctgttcaacataagcgcaaatattggatggctgtgtttggatgtagagaccggtttaatccattctctcttaaaaaaattgatatcttcaggttgccttgaaataaaaggaccagctagagagctgagaaatgggatgacgaccaccatgaattatttgtctgtgtgcatgagtggatgaagttggaagttaaatgcatcttaagaagatcaagaagatgtcatgctatgagattaccaacaaggctgcaataatcctatcctatgttaaaaaggagatcgattgacttgtcatcctatgcctgctgatgcaatggtccggttgcttggatctttttttctcaacttgtactagtgtaccatactaccttcgtcgcacttaatttaaatgcgacatgtacgtatgtatcgttcgcttaattcgtgcaagttatgtacgtacctgtatgggaactgtatggaaacttgtgacctcggctgagacttattattggcacaattattaagctagtcattctcatc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0217300, RefSeq:Os06g0217300