Difference between revisions of "Os07g0182100"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os07g0182100| Description = Similar to Tryptophan synthase alpha chain| Version = NM_001065584.1 GI:115470900 GeneID:4342571| Length = 3140 bp| ...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os07g0182100|
 
GeneName = Os07g0182100|

Revision as of 20:32, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0182100

Description

Similar to Tryptophan synthase alpha chain

Version

NM_001065584.1 GI:115470900 GeneID:4342571

Length

3140 bp

Definition

Oryza sativa Japonica Group Os07g0182100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:4362655..4365794

Sequence Coding Region

4362843..4362977,4363072..4363131,4363228..4363305,4363552..4363629,4363950..4364026
,4364416..4364590,4364698..4364844,4365477..4365716

Expression

GEO Profiles:Os07g0182100

Genome Context

<gbrowseImage1> name=NC_008400:4362655..4365794 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:4362655..4365794 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttcgcgctcaaggcctcaactgcctccgccgcggcggcgtccacggcctcggcctcggcctcgtccctgtccgtggctgcggccgcgcccgggaggcgcggcggcgcggcggggagggtctcgttccgcggggtccctgctcccatggtggcgatcagggcggaggcggctgccgtcggggaggacgagcgcgtcatctccggcaccttcgccaagctcaaggagcaggggaagaccgcattcattccattcatcactgctggtgaccctgacttggcgactacagcgaaagcgttgaagattcttgatgcttgtggttcggatctgatcgaattgggcgtgccttactctgacccattggctgatggccccgtcattcaggcttctgctacacgtgcactatcaaaaggcaccacatttgaggatgttatctctatggtaaaggaggtgatacctgagctgtcctgccctgtagcgcttttcacatattataacccgattctgaagcgtggcatcgcaaacttcatgactgttgtaaaagaagccggtgtccatggtcttgtggtacctgatgttcctctggaagagacaaatattttgaggagtgaagctgctaagaacaaccttgagctggtgctactgacaacaccaactacaccaacagaaagaatggagaaaattacaaaagcttctgaaggatttatttatcttgtaagcactgttggagttacaggtgcacgtgcaaatgtcagtggcaaggtgcaatctcttctccaggatatcaagcaggtcacggacaaagctgtggctgttgggttcggtatatcgactccagagcatgtgaagcagattgcgggatggggcgcagatggtgtgatcattgggagcgctatggtgaggcaattgggcgaagctgcttcacccgaagaaggattgaagaagctagaagagctagccaagagcctgaaggctgcattgccctga</cdnaseq>

Protein Sequence

<aaseq>MAFALKASTASAAAASTASASASSLSVAAAAPGRRGGAAGRVSF RGVPAPMVAIRAEAAAVGEDERVISGTFAKLKEQGKTAFIPFITAGDPDLATTAKALK ILDACGSDLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKEVIPELSCPV ALFTYYNPILKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTT PTTPTERMEKITKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAVAVGFG ISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASPEEGLKKLEELAKSLKAALP</aaseq>

Gene Sequence

<dnaseqindica>2818..2952#2664..2723#2490..2567#2166..2243#1769..1845#1205..1379#951..1097#79..318#acacgctcgcctcctccctctatccccgactcgaccaccaccgccgccgcgcgccatcgccgtcgaccaccaccacccatggcgttcgcgctcaaggcctcaactgcctccgccgcggcggcgtccacggcctcggcctcggcctcgtccctgtccgtggctgcggccgcgcccgggaggcgcggcggcgcggcggggagggtctcgttccgcggggtccctgctcccatggtggcgatcagggcggaggcggctgccgtcggggaggacgagcgcgtcatctccggcaccttcgccaagctcaaggagcaggggaaggtgagcgcgggggggccgttcttcgcgcgcgtttcgatttgattttgattttatgccaccaccccccctcctcgtcgattcggtgcgtggggatgcggccgattcgtcatctccgcgcgtgttgggtggggttggggatgtcgtggtgtggatctcctctccccgtttgctcgcgatggatttgattcgtcgcgattcgtgcgggggtaatcgttgaatcgttctgcggttgcatacttgcatttcagtgcggtacgattggatggatttgcatccggtgatacaggccgcggttgatggataatccttatccagttttcccatgcgtcgtgggtttaaattcgtttcgaaaaaaaaaatcgtgccgtcgcggtcaggattgatgatgcgttggaatcatctcgaggataattgaatcattgtgattagtgttggatgagcccaatcacctttcctttattatttgtgatatattactatgtagaataccaattgatatgagatgacatagttatatgtctcctaagttgtgataggcatccagatcagcattgagttcataccttgcctttccccccttctgcaatccactttatgtttgtttactctcttatatgtttgaaaactttcagaccgcattcattccattcatcactgctggtgaccctgacttggcgactacagcgaaagcgttgaagattcttgatgcttgtggttcggatctgatcgaattgggcgtgccttactctgacccattggctgatggccccgtcattcaggtataccatgaaaaacctctgctattgttctatgatgtttgatggtggttgtgagtcttggttatgagtagttttaagtttttaaccatttcattgcatcatttcaggcttctgctacacgtgcactatcaaaaggcaccacatttgaggatgttatctctatggtaaaggaggtgatacctgagctgtcctgccctgtagcgcttttcacatattataacccgattctgaagcgtggcatcgcaaacttcatgactgttgtaaaagaagccggtgtccatggtatgtcctagatattttctgttatgaatttacaaatgctattttatataaaatggcattctactcaatacacacctaatcaactagaaggggtattccatttcatatcttgtatttcaatttggactaacattaatttaggcattcagaaaattagaacttgtataacaacatagacaaatttacaccactgatatttgtagagagtgtcatcagactcccacttgtcagttgttatgtgtacattcttgcatttcaatgtatagagttatagactataaagtaaacccttttctagctgaactatggagtaaacctagaacaatatggtagtgttgaactgtttataaaggtacctatcaagtttcttatgtattactgtgttgcaggtcttgtggtacctgatgttcctctggaagagacaaatattttgaggagtgaagctgctaagaacaaccttgagctggtaggtccactctcatgctatgaaccttttaaaaaagctctaatattgttctgtcagtattgctttgctgcaaccgtgcataactgagtaatttaattttgggtacatgggtcctgagtcctgaacttccataattctgttcttttcccttcatatatacaagatgtttgtttccatgtggtactagcaagcttatgttgctgctgattaccaaagaacattgtgtcgttctgtctatgtatatgtaatttgagcccacatcattttggttatgccatttcagttaatgaatatgatttattttgcatggatgcctacaggtgctactgacaacaccaactacaccaacagaaagaatggagaaaattacaaaagcttctgaaggatttatttatcttgtgagcttctatatctttttttaacttatttacgaaatctaatgaccctgttctcatatagcatatattcctgatggccagtcagtaattttgcacctcatagacctcaacgttctaaaattaaactgaatgcttgtaatcacagtgcactgctggaaatttgttattatcaaatctcaagaatctgtttgatgatagcgaactagatttatgatggggcttgttgctaactcctatgttattcaggtaagcactgttggagttacaggtgcacgtgcaaatgtcagtggcaaggtgcaatctcttctccaggatatcaagcaggtatgcatcattcatcgtcagtgaattggtgttggcatctccaaaacatttatataacattcaaggatgctcatagaatctcttgttcttttctaggtcacggacaaagctgtggctgttgggttcggtatatcgactccagagcatgtgaagcaggtaaatcatactcaagaacttatgttcaaaacagtatacgtttaattccccccaattcattgcatgacctttgtcgcttcattccttgtaacagattgcgggatggggcgcagatggtgtgatcattgggagcgctatggtgaggcaattgggcgaagctgcttcacccgaagaaggattgaagaagctagaagagctagccaagagcctgaaggctgcattgccctgaaacaatcagttccatgaggaaagaaaatacagtccatttttttgtagtcaggtttgaagcatagtattgggagcatgacttttgctattggggttttcggggttactgttgtctgttgaaaataattaagtcattgtgttagttgcttgaacgaataaatcaaggtaagaatgatactaaatgttgcg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0182100, RefSeq:Os07g0182100