Difference between revisions of "BGIOSGA000074"
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[[Category:Indica Chromosome 1]] | [[Category:Indica Chromosome 1]] | ||
[[Category:Chromosome 1]] | [[Category:Chromosome 1]] | ||
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Revision as of 10:47, 27 October 2012
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Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
BGIOSGA000074 |
|---|---|
| Description |
Putative uncharacterized protein |
| Definition |
Oryza sativa Indica Group BGIOSGA000074, complete gene. |
| LocusTag |
P0401G10.24 |
| Ensembl Transcript ID |
BGIOSGA000074-TA |
| Ensembl Protein ID |
BGIOSGA000074-PA |
| Length |
5949 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:46398476..46404424 |
| Sequence Coding Region |
46404247..46404424,46403996..46404135,46403401..46403492,46403140..46403253,46402336..46402666 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome01:46398476..46404424 source=RiceIndica01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome01:46398476..46404424 source=RiceIndica01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGCTGCTCCGCCTCCGTCCGCCGCCGCAGCCGGCCGCCAGCCTCGCATCCTTCCTCCCCTTCTCCCCCTTCAGGCGCTTCCTCCACTCGCCGTCCTGGCGCCCTCCTCCTCCTCCTCCTCCGCGCCGCCGCCGCCTCCTCTCCACTGCCGTCGCCTCCTCCTCCTCCTCCTCCAAAGGCTCGACAAGTCTTGAGGAGCGATACGATGTGATTGTGGTTGGAGGAGGCCATGCCGGATGTGAGGCCGCGCTTGCGTCGGCTCGTCTTGGTGCGCGCACCCTCCTCCTTACGCTTAACATTGATCGGATTGCGTGGCAGCCTTGCAACCCTGCCGTGGGAGGGCCTGCAAAGTCTCAACTTGTTCATGAGGTAGATGCCCTTGGTGGTGAAATGGGGAAAATTGCAGACAGGTGCTACCTACAAAAGCGTGTGCTAAACAGCTCAAAAGGCCCTGCTGTACGTGCACTGCGTGCTCAGACTGACAAGAGGGAGTATGCAGTAGAGATGAAGAAAGTTGTTGAAAGCACACAAAATCTTTTCATTAGAGAGGCAATGGCTACAGAGGTTATGATAGGCCAGAACGACAATGTTGAGGGTGTCCGCACTTTCTTCGGCATGGACTTTTATGCACCATCTGTTGTACTTACCACTGGAACATTCATGAGTGGTAAGATTTGGGTAGGTAGGACTTCAATGCCTGCCGGGCGAGCTGGAGAGTCAGCTTCACATGGACTCACTGAAAACTTGCAGCAGTTGGGTTTTGAAACTGACCGCTTAAAAACTGGCACACCACCACGAATTGATCGCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGGTTGGCTGGTTTAGTTTTGATCCTGAATTCCATATTGAGAGGGACCAAATGTGCTGCTATTTAACAAGGACTACAAAAGAGACACATCAAATTGTTAGAGATAACTTGGATGAAACACCAACTTATGGTGGTTGGGTAGAAGCAAAGGGACCAAGATACTGTCCAGCAATTGAAGACAAGATTGTAAGGTTCAAAGACAAAGAGTCCCATCAGGTATTTCTTGAACCAGAGGGCAGAGATGTTCCTGAGCTTTATCTGCAGGGGTTTTCCACTGGGCTTCCTGAGCGATTGCAATTATCACTTGTGAGAACACTACCGGGACTGGAGAATTGTGTGATGCTAAGGCCGGCTTATGCTGTTGAATATGATTACTTGCCAGCTTACCAGTGCTCAAGATCACTTATGACCAAGAAGTTTGAGGGCTTATTCTTCTCTGGCCAGATTAACGGAACAACAGGATATGAAGAAGCTGCAGCTCAGGGTATAATTTCCGGAATAAATGCAGCTAGGCATTCTGATGGAAAGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAGCTTTATCAATCAAAGCAAGCCCGGATTAAAGAGGAAAAAGAACGATTGAAATCTACAAAAATCCCAGGAGGTGAATTTGCTGCTGCGGTTACCTCTGTATCCAACCAACCTGTAAAAGAATCATCTACACTTGAAGCCATACTGAAGAAGCCACATGTACAGTATAAACTTCTTGACAAACATGGATATGGAAATGAACATTTGTCTCGAATTGAGAAAGAATGTGTGGAGATTGATATTAAGTACGAAGGTTTTATAGCACGGCAGCAAAGTCAATTGCAGCAGATTGTAAATCAGGAGCACAAGAAGCTTCCTGAAGACTTAGATTATCATTCAATGACAAACCTGTCACTTGAAGCTCGTGAGAAACTTTCAAAGGTAAGGCCACAAACAATAGGCCAGGCTAGCAGAATTGGCGGGGTGAGCCCAGCTGATATGACTGTTCTTCTCATTTGGATGGAGAGCAACCGTCGCATGGCTAACTACAAGAGACAGCAAAGCACGTTGAGATCTGCTGCGACCAAGGCAGATGATTCTTCAGACGAAGTGGTTCATGCCAGTGCCACCAATGCATAA</cdnaseq> |
| Protein Sequence |
<aaseq>MLLRLRPPPQPAASLASFLPFSPFRRFLHSPSWRPPPPPPPRRRRLLSTAVASSSSSSKGSTSLEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIREAMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERDQMCCYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEGRDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKKFEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKERLKSTKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKECVEIDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASRIGGVSPADMTVLLIWMESNRRMANYKRQQSTLRSAATKADDSSDEVVHASATNA</aaseq> |
| Gene Sequence |
<dnaseqindica>1..178#290..429#933..1024#1172..1285#1759..2089#2679..2858#3005..3085#3350..3568#3651..3793#4416..4582#4714..4931#5308..5400#5752..5949#ATGCTGCTCCGCCTCCGTCCGCCGCCGCAGCCGGCCGCCAGCCTCGCATCCTTCCTCCCCTTCTCCCCCTTCAGGCGCTTCCTCCACTCGCCGTCCTGGCGCCCTCCTCCTCCTCCTCCTCCGCGCCGCCGCCGCCTCCTCTCCACTGCCGTCGCCTCCTCCTCCTCCTCCTCCAAAGGTAACGCTGCTCACCTCGTAGTGGTCGATGGGGATCTGAGTATTTGCGACCACATGAAACAAGCGAAAACGATTCTAATTGATGGATGGGTTTCTGCTATTCTGGCATTAGGCTCGACAAGTCTTGAGGAGCGATACGATGTGATTGTGGTTGGAGGAGGCCATGCCGGATGTGAGGCCGCGCTTGCGTCGGCTCGTCTTGGTGCGCGCACCCTCCTCCTTACGCTTAACATTGATCGGATTGCGTGGCAGGTCTAACACTGAGCTCCATTGCAATTTTTCACTTACTAGATTTCTTCATTTGTGTACTACCATATCCTTCCATTAGACCAAATTGTACTTTCTTTATGATTCCTGTATCTTGGTTACAAAAGCAAAGTTAGGTAGTAAAAGATCATATGCTAAAAATATGTGGTCATTGATTCCTTGTGGCATAGTTAGTTAAAATCTGCAATCATATACCCCATACAACATGAAGCAAGCAATTGAACCATGTTTCATAAGACTTGTATAAGTGCATGTCAAATCCACGGATTTTTCTTAGAAAATTATGATATGGCATGTATAGTGGATGAAATGCTTACATACATACATTTTTGGAACTCATAGTACAAGGATAGTTTCCAACGTGGTATGTCCTCAGTCTAGGCTATAAGGATCTTAGCAAATCAACCTTTTTAACAAAGGGAACATTGTGTTACTATTGTAATATGGCTACCTGTCCTAACTCTTCTTTTATTCCTTATGTTGCATAGCCTTGCAACCCTGCCGTGGGAGGGCCTGCAAAGTCTCAACTTGTTCATGAGGTAGATGCCCTTGGTGGTGAAATGGGGAAAATTGCAGACAGGTACATTTAATTGGTTCATTATTTTAGATAGATAGATTTTCTTTTCCCCTACTTTTTGGACTTTTAGTTGGTGTGTAGGTCTGAGAGATGAAACCTGCACCGAAATCCTCAAAGATCTATTGTCATACTGATTACTTCATCTCTTAGGTGCTACCTACAAAAGCGTGTGCTAAACAGCTCAAAAGGCCCTGCTGTACGTGCACTGCGTGCTCAGACTGACAAGAGGGAGTATGCAGTAGAGATGAAGAAAGTTGTTGAAAGGTCAATATGCACTCTCGTCTTTTATCAGAATTTACAAACTATATTCGAATTTGTTTGCCTTTTAGGTAAATCAAAAGACACCAAACTACTCCCTCCTGATTTCTGAATAAGAGCGAGCGTGCTGTGTAAATTCTGAATTGGCTGGAGTTATTCACGCGTTTCAGATATTCTTAAGTTGTACATGGTTATCCACAGAGTCACAAGGCTTGTGTTTTATTAGTTTAACCTATGAAGACAACTTCATTCATTTGACATGTGTTTTGATTGGTCCTGACCAAAGACTATTGACTAGATGTTAATTCTAATTTCTTGAGTAGAGGTGAATCTGTTTCTGCATATCTTTTACCTATAAATTCAACAAATATAGTTGATGTGTTCTTGTGATATCTAGAAATATGTTGTTGTTGAATGCAGGTACTTTAGTGTAATATCTTTCATGTTATTTACTGATTATTGCATATGCTATTTTTCAGCACACAAAATCTTTTCATTAGAGAGGCAATGGCTACAGAGGTTATGATAGGCCAGAACGACAATGTTGAGGGTGTCCGCACTTTCTTCGGCATGGACTTTTATGCACCATCTGTTGTACTTACCACTGGAACATTCATGAGTGGTAAGATTTGGGTAGGTAGGACTTCAATGCCTGCCGGGCGAGCTGGAGAGTCAGCTTCACATGGACTCACTGAAAACTTGCAGCAGTTGGGTTTTGAAACTGACCGCTTAAAAACTGGCACACCACCACGAATTGATCGCAGGACTGTTAACTTTTCTGGATTGGAACCCCAGCATGGTGATGAAGAGGTATGGAACATCTGACAATATGTATGAGTGAAGTTTTTTGTTATTCGTTATATACAAGTGTCATCTTCCACTTGTATCTGAAAATGCAAATTCCGTCATTCTTATATACTTTTGCTTCTCTCTTTCATTTGCCACTTTACATTTCATTGTTAAAGCAACGCCTTTTGTACTCTTATTAGTAAGATCTAGAAGCACTGTGCTTCTGTTGTGACAGTTAATTTGGTTTCTCTCTGATTAGAAGTCAAAATTTCAAAAGCACCCCTTGAATACAGTGTTCGTTTTATGTAATGATTGATCAAAGTTGTGAACCCTTGTGGATAATTGATTCTTTTGCTATCGATCTGGCACAGAAAATAGATTGAATGGACTTTGCACAATTTGAACCTTCTTGTTCAAATATTTCCAAATGTATGTGGTATTTTCTCCGATAGACTTTGAACAACATTTCCTGCACCTGTAGTATCTGCTGCATACTTTGTGCACTTAGTTGCGTTTATGAATCTATGACTTATCAGCTGCTTAAGTTTGCAGTTCAAGTTTGCTTTGACCATATATGTAAATGTTCAAAAGATGGTTTCTCTTTAAACAGGTTGGCTGGTTTAGTTTTGATCCTGAATTCCATATTGAGAGGGACCAAATGTGCTGCTATTTAACAAGGACTACAAAAGAGACACATCAAATTGTTAGAGATAACTTGGATGAAACACCAACTTATGGTGGTTGGGTAGAAGCAAAGGGACCAAGATACTGTCCAGCAATTGAAGACAAGGTATAATTCTACCATCTGAGTTTTTTAGTTTGTTAAATGGCAGATTATTCTATTTTAGTACGTGTAATCAAACTTATTATTGCTAAGGAAGAGGTTGTTCACGTTATGGCACAATCATGAGGATAACCAGACTATCTTTGCTTCAGATTGTAAGGTTCAAAGACAAAGAGTCCCATCAGGTATTTCTTGAACCAGAGGGCAGAGATGTTCCTGAGCTTTATCTGCAGGTCAATCTACATCCAGAACTCCCTCTATCCATTCAACATATTTTATATCATGGTTGTATTTATTAATCATCTATTATGGTTCTCTTGTCCCCTATTTTTTAAAAATAATGCCTTCTGCACTGTTTTGCACTCTCTAGTCATATTTATTAATCATCTATTGTGGTTCTCCAATATTCTATCCCCCATTTTATTGAAAATAATGTCTTCTGCACTGTTGTTTATCCCAATTCCGACCACTCAAGATCATTTGTACATCGTAAGCAGGGGTTTTCCACTGGGCTTCCTGAGCGATTGCAATTATCACTTGTGAGAACACTACCGGGACTGGAGAATTGTGTGATGCTAAGGCCGGCTTATGCTGTTGAATATGATTACTTGCCAGCTTACCAGTGCTCAAGATCACTTATGACCAAGAAGTTTGAGGGCTTATTCTTCTCTGGCCAGATTAACGGAACAACAGGATATGAAGAAGCTGCAGCTCAGGTTAATTTATTTTCTTTGCTGTGTTTATATGGTTGTTCAACAAGTTTTTTTGAATCCTAAGCTTGCTTACTTTTGTTTACAGGGTATAATTTCCGGAATAAATGCAGCTAGGCATTCTGATGGAAAGCCACTTATCATTCTTGAGAGAGAAAGCAGTTATATTGGGACTCTGATTGATGATCTTGTCACAAAAGATCTTAGGGAGCCTTATCGCATGTTAACAAGGTATGTTTTTTTTTCTGTACGAATGCTATTAGTATGATGGTTGTATTTTTCTTTTTTAGAAAATGCAGGAGAGGTGTGTTTCATTTCATTAAGAAGGAAAAAACAAACACCCATACAATCAGGGCTCACAAGCCCTCCACCCAAACACACCCACAAAAACATCACACAAGGTGACGCACGGCCAATGATGGTTGTATTAAGCTGAAGCAATTGGTGATATAACTGTGTATCCTAATTAGTACTAGATTATGTGTTACTCTGAGAAGCTAAGAGTCTGTGGGCGCCAATTTGCCATAGAATAATGGTCATAATTCTCATTAGATAATGTGTAATCAAATGAACTATTTAAATGGAGGGGCCAATGGTAACCTGATTAGAGATGTGTTGCAATAGGATGTTAATTTTTGATACTCTCTTCGGCTAACTATCAGAAACATGCTATGCTTTGTACATTGTGTAATCCATTAGAAACTAGAAACTTAACACATTACTAGTTCAATATGATCAGGGAAAAACAGTCAGCCGGTAAGTGGCTTTACCAGTAGGTACTGGTAGCATTATGATTTCTTGAATCATAACTTTGTTGACCTTTTTTTTTTTGTTGCTACATACATACATTCAGCCGTTCAGAACACCGTCTATTGCTTCGAGCTGATAATGCTGATAGTCGGTTGACTCCTTTGGGACGAGATATTGGTTTGATAGATGATAGACGATGGGAGCTTTATCAATCAAAGCAAGCCCGGATTAAAGAGGAAAAAGAACGATTGAAATCTACAAAAATCCCAGGTAAATTCTATCTTTTTTGAAATGCTTCATGAATTCATGCCAAGTTTTAAAATGCTAGTACCAACATGCACTTGCTCAGTATAGTCACTAGCATGAATTCAGATGCTCTAACTCGGTATTTCCGTTCTCAGGAGGTGAATTTGCTGCTGCGGTTACCTCTGTATCCAACCAACCTGTAAAAGAATCATCTACACTTGAAGCCATACTGAAGAAGCCACATGTACAGTATAAACTTCTTGACAAACATGGATATGGAAATGAACATTTGTCTCGAATTGAGAAAGAATGTGTGGAGATTGATATTAAGTACGAAGGTTTTATAGCACGGCAGCAAAGTCAATTGCAGCAGGTAATTTGCTTTGTGGATCATGTGCATTTGTCCTACTTCCTAAGATGCACTTATAAGGGAGGCTCTTTGAACTGAAAGAAAAAATGTGCATAAACATTTAAGATGTAATTCAATGCATATTGAGGAACTTGTTTAGCTCTTTGGTAGCTGTATTCTGTTGGGCTTCCCAAATTGGGAGCACTAGTTGATTATTTATCAGCTTTTGTGTAGCTGTGTTCTGTTGGGCCTCCTAACTTGAGAGATGTAGTTGATTATTTATATTCAGCAATGTAATATAGAATTCTGATGTTGTTTCATATTCCTTTGTTTAACACCTCTTGTTTTTTCTACCTAGAAGATATGCTGACCCCTCGTTTTATTTTTTTCTCTTCATCAGATTGTAAATCAGGAGCACAAGAAGCTTCCTGAAGACTTAGATTATCATTCAATGACAAACCTGTCACTTGAAGCTCGTGAGAAACTTTCAAAGGTGTGTGATCTTCTTCATGTTAAGAACCTTATATAGCAGATGACCTGTCAACATATATAAATGAAATGCATTATACGGTTCTCTATTTGTTGACACACATGTTATCTACACCTCAGTCATCTGAGATAATTTGTTTTTAAAATGCTTTAGAATTCTCAATATATCAGCTGCTGAAGGTTCTGGTGATCATATCTTGCCTGAAATTGTGTCGTGCACACATTATCTAAGTTTTACAATTTGGCAACTGAATATCATTCATGATCTGTAAGAAATTCAAGCTGCTAGATTTGCATTTAATACAACTAATTTTTTTCACCGTGCAATGCAATTTATATTATGTGGTATGTTTAGGTAAGGCCACAAACAATAGGCCAGGCTAGCAGAATTGGCGGGGTGAGCCCAGCTGATATGACTGTTCTTCTCATTTGGATGGAGAGCAACCGTCGCATGGCTAACTACAAGAGACAGCAAAGCACGTTGAGATCTGCTGCGACCAAGGCAGATGATTCTTCAGACGAAGTGGTTCATGCCAGTGCCACCAATGCATAA</dnaseqindica> 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| External Link(s) |
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