Difference between revisions of "Os03g0118800"
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[[Category:Japonica Chromosome 3]] | [[Category:Japonica Chromosome 3]] | ||
[[Category:Chromosome 3]] | [[Category:Chromosome 3]] | ||
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Revision as of 15:03, 27 October 2012
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Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os03g0118800 |
|---|---|
| Description |
Similar to HMG-CoA synthase |
| Version |
NM_001055309.1 GI:115450346 GeneID:4331418 |
| Length |
4742 bp |
| Definition |
Oryza sativa Japonica Group Os03g0118800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:993672..998413 |
| Sequence Coding Region |
993767..993838,995164..995270,995573..995705,995791..995934,996253..996411 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:993672..998413 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:993672..998413 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcggcggagaggaaggacgtgggcattctcgccatggacatctacttcccgcccacctgcgtgctccaggacgagctggagaatcatgatggcgtgagcaaagggaagtacaccattgggcttggacaggatagcatggccttttgcactgaagtggaagatgttatttccatgagcttgacagtagtgaagtcactcctggaaaactataagattgatccaaaatgtattggacgtttggaagttggcagtgaaacagtaatagacaagagcaagtctataaaaacatggctgatgcaaatatttgaggaatgcggtaatactgacattgaaggagttgactcctcaaatgcatgctacggtggaacagctgctttatttaattgtgttaattgggtcgagagcaactcatgggatggacgttatgggcttgttgtttgcacagacagcgcggtttacgctgaaggtccggctcgtccaaccggtggtgcagctgctattgcaatgttgattggaccaaatgctccagtttctttcgaaagcaagtatagaggatctcatatggcacatgtctatgacttttacaagcctgatcttgctagtgaatacccggtggtcgatggaaagctatcacagacatgctatctcatggcattagattcctgctacaatgtcttctgcaaaaagtatgaaaagcttgagggaaagcaattttctattcatgatgcagactattttgtatttcactccccatacaacaagcttgtgcagaagagctttgcacgcctatactacaacgattttctgagaaaatgcagcacggtggaagatggatcaagagaaaaactggagccttattcaggtttgtcatccgaggaaagctaccagagtagagaacttgaaaaggcttctcagcaagttgcgaagcacctctatgattcaaaggttcaaccaattacattaatcccgaaacaagtcgggaatatgtacacagcgtctctatatgctgctttggcatcagtgatgcataacaaaaatgaaactctggcaggccaaaggattgtcatgttctcatacggcagtggcttgacatcaacaatgttctctttcaagatcaatgaaggccagcatccattcatcctatcaaacattgcaggcatactggatgtctccaagaaactggagtccaggcatgtggttgcgccggagaagttcgtggcggcgctgaagctgatggagcaccggtacggcgccaaggatttcacgacgagccaggacacgagcctgctcgctccaggcacctactacctcacccacgtcgactccatgtacaggaggttctacgccgtcaaaggtcaagccgtcaccgaagtgtccaatggccattga</cdnaseq> |
| Protein Sequence |
<aaseq>MAAERKDVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQ DSMAFCTEVEDVISMSLTVVKSLLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQI FEECGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPAR PTGGAAAIAMLIGPNAPVSFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLM ALDSCYNVFCKKYEKLEGKQFSIHDADYFVFHSPYNKLVQKSFARLYYNDFLRKCSTV EDGSREKLEPYSGLSSEESYQSRELEKASQQVAKHLYDSKVQPITLIPKQVGNMYTAS LYAALASVMHNKNETLAGQRIVMFSYGSGLTSTMFSFKINEGQHPFILSNIAGILDVS KKLESRHVVAPEKFVAALKLMEHRYGAKDFTTSQDTSLLAPGTYYLTHVDSMYRRFYA VKGQAVTEVSNGH</aaseq> |
| Gene Sequence |
<dnaseqindica>96..167#1493..1599#1902..2034#2120..2263#2582..2740#2858..2931#3017..3092#3469..3524#3644..3731#3817..3957#4050..4199#4313..4504#gtaggtactcgtactactccaattctttctctcgcctacgccttcctcccaatcttgttgtttcggcggcggcggcggcggcggcggtgagggagatggcggcggagaggaaggacgtgggcattctcgccatggacatctacttcccgcccacctgcgtgctccaggtcagccaccaatcgatctcatctcccgattcttccctactgatcaacctcgtcgatcgtatcatatttctcccactacaatccgtgtttttcttttacaaatttagtcccatgttttcaacttttcataacttgcaaacacgagtgcaatcaaaacaagatttggaggaagaggaatccttcaaatatttttagaagaaaacatgagcgtattgagaattgaacacattatctcgagttaaaaccacacacctcttatcactcaaacagagtgcaatcgcaatctagtcagatcttttgcctttggataaccctttccgttttctcgtttgttcgggagatcgagtaaaaaaacacacacaccctttgcgtgactttctctgcgtaactgtggtggaatcacggttggtgagaggtttactttactaccggtttccggtgaagattttccagctttccacccccttcttcgccagcatcgcagcggggagaaccagccacgtgcgcctgggccacctccgcgcattcggtgaactggagcagagagcaaagaagagttcagagttgcgattccaagtttactccatggctggactatccgtgaaaaaaaaaaagaaagaagcaactaaaaaataatttaccagtaaaacttttataactttggtctcagtggtttaaaagccaatgctaaaatatcaaatataaaccgcgatggaaaaaaatatatatcaaaatcaactttaaaattaagtcagcaaatatatgattgctgtagtgagtactaatcgtgctactcgttgtagcttacgttaccatttaggagtatagtacaggggagattaaagctgccgttttcagggaggcgtgattaattgctgaccgcttacgtgtggaatgtttgcacctgcttctgcttgagttgagagaaattaattaaaatgctgttccgcgggagaatttgctgtggaagatgccaattgaaacagcttggcacagaatcagtagggccttgactcgtttaagattgtgttgacaatcgatcaaatcactagaactagatggtgatggcttccaagacatggcggcttactatgcacatgtgtacattgaattgggtgctgataaaatggtttatgttcttctgccgacgaccgggatatgtcgggaccttttctttatggtagtagttctgtcagtgatataacttgtacagagtggttgtgtgttggcaatatctcaatgctgtacatcatgtcgatattaataatctttatttcgtgtttcacctagtattagactgcaaatgcatgtgatgtttgctacaggacgagctggagaatcatgatggcgtgagcaaagggaagtacaccattgggcttggacaggatagcatggccttttgcactgaagtggaagatgttatttccatgaggtatgcctgttcctatgtagaaaagcaccattggtgtggtagagttgtgtgtcctaccaggctcaaatcctattcctatgcattttcagagaacatgtgcaacatagtatttgtgattctgaagacaaatgtgaccctcaagtgtcctatccgtgccctataaagtcaaacagtgataaactatgctagatccttagccaaggattttatgttgaaattttaatttcaggaataaagacattaatctccattattcatttatcccttttttatgcatttaattgatcgagagtttaacgcagcttgacagtagtgaagtcactcctggaaaactataagattgatccaaaatgtattggacgtttggaagttggcagtgaaacagtaatagacaagagcaagtctataaaaacatggctgatgcaaatatttgaggtttggacctttcagcagaacataggagtacatattatggtttatgtgctttcataaggcttatgacaactttgtttaaatgcaggaatgcggtaatactgacattgaaggagttgactcctcaaatgcatgctacggtggaacagctgctttatttaattgtgttaattgggtcgagagcaactcatgggatggacgttatgggcttgttgtttgcacagacagcgcggtatgtacaactccagtgttaattgggaatacttttcctttcatgtactcaatttcgtactgtacagattaccagtgtacaactccatttcttttcctgggttactgatgatggctatatgagtacatgtattcatatatatcacgtccttgtttttctcattttttttcttagtttctgttattgaccaccaccacaaatccacaagtgtttttccttaagtactgaaggcaagcataatataggtttgctactatggttctcatgcttacattttgcatccaatattaattctatagctgacatttgtctctttaggtttacgctgaaggtccggctcgtccaaccggtggtgcagctgctattgcaatgttgattggaccaaatgctccagtttctttcgaaagcaagtatagaggatctcatatggcacatgtctatgacttttacaagcctgatcttgctagtgaatacccggtctgcctctggcccacacaattcttacacctcaaacccaagttcggattagcacatagagaactagcttgaaataaactggaattgatttatttatggcatctgcaatttgttcaggtggtcgatggaaagctatcacagacatgctatctcatggcattagattcctgctacaatgtcttctgcaaaaagtaagctgtattccatattgctttaacacattagtcaagctgagcctgttgattgaatcagaacccactggttttcatctttcaggtatgaaaagcttgagggaaagcaattttctattcatgatgcagactattttgtatttcactccccatacaacaaggtaccataaaaatctcatatcatgtaccttagtagcatcttggtggtatagtggattacagccacaattgtgcagacacttgatattcacacttatttaaggcatcttattcactgaaagaaatagggcatcttatttaaaaaacttttcaaataaatagaactcgaggttcccgacatgagtagtgagtagaatatatgcatatttagactgattcttgattgcatactgtcacatgacatggatatgctgatcttaccagtctgcacttcgatcttggttaggagtcgcatgctcgcataacttaccttgcccttttgatatgttgatgtaattttcagaacttatttttttcctttttcattgttttctgcagcttgtgcagaagagctttgcacgcctatactacaacgattttctgagaaaatgcaggttggtcggtcatgcttagcatattaggatataggaagacagttgactggagtaatattgttcagtttttagtagttaactagaactaactataacgattttttatgcctgttaattagcacggtggaagatggatcaagagaaaaactggagccttattcaggtttgtcatccgaggaaagctaccagagtagagaacttgaaaaggtgcgaatatttctgcttggtcataccatctggttctggacttttaataagctgcgtggttctgatactaactttcaatatgcaggcttctcagcaagttgcgaagcacctctatgattcaaaggttcaaccaattacattaatcccgaaacaagtcgggaatatgtacacagcgtctctatatgctgctttggcatcagtgatgcataacaaaaatgaaactctggtaaaaaaggaaaagaacacttagccttgtcttcattatattttcatgtgataagattaccacttctcaccctccccttttgacatgtccaggcaggccaaaggattgtcatgttctcatacggcagtggcttgacatcaacaatgttctctttcaagatcaatgaaggccagcatccattcatcctatcaaacattgcaggcatactggatgtctccaagaaactggagtccaggcatgtggtaagtgcagctgctgaccactgcttcatcttgttgactgaaaacctgaaactagtagcttgacatgaacggatgaacctgaattcctgatcaacaaatgctttgggccgcaggttgcgccggagaagttcgtggcggcgctgaagctgatggagcaccggtacggcgccaaggatttcacgacgagccaggacacgagcctgctcgctccaggcacctactacctcacccacgtcgactccatgtacaggaggttctacgccgtcaaaggtcaagccgtcaccgaagtgtccaatggccattgaaaaaattgtgttgtgatgtgtggttcattcaacctgaagctgcaataagccaacggcatagagggttcagggcgtgggtgtaccaagttttctgatgaaagcttgtaaagggtgctaggttagagctgttggattagttggttcgctattcgctagtaaggcttacttggtgaaatggtatctccacttcgttaatgttcttcagtggaacacacggtagcgagctgtaagaattctt</dnaseqindica> |
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