Difference between revisions of "Os07g0257200"
(→Annotated Information) |
(→Function) |
||
| Line 3: | Line 3: | ||
[[File:NRAMP5_1.jpg|right|thumb|300px|'''Figure 1.''' ''Wild-type lines VS. NRAMP5 knock-out lines (from reference<ref name="ref2" />).'']] | [[File:NRAMP5_1.jpg|right|thumb|300px|'''Figure 1.''' ''Wild-type lines VS. NRAMP5 knock-out lines (from reference<ref name="ref2" />).'']] | ||
===Function=== | ===Function=== | ||
| − | + | * The plant ''Natural resistance associated macrophage protein (NRAMP)'' gene family play an important role in the transportation of metal ions and maintaining their intracellular homeostasis<ref name="ref4" />. As a member of rice NRAMP gene family, ''OsNRAMP5'' is a major transporter responsible for Mn uptake in the roots. <br> | |
===Expression=== | ===Expression=== | ||
Revision as of 08:40, 13 August 2013
The rice Os07g0257200 was reported as OsNRAMP5 three times by Japanese researchers in 2012[1][2][3].
Contents
Annotated Information
Function
- The plant Natural resistance associated macrophage protein (NRAMP) gene family play an important role in the transportation of metal ions and maintaining their intracellular homeostasis[4]. As a member of rice NRAMP gene family, OsNRAMP5 is a major transporter responsible for Mn uptake in the roots.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os07g0257200 |
|---|---|
| Description |
Similar to OsNramp1 (Integral membrane protein) |
| Version |
NM_001065847.1 GI:115471426 GeneID:4342859 |
| Length |
7263 bp |
| Definition |
Oryza sativa Japonica Group Os07g0257200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 7:8903800..8911062 |
| Sequence Coding Region |
8904093..8904425,8905435..8905530,8906126..8906257,8907244..8907348,8907630..8907803 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008400:8903800..8911062 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008400:8903800..8911062 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggagattgagagagagagcagtgagagagggagcatcagctggagagctagtgcggcacatgatcaagatgccaagaagctcgacgcagatgatcagctgctaatgaaggagcctgcatggaaaaggttccttgcccatgttggtcctggattcatggtgtctttagcctacttggatcctggcaatttggaaaccgatctgcaagccggagccaaccacagatatgagctgctctgggtgattctgattggactcatcttcgcacttatcatacagtcgctagcagctaatcttggagtggttacagggaggcatctggctgagatctgcaagagtgagtaccccaagttcgtcaagattttcctatggctgctggcagagttggccgtcatcgctgcagatatcccagaagttatagggacggcctttgctttcaacatattgttccatattccggtgtgggtcggcgtcctcatcaccggcaccagcactctactgcttcttggcctccaaaaatacggggtgaggaagctggagtttctgatatcgatgctggtgttcgtgatggcggcgtgcttcttcggggagctgagcatcgtgaagccgccggcgaaggaggtgatgaaggggctcttcatccccaggctcaacggcgacggcgccaccgccgacgccattgccctcctcggagctcttgtcatgccccacaatctgttcttgcattctgccttggtgctatcgaggaagacaccggcatcagtcagaggaatcaaggacgggtgcaggttcttcctgtacgagagcgggttcgcgctgttcgtggcgctgctgataaacatcgccgtcgtctccgtctccggcaccgcctgctcctccgccaacctctcccaagaggacgccgacaagtgcgccaacctcagcctcgacacctcctccttccttctcaagaacgtgctgggcaagtcgagtgcgatcgtgtacggcgtggcactgttggcatctgggcagagctccactattaccggcacatacgctggacagtacatcatgcagggtttcttggacatcaggatgaggaagtggcttcggaacctgatgacaagaaccatcgccatcgcgccgagcctcatcgtctccatcatcggcggctccaggggcgccggccgcctcatcatcatcgcttcgatgatactgtccttcgagctgccgtttgctctcatccctcttctcaagttcagcagcagtaagagcaagatggggccccacaagaactctatctatataatagtgttctcgtggttcctgggtctgctcatcatcggcatcaacatgtacttcctgagcacgagcttcgtcggctggctcatccacaacgacctccccaagtacgccaacgtgctcgtcggcgccgccgtcttcccgttcatgctcgtctacatcgtcgccgtcgtctacctcaccatcaggaaggactccgtcgtcaccttcgtcgccgactcctccctcgccgccgtcgtcgacgccgagaaggccgacgccggcgacctcgccgtcgacgacgacgagcccttgccgtaccgcgacgacctggccgacatcccgctcccaaggtag</cdnaseq> |
| Protein Sequence |
<aaseq>MEIERESSERGSISWRASAAHDQDAKKLDADDQLLMKEPAWKRF LAHVGPGFMVSLAYLDPGNLETDLQAGANHRYELLWVILIGLIFALIIQSLAANLGVV TGRHLAEICKSEYPKFVKIFLWLLAELAVIAADIPEVIGTAFAFNILFHIPVWVGVLI TGTSTLLLLGLQKYGVRKLEFLISMLVFVMAACFFGELSIVKPPAKEVMKGLFIPRLN GDGATADAIALLGALVMPHNLFLHSALVLSRKTPASVRGIKDGCRFFLYESGFALFVA LLINIAVVSVSGTACSSANLSQEDADKCANLSLDTSSFLLKNVLGKSSAIVYGVALLA SGQSSTITGTYAGQYIMQGFLDIRMRKWLRNLMTRTIAIAPSLIVSIIGGSRGAGRLI IIASMILSFELPFALIPLLKFSSSKSKMGPHKNSIYIIVFSWFLGLLIIGINMYFLST SFVGWLIHNDLPKYANVLVGAAVFPFMLVYIVAVVYLTIRKDSVVTFVADSSLAAVVD AEKADAGDLAVDDDEPLPYRDDLADIPLPR</aaseq> |
| Gene Sequence |
<dnaseqindica>6638..6970#5533..5628#4806..4937#3715..3819#3260..3433#2900..2969#2619..2800#2285..2394#1181..1285#1020..1098#681..721#474..552#97..207#gtcactaccaccattctcttcttcgtctacttccagctagcctgagctctagcttagctctagcttagcctgaagaagctaagagaggaagcaacaatggagattgagagagagagcagtgagagagggagcatcagctggagagctagtgcggcacatgatcaagatgccaagaagctcgacgcagatgatcagctgctaatgaaggtcagttgctaccttaattatcacaaagttgtcttcttgtaagcactccactgtcaccatggacagttgttcactgtaactgcagaagcaagagcagagcttaatgtagatagatcttgagagtacttcctggcatggcattcattgctcatgaatgttcatgtgtgtgtgtgtatgtggtaattaaggactgatggaacattggatcctcaattatgtctgtgtttctttttgttagtttctcagttttggtaaattgtgtacaggagcctgcatggaaaaggttccttgcccatgttggtcctggattcatggtgtctttagcctacttggatcctggcaattgtgagaatctctctctctctctctctctctctctctctctctctctctctctctctctctctcaactgaaacttttattttgacaaactctggattgtaactgttaattttgtcacaaaatgaaacagtggaaaccgatctgcaagccggagccaaccacagatatgaggtacgtacagtcgactttattttactgtttacgcactgaatgactgaaagcatgagtaactttcatgctttctaggtgttcgtccctttccttgtccctcgcagactcacactccattaattcatctgctagctccatcaaattctccaaattgacaaacttttcagaaccacttttaatccccagtgcatatgtatctcactctcacatcatctagagaaaagagaaaagtgaataatctgcaccattaattgatttctatgtgcttttctgtccattgtgttgtttcaatttgcagctgctctgggtgattctgattggactcatcttcgcacttatcatacagtcgctagcagctaatcttggagtggttacaggtgactaaatgacacgcaattaaactgtaattaccaacttgataaagtgctaatatatggccggcattaatttacatcctagggaggcatctggctgagatctgcaagagtgagtaccccaagttcgtcaagattttcctatggctgctggcagagttggccgtcatcgctgcagatatcccagaaggtatatacttattagtaacaacttgacacggtccagcctgaataattaatttattaaactacttgtgtttaacagtgtcaccatctttgactttgagctaattaattaattcagtttaagctctctgacagtagaagaaaacaagttgatctggctagcatatgtagctccaaccgtacgggcctacatactggaattcctaatccacaaacataggcaaattaatatctcaccaatcaccatcaagccacgttcttctcagctactcaccagattattctcacatattatttctttcatgtctctagctagtaaatatgtttttctaaaaaaaatatattctgcgatattgcatagaatacaagttctaagccattttttaaaaaaatatttaattcatccatataataaggtagataatatgtaccaataatatatctgttgaataatctgtttcaaacataagcaaatgcgcgttttagctgtttagaggagtgaccacgtccacagtagcttcccataaaagtgtcaatgatgcacatcaagattagattttaaacactgggtgagtacgttcatcatcttacgcagattagtaaacaactattttgtcaccctcttgtcatttcacatttgtcctgtcctgtatacatccatgtgtgtttaaacaataacaacaatatctaaatatctatctatctagcaacatggaagagagatcagtggtgtagcagttgcaaaacggagctgcgcgaagctttgctgatcgggattagttaacctcaaccgttgtaaattgcctttttaattgatcatgcatgcaagttcttttttaaaaaaattaaactagttatggaagatacctcacatgatgatagcaaaggtgatatatagatagatagatagatcgatcaacagatagaaaggtacagatcgatgtgattataattaattaattaattacatgtcgtttgatgttgttaattttggtggatgcagttatagggacggcctttgctttcaacatattgttccatattccggtgtgggtcggcgtcctcatcaccggcaccagcactctactgcttcttggcctccaaaaatacggggtataaattattttttgtaagttgtttttgtttagtatcacaagcattagcgtaggatgcactcaaagaaacgattataaaaatggaatagtatatgaaattagctagttggatcgattgtcaagtactcaaatggcatattatatgtacattattcagttttttttctctgactgtggaactgcatgaaaattgattgatgaattttttttgaaaaaaaacaggtgaggaagctggagtttctgatatcgatgctggtgttcgtgatggcggcgtgcttcttcggggagctgagcatcgtgaagccgccggcgaaggaggtgatgaaggggctcttcatccccaggctcaacggcgacggcgccaccgccgacgccattgccctcctcggagctcttgtcatgccgtacgcttttacatacatacatacatacgcaacaatcaatcaattaattcatacaactaatcagttaattaactactgcatgcatttatatatatgcagccacaatctgttcttgcattctgccttggtgctatcgaggaagacaccggcatcagtcagaggaatcaaggtagctatattcagcctgggcagatcgagataggtatagggtagctaggacatgaactcgatctagtcctgtctcttaaatcttgtttaaattttattaaattaacatgtaaatttcatagaaaaccaatactttattagctaagttttattttagcactaatcttctataatttcgggctccagtaccactggattcagcttagaattttttcatgcatggaaagaaaccgaacaaagatccaggctaataattaatatgtactatatggtgtgtgaattgccacgtaggacgggtgcaggttcttcctgtacgagagcgggttcgcgctgttcgtggcgctgctgataaacatcgccgtcgtctccgtctccggcaccgcctgctcctccgccaacctctcccaagaggacgccgacaagtgcgccaacctcagcctcgacacctcctccttccttctcaaggtcattcattcattattacttcctactccttaatattaaaaatttttaaatggattagacgtatcctagtactacagatagaaatctattcagattcgtagtactagcttgtatgtgttcaatttaatcaatatttaattaaccacaataataccgaattagtctacacgatttctccgtcctaaaatataataactttattagatatgtttatatttttgaataggaggagtaactaatttatggtcaaattgtgacgtcaatttttttatgtggttcagaacgtgctgggcaagtcgagtgcgatcgtgtacggcgtggcactgttggcatctgggcagagctccactattaccggcacatacgctggacagtacatcatgcaggtaattaattaaattaattaacttaactgtacctgtacctgtacatcaccagctagcttagcgcgtaattaaatgattgaactataattaattaaacggctagctgccacataattaatttgttaatccgttcaattatggaggttaactgacgaattgtaggggtgcacacctaatcctgtttacatcacgaatatttagtgatataatattcctttattaattaggtaatctggcgatcctcgtcggatttcaccatatgtttttgttaaagtcagatcgaattaagacgctaccttgctgccactacttaccactttcgtccatatttctccgctcttttggtctagtccatttcacggtgcagtctcatcaataaccagcgattttactgtttacatatacttagaaaaccaattgattaataaaaatatgctaacgaaactctataaattatattaaaaaaaataggatatcccatcgcaccgtaaaattttctttctgaagtgaacgttgagaaagagaacaactagttttcctaatctacctggcgggctaaccgatctagttcgagtctcattcctcttaataatctatttatgatatgaagcgtatttcagttacgggataaatcggacccgaaaatatatatttattttttcactccaaaggactgatcttcaggatatactcactccgtctctaaatatttgacgtcgttgactttttataaatatgtttgaccgttcgtcttatgcaaaaacttttatgaatattatttaaaaaactagagtagtagtagtatatacaacaatgaatcaaatgataagaaaagaattaataactacttaaatttattgaataagatgaatggttaaacatgtttagaaaaatcaacggcgtcaaatatttaatgacggaaggagtatatgataaatcatcatcatgtcgcgttgatatatatgatatgatccatgtatgtgcagggtttcttggacatcaggatgaggaagtggcttcggaacctgatgacaagaaccatcgccatcgcgccgagcctcatcgtctccatcatcggcggctccaggggcgccggccgcctcatcatcatcgcttcggtcagcatttttattattactatttactatagcaaatctttactattattactattttactatagcaaactgcgtgcgccatacggcggcgcccgccggcgagcaaccggccggccgtcgtgtcgccgatcgattaaaatttaatgcgtttaaatttttaattttgcacatgcccaaacagtcacgtgtgtgcagtcgatcgtgcggatttatgtagctagctaggtagtagtggggtatccactaggtacctagtgacatagtactaagagcatatatatatgtcattagagcaaaagcactttttcttctttttttagattattgccaaatcaaagtagtgatctgattagcaaaatgtcactgactagctaggtatcttttctttttttgcaatctgatctaaaatagcaccatgcatatatataatacagtgtaccatctagctagactagcttccaactcaataagtaaggactaattatatataattaaatcaaatcaaagtagtgatctgatcattgctagttcttgtttgcttaattacatatatatgattaattgttcctaatccgtacgtgttgtgtgcatgcagatgatactgtccttcgagctgccgtttgctctcatccctcttctcaagttcagcagcagtaagagcaagatggggccccacaagaactctatctatgtaagatcgtacactatatatatgcattgcttaattatagtttgtttcttaatctcaattggcagcaaatgtacaagtaacataaatatatgcatctatctgtccatgcatgaaattagagtttcaataattgttggtaaagaatataaattaatgatgatagttggctagctagctggtccttcaccctgcatgcatgcaacccctacaggacaccatgttctataggtcagtgtgtgcataatatagatcgagatgtgcagtgaattgaattgaatcattagctacctagctcatgcaatagtattatagcacagcaggggccaatgcaggacaggtatatatatggtccagccatgcatatagaggatcgtcgtacatatgaaaacgacgaccaagatgtacgtcctgcatcatttttctgtcttgcagtagtaccagagattaatcatgtattgcgtcgtcggcatgatgtgtcaaaatcatgcagtaacgtacttgcttgatctttacagacatcgaagagccaagttcttcagtacactatatatattttttcttgcatggaagtaaaatgtaaatataatttaacatagatcattacgtatgtcgttgtatctctacttaaacatttctagacacatacaagtcaacattagaaaatgtaattcttttttaaggaccataaataaactgatctacaacaaaattgaacaaatgtaaatttatttcttattattacacacatggctatatatatatatatatatgtgtgtgtatatatatatatatgtgtatatatatatatgtgtatatatatatatatatatatatgtatatatatatatatatactacctataaaaattgcgcatgctcatcagtcgatacccgttaaaaagatatataagttaccacccgtcaaagatgactggttatttagtgacgctatcaatgaattaattagcgtcatgtatgtcaaaaaataaattgaattgaattgaatgcagataatagtgttctcgtggttcctgggtctgctcatcatcggcatcaacatgtacttcctgagcacgagcttcgtcggctggctcatccacaacgacctccccaagtacgccaacgtgctcgtcggcgccgccgtcttcccgttcatgctcgtctacatcgtcgccgtcgtctacctcaccatcaggaaggactccgtcgtcaccttcgtcgccgactcctccctcgccgccgtcgtcgacgccgagaaggccgacgccggcgacctcgccgtcgacgacgacgagcccttgccgtaccgcgacgacctggccgacatcccgctcccaaggtagagaagaagaagatcgacatgcatacgtatggtatagcgtatgtatacgtacgtatatacgcgtacattgtgaatatacgtacttacgtacgtatatgtgcatcctctatggatgccacgtgcgtgcgtcggagccgttcgtttatatttgtgcggtccagatcgctcgcagatcgatcgatcgacaagggtgtgcaattaatatataagcatttgaggggaggtggctcatgtatccttgtaatttatatgtacgatatgatttatcataattcagggcagagccaacgtcct</dnaseqindica> |
| External Link(s) |
- ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref1 - ↑ 2.0 2.1 Cite error: Invalid
<ref>tag; no text was provided for refs namedref2 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref3 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref4
