Difference between revisions of "Os07g0257200"

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* It can participate in the major route for Cd entering the root cells from the external environment in rice<ref name="ref1" /><ref name="ref2" />. The research by ''Yasuhiro Ishimaru'' also pointed out that ''OsNRAMP5'' would function as a Fe and Mn transporter during flowering and seed development<ref name="ref3" />.
 
* It can participate in the major route for Cd entering the root cells from the external environment in rice<ref name="ref1" /><ref name="ref2" />. The research by ''Yasuhiro Ishimaru'' also pointed out that ''OsNRAMP5'' would function as a Fe and Mn transporter during flowering and seed development<ref name="ref3" />.
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===Wild Type & Mutations===
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* The ''Nramp5'' Knockout Line reported by ''Akimasa Sasaki'' in 2012 showed that the growth of both the mutant shoots and roots was less than that of wild-type rice without any heavy metal ions treatments<ref name="ref2" />. And severe chlorotic symptoms could be found in the leaves of the ''Nramp5'' knockout line. <br>
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===Expression===
 
===Expression===
 
Please input expression information here.
 
Please input expression information here.

Revision as of 08:42, 13 August 2013

The rice Os07g0257200 was reported as OsNRAMP5 three times by Japanese researchers in 2012[1][2][3].

Annotated Information

Figure 1. Wild-type lines VS. NRAMP5 knock-out lines (from reference[2]).

Function

  • The plant Natural resistance associated macrophage protein (NRAMP) gene family play an important role in the transportation of metal ions and maintaining their intracellular homeostasis[4]. As a member of rice NRAMP gene family, OsNRAMP5 is a major transporter responsible for Mn uptake in the roots.
  • It can participate in the major route for Cd entering the root cells from the external environment in rice[1][2]. The research by Yasuhiro Ishimaru also pointed out that OsNRAMP5 would function as a Fe and Mn transporter during flowering and seed development[3].

Wild Type & Mutations

  • The Nramp5 Knockout Line reported by Akimasa Sasaki in 2012 showed that the growth of both the mutant shoots and roots was less than that of wild-type rice without any heavy metal ions treatments[2]. And severe chlorotic symptoms could be found in the leaves of the Nramp5 knockout line.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0257200

Description

Similar to OsNramp1 (Integral membrane protein)

Version

NM_001065847.1 GI:115471426 GeneID:4342859

Length

7263 bp

Definition

Oryza sativa Japonica Group Os07g0257200, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:8903800..8911062

Sequence Coding Region

8904093..8904425,8905435..8905530,8906126..8906257,8907244..8907348,8907630..8907803
,8908094..8908163,8908263..8908444,8908669..8908778,8909778..8909882
,8909965..8910043,8910342..8910382,8910511..8910589,8910856..8910966

Expression

GEO Profiles:Os07g0257200

Genome Context

<gbrowseImage1> name=NC_008400:8903800..8911062 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:8903800..8911062 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagattgagagagagagcagtgagagagggagcatcagctggagagctagtgcggcacatgatcaagatgccaagaagctcgacgcagatgatcagctgctaatgaaggagcctgcatggaaaaggttccttgcccatgttggtcctggattcatggtgtctttagcctacttggatcctggcaatttggaaaccgatctgcaagccggagccaaccacagatatgagctgctctgggtgattctgattggactcatcttcgcacttatcatacagtcgctagcagctaatcttggagtggttacagggaggcatctggctgagatctgcaagagtgagtaccccaagttcgtcaagattttcctatggctgctggcagagttggccgtcatcgctgcagatatcccagaagttatagggacggcctttgctttcaacatattgttccatattccggtgtgggtcggcgtcctcatcaccggcaccagcactctactgcttcttggcctccaaaaatacggggtgaggaagctggagtttctgatatcgatgctggtgttcgtgatggcggcgtgcttcttcggggagctgagcatcgtgaagccgccggcgaaggaggtgatgaaggggctcttcatccccaggctcaacggcgacggcgccaccgccgacgccattgccctcctcggagctcttgtcatgccccacaatctgttcttgcattctgccttggtgctatcgaggaagacaccggcatcagtcagaggaatcaaggacgggtgcaggttcttcctgtacgagagcgggttcgcgctgttcgtggcgctgctgataaacatcgccgtcgtctccgtctccggcaccgcctgctcctccgccaacctctcccaagaggacgccgacaagtgcgccaacctcagcctcgacacctcctccttccttctcaagaacgtgctgggcaagtcgagtgcgatcgtgtacggcgtggcactgttggcatctgggcagagctccactattaccggcacatacgctggacagtacatcatgcagggtttcttggacatcaggatgaggaagtggcttcggaacctgatgacaagaaccatcgccatcgcgccgagcctcatcgtctccatcatcggcggctccaggggcgccggccgcctcatcatcatcgcttcgatgatactgtccttcgagctgccgtttgctctcatccctcttctcaagttcagcagcagtaagagcaagatggggccccacaagaactctatctatataatagtgttctcgtggttcctgggtctgctcatcatcggcatcaacatgtacttcctgagcacgagcttcgtcggctggctcatccacaacgacctccccaagtacgccaacgtgctcgtcggcgccgccgtcttcccgttcatgctcgtctacatcgtcgccgtcgtctacctcaccatcaggaaggactccgtcgtcaccttcgtcgccgactcctccctcgccgccgtcgtcgacgccgagaaggccgacgccggcgacctcgccgtcgacgacgacgagcccttgccgtaccgcgacgacctggccgacatcccgctcccaaggtag</cdnaseq>

Protein Sequence

<aaseq>MEIERESSERGSISWRASAAHDQDAKKLDADDQLLMKEPAWKRF LAHVGPGFMVSLAYLDPGNLETDLQAGANHRYELLWVILIGLIFALIIQSLAANLGVV TGRHLAEICKSEYPKFVKIFLWLLAELAVIAADIPEVIGTAFAFNILFHIPVWVGVLI TGTSTLLLLGLQKYGVRKLEFLISMLVFVMAACFFGELSIVKPPAKEVMKGLFIPRLN GDGATADAIALLGALVMPHNLFLHSALVLSRKTPASVRGIKDGCRFFLYESGFALFVA LLINIAVVSVSGTACSSANLSQEDADKCANLSLDTSSFLLKNVLGKSSAIVYGVALLA SGQSSTITGTYAGQYIMQGFLDIRMRKWLRNLMTRTIAIAPSLIVSIIGGSRGAGRLI IIASMILSFELPFALIPLLKFSSSKSKMGPHKNSIYIIVFSWFLGLLIIGINMYFLST SFVGWLIHNDLPKYANVLVGAAVFPFMLVYIVAVVYLTIRKDSVVTFVADSSLAAVVD AEKADAGDLAVDDDEPLPYRDDLADIPLPR</aaseq>

Gene Sequence

<dnaseqindica>6638..6970#5533..5628#4806..4937#3715..3819#3260..3433#2900..2969#2619..2800#2285..2394#1181..1285#1020..1098#681..721#474..552#97..207#gtcactaccaccattctcttcttcgtctacttccagctagcctgagctctagcttagctctagcttagcctgaagaagctaagagaggaagcaacaatggagattgagagagagagcagtgagagagggagcatcagctggagagctagtgcggcacatgatcaagatgccaagaagctcgacgcagatgatcagctgctaatgaaggtcagttgctaccttaattatcacaaagttgtcttcttgtaagcactccactgtcaccatggacagttgttcactgtaactgcagaagcaagagcagagcttaatgtagatagatcttgagagtacttcctggcatggcattcattgctcatgaatgttcatgtgtgtgtgtgtatgtggtaattaaggactgatggaacattggatcctcaattatgtctgtgtttctttttgttagtttctcagttttggtaaattgtgtacaggagcctgcatggaaaaggttccttgcccatgttggtcctggattcatggtgtctttagcctacttggatcctggcaattgtgagaatctctctctctctctctctctctctctctctctctctctctctctctctctctctcaactgaaacttttattttgacaaactctggattgtaactgttaattttgtcacaaaatgaaacagtggaaaccgatctgcaagccggagccaaccacagatatgaggtacgtacagtcgactttattttactgtttacgcactgaatgactgaaagcatgagtaactttcatgctttctaggtgttcgtccctttccttgtccctcgcagactcacactccattaattcatctgctagctccatcaaattctccaaattgacaaacttttcagaaccacttttaatccccagtgcatatgtatctcactctcacatcatctagagaaaagagaaaagtgaataatctgcaccattaattgatttctatgtgcttttctgtccattgtgttgtttcaatttgcagctgctctgggtgattctgattggactcatcttcgcacttatcatacagtcgctagcagctaatcttggagtggttacaggtgactaaatgacacgcaattaaactgtaattaccaacttgataaagtgctaatatatggccggcattaatttacatcctagggaggcatctggctgagatctgcaagagtgagtaccccaagttcgtcaagattttcctatggctgctggcagagttggccgtcatcgctgcagatatcccagaaggtatatacttattagtaacaacttgacacggtccagcctgaataattaatttattaaactacttgtgtttaacagtgtcaccatctttgactttgagctaattaattaattcagtttaagctctctgacagtagaagaaaacaagttgatctggctagcatatgtagctccaaccgtacgggcctacatactggaattcctaatccacaaacataggcaaattaatatctcaccaatcaccatcaagccacgttcttctcagctactcaccagattattctcacatattatttctttcatgtctctagctagtaaatatgtttttctaaaaaaaatatattctgcgatattgcatagaatacaagttctaagccattttttaaaaaaatatttaattcatccatataataaggtagataatatgtaccaataatatatctgttgaataatctgtttcaaacataagcaaatgcgcgttttagctgtttagaggagtgaccacgtccacagtagcttcccataaaagtgtcaatgatgcacatcaagattagattttaaacactgggtgagtacgttcatcatcttacgcagattagtaaacaactattttgtcaccctcttgtcatttcacatttgtcctgtcctgtatacatccatgtgtgtttaaacaataacaacaatatctaaatatctatctatctagcaacatggaagagagatcagtggtgtagcagttgcaaaacggagctgcgcgaagctttgctgatcgggattagttaacctcaaccgttgtaaattgcctttttaattgatcatgcatgcaagttcttttttaaaaaaattaaactagttatggaagatacctcacatgatgatagcaaaggtgatatatagatagatagatagatcgatcaacagatagaaaggtacagatcgatgtgattataattaattaattaattacatgtcgtttgatgttgttaattttggtggatgcagttatagggacggcctttgctttcaacatattgttccatattccggtgtgggtcggcgtcctcatcaccggcaccagcactctactgcttcttggcctccaaaaatacggggtataaattattttttgtaagttgtttttgtttagtatcacaagcattagcgtaggatgcactcaaagaaacgattataaaaatggaatagtatatgaaattagctagttggatcgattgtcaagtactcaaatggcatattatatgtacattattcagttttttttctctgactgtggaactgcatgaaaattgattgatgaattttttttgaaaaaaaacaggtgaggaagctggagtttctgatatcgatgctggtgttcgtgatggcggcgtgcttcttcggggagctgagcatcgtgaagccgccggcgaaggaggtgatgaaggggctcttcatccccaggctcaacggcgacggcgccaccgccgacgccattgccctcctcggagctcttgtcatgccgtacgcttttacatacatacatacatacgcaacaatcaatcaattaattcatacaactaatcagttaattaactactgcatgcatttatatatatgcagccacaatctgttcttgcattctgccttggtgctatcgaggaagacaccggcatcagtcagaggaatcaaggtagctatattcagcctgggcagatcgagataggtatagggtagctaggacatgaactcgatctagtcctgtctcttaaatcttgtttaaattttattaaattaacatgtaaatttcatagaaaaccaatactttattagctaagttttattttagcactaatcttctataatttcgggctccagtaccactggattcagcttagaattttttcatgcatggaaagaaaccgaacaaagatccaggctaataattaatatgtactatatggtgtgtgaattgccacgtaggacgggtgcaggttcttcctgtacgagagcgggttcgcgctgttcgtggcgctgctgataaacatcgccgtcgtctccgtctccggcaccgcctgctcctccgccaacctctcccaagaggacgccgacaagtgcgccaacctcagcctcgacacctcctccttccttctcaaggtcattcattcattattacttcctactccttaatattaaaaatttttaaatggattagacgtatcctagtactacagatagaaatctattcagattcgtagtactagcttgtatgtgttcaatttaatcaatatttaattaaccacaataataccgaattagtctacacgatttctccgtcctaaaatataataactttattagatatgtttatatttttgaataggaggagtaactaatttatggtcaaattgtgacgtcaatttttttatgtggttcagaacgtgctgggcaagtcgagtgcgatcgtgtacggcgtggcactgttggcatctgggcagagctccactattaccggcacatacgctggacagtacatcatgcaggtaattaattaaattaattaacttaactgtacctgtacctgtacatcaccagctagcttagcgcgtaattaaatgattgaactataattaattaaacggctagctgccacataattaatttgttaatccgttcaattatggaggttaactgacgaattgtaggggtgcacacctaatcctgtttacatcacgaatatttagtgatataatattcctttattaattaggtaatctggcgatcctcgtcggatttcaccatatgtttttgttaaagtcagatcgaattaagacgctaccttgctgccactacttaccactttcgtccatatttctccgctcttttggtctagtccatttcacggtgcagtctcatcaataaccagcgattttactgtttacatatacttagaaaaccaattgattaataaaaatatgctaacgaaactctataaattatattaaaaaaaataggatatcccatcgcaccgtaaaattttctttctgaagtgaacgttgagaaagagaacaactagttttcctaatctacctggcgggctaaccgatctagttcgagtctcattcctcttaataatctatttatgatatgaagcgtatttcagttacgggataaatcggacccgaaaatatatatttattttttcactccaaaggactgatcttcaggatatactcactccgtctctaaatatttgacgtcgttgactttttataaatatgtttgaccgttcgtcttatgcaaaaacttttatgaatattatttaaaaaactagagtagtagtagtatatacaacaatgaatcaaatgataagaaaagaattaataactacttaaatttattgaataagatgaatggttaaacatgtttagaaaaatcaacggcgtcaaatatttaatgacggaaggagtatatgataaatcatcatcatgtcgcgttgatatatatgatatgatccatgtatgtgcagggtttcttggacatcaggatgaggaagtggcttcggaacctgatgacaagaaccatcgccatcgcgccgagcctcatcgtctccatcatcggcggctccaggggcgccggccgcctcatcatcatcgcttcggtcagcatttttattattactatttactatagcaaatctttactattattactattttactatagcaaactgcgtgcgccatacggcggcgcccgccggcgagcaaccggccggccgtcgtgtcgccgatcgattaaaatttaatgcgtttaaatttttaattttgcacatgcccaaacagtcacgtgtgtgcagtcgatcgtgcggatttatgtagctagctaggtagtagtggggtatccactaggtacctagtgacatagtactaagagcatatatatatgtcattagagcaaaagcactttttcttctttttttagattattgccaaatcaaagtagtgatctgattagcaaaatgtcactgactagctaggtatcttttctttttttgcaatctgatctaaaatagcaccatgcatatatataatacagtgtaccatctagctagactagcttccaactcaataagtaaggactaattatatataattaaatcaaatcaaagtagtgatctgatcattgctagttcttgtttgcttaattacatatatatgattaattgttcctaatccgtacgtgttgtgtgcatgcagatgatactgtccttcgagctgccgtttgctctcatccctcttctcaagttcagcagcagtaagagcaagatggggccccacaagaactctatctatgtaagatcgtacactatatatatgcattgcttaattatagtttgtttcttaatctcaattggcagcaaatgtacaagtaacataaatatatgcatctatctgtccatgcatgaaattagagtttcaataattgttggtaaagaatataaattaatgatgatagttggctagctagctggtccttcaccctgcatgcatgcaacccctacaggacaccatgttctataggtcagtgtgtgcataatatagatcgagatgtgcagtgaattgaattgaatcattagctacctagctcatgcaatagtattatagcacagcaggggccaatgcaggacaggtatatatatggtccagccatgcatatagaggatcgtcgtacatatgaaaacgacgaccaagatgtacgtcctgcatcatttttctgtcttgcagtagtaccagagattaatcatgtattgcgtcgtcggcatgatgtgtcaaaatcatgcagtaacgtacttgcttgatctttacagacatcgaagagccaagttcttcagtacactatatatattttttcttgcatggaagtaaaatgtaaatataatttaacatagatcattacgtatgtcgttgtatctctacttaaacatttctagacacatacaagtcaacattagaaaatgtaattcttttttaaggaccataaataaactgatctacaacaaaattgaacaaatgtaaatttatttcttattattacacacatggctatatatatatatatatatgtgtgtgtatatatatatatatgtgtatatatatatatgtgtatatatatatatatatatatatgtatatatatatatatatactacctataaaaattgcgcatgctcatcagtcgatacccgttaaaaagatatataagttaccacccgtcaaagatgactggttatttagtgacgctatcaatgaattaattagcgtcatgtatgtcaaaaaataaattgaattgaattgaatgcagataatagtgttctcgtggttcctgggtctgctcatcatcggcatcaacatgtacttcctgagcacgagcttcgtcggctggctcatccacaacgacctccccaagtacgccaacgtgctcgtcggcgccgccgtcttcccgttcatgctcgtctacatcgtcgccgtcgtctacctcaccatcaggaaggactccgtcgtcaccttcgtcgccgactcctccctcgccgccgtcgtcgacgccgagaaggccgacgccggcgacctcgccgtcgacgacgacgagcccttgccgtaccgcgacgacctggccgacatcccgctcccaaggtagagaagaagaagatcgacatgcatacgtatggtatagcgtatgtatacgtacgtatatacgcgtacattgtgaatatacgtacttacgtacgtatatgtgcatcctctatggatgccacgtgcgtgcgtcggagccgttcgtttatatttgtgcggtccagatcgctcgcagatcgatcgatcgacaagggtgtgcaattaatatataagcatttgaggggaggtggctcatgtatccttgtaatttatatgtacgatatgatttatcataattcagggcagagccaacgtcct</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0257200, RefSeq:Os07g0257200

  1. ↑ 1.0 1.1 Cite error: Invalid <ref> tag; no text was provided for refs named ref1
  2. ↑ 2.0 2.1 2.2 2.3 Cite error: Invalid <ref> tag; no text was provided for refs named ref2
  3. ↑ 3.0 3.1 Cite error: Invalid <ref> tag; no text was provided for refs named ref3
  4. ↑ Cite error: Invalid <ref> tag; no text was provided for refs named ref4
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