Difference between revisions of "Os04g0542800"
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==Annotated Information== | ==Annotated Information== | ||
| + | [[File:OsYSL16.jpg|right|thumb|270px|'''Figure 1.''' ''Wild-type lines VS. OsYSL16 knockout lines (from reference<ref name="ref1" />).'']] | ||
===Function=== | ===Function=== | ||
Please input function information here. | Please input function information here. | ||
Revision as of 03:30, 30 August 2013
The rice Os04g0542800 was reported as OsYSL16 more than three times since the year 2012. As a memeber of YSL (yellow stripe 1-like) gene family, it can regulate the trasportation of copper and iron ions [1][2][3][4].
Contents
Annotated Information
Function
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Expression
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Evolution
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You can also add sub-section(s) at will.
Labs working on this gene
- Institute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan
- Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, USA
- Graduate School of Biotechnology, Kyung Hee University, Yongin 446-701, Korea
- Department of Plant Molecular Systems Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea
- Research Institute for Bioresources and Biotechnology, Ishikawa
- Prefectural University, 1-308 Suematsu, Nonoichi-machi, Ishikawa 921-8836, Japan
- Key Laboratory of South China Agricultural Plant Genetics and Breeding, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, People's Republic of China
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, People's Republic of China
References
- ↑ 1.0 1.1 Zheng L, Yamaji N, Yokosho K, et al. YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice[J]. The Plant Cell Online, 2012, 24(9): 3767-3782.
- ↑ Kakei Y, Ishimaru Y, Kobayashi T, et al. OsYSL16 plays a role in the allocation of iron[J]. Plant molecular biology, 2012, 79(6): 583-594.
- ↑ Lee S, Ryoo N, Jeon J S, et al. Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency[J]. Molecules and cells, 2012, 33(2): 117-126.
- ↑ Liu T, Zeng J, Xia K, et al. Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice[J]. Rice, 2012, 5(1): 1-14.
Structured Information
| Gene Name |
Os04g0542800 |
|---|---|
| Description |
Similar to Iron-phytosiderophore transporter protein yellow stripe 1 |
| Version |
NM_001059985.1 GI:115459699 GeneID:4336546 |
| Length |
3769 bp |
| Definition |
Oryza sativa Japonica Group Os04g0542800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:27582526..27586294 |
| Sequence Coding Region |
27582813..27583741,27583832..27583949,27584088..27584277,27584402..27584536,27584658..27584755 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:27582526..27586294 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:27582526..27586294 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaccgccacgcgctgggcggcggtggcgcgctggagatcgagaagacgccggaggcggcggaggacatggagtcggagcccgcgctggcggcggcgcgcgaggcggagcgcgtcccgccgtggcgggagcaggtgaccgcccgcgggatggtggcggcgctgctgatcggcgtggtgtacacggtgatcgtgatgaagctgagcctcaccacggggctcatccccacgctcaacgtctccgccgcgctgctcgccttcctcgcgctccggggatggacgcacgcgctcgaccgcctcggcattgcctcccgccccttcacccgccaggagaacaccgtcatccagacctgcgccgtcgcctgctacaccatcggctacggcggtggattcgggtcgttcttgctggggctgaacaagaagacgtacgagctgtccggcgcgagcacgccggggaacgtgccggggagctacaaggagcccgggatcgggtggatgacggggttcctcctctccaccagcttcgtggggctcctcaccttgctccctctccgaaaggtgctggtcatcgactacaagctaacatatccaagtgggacagcgactgctgttctcataaacgggtttcacacgcctcaaggagataagaatgcgaaaaagcaagtccgtggattcctcaggtatttcggcatcagcttcttgtggagcttcttccagtggttctacaccggcggtgacgtctgcggattcctccagttccctacctttgggctgaaagcttggaaacatacatttttcttcgacttcagtctcacgtatgttggtgccgggatgatctgttctcaccttgtcaacctctctctcttgttcggcgcgatcctctcctggggaataatgtggccgctcatcggcaagcagaaggggaattggtactctgctaaggcatctgaaagtagcatgtcgggcctgttcggttacaagtccttcatctgcattgcacttctcgttggagatggcttctacaacttcgtcaaagtgatcgttgtcactctcaagagcgtacgcgaaagatcaaggcgcaggggtcttaacaacagagtggcggacgcggacaccatggcgatcgacgacatgcagcggaacgaggtgttcaaccgggacaacatcccgacctggatggcgtacaccgggtacacgctgctcagcgtcatcgccgtggtcctcatcccggtgatgttccggcaggtgaagtggtactacgtgatcatcgcgtacctgctggcgccggcgctggggttctgcaacgcctacggcacggggctcaccgacatgaacatggggtacaactacggcaagatcgcgctcttcatcttcgcggcgtgggccgggaaggacgacggcgtggtggccgggctcgtcgggtgcgggctggtgaagcagctggtgctcatctccgccgacctgatgcacgacttcaagacgggccacctgacgctgacctcgccgcggtcgatgctggtcgggcaggtggtgggcacgctgatggggtgcgtcgtcgcgccgctcaccttcttcctcttctacaaggcgttcgacgtcggcgaccccaacgggtactggaaggcgccgtacgcgctcatctaccggaacatggccatcatcggcgtggaggggttctcggcgctgccgaggcactgcctgcagctgtgcgcggggttcttcgcgttcgcggtgctcgccaacctggcgcgggacttcctgccgcgcaggtacgggcggtacatgccgctgcccatggccatggccgtgccgttcctcgtcggcgccagcttcgccatcgacatgtgcgccggcagcctcgtggtgttcctctggcacaggttcgacggcaagagggccgcgctgctcgtgccggccgtcgcgtccggcctcatctgcggcgacgggatttggacgttcccttcgtcgctgctcgcgctggccaaggtcaagccacccatctgcatgaagttcataccgggaaactag</cdnaseq> |
| Protein Sequence |
<aaseq>MDRHALGGGGALEIEKTPEAAEDMESEPALAAAREAERVPPWRE QVTARGMVAALLIGVVYTVIVMKLSLTTGLIPTLNVSAALLAFLALRGWTHALDRLGI ASRPFTRQENTVIQTCAVACYTIGYGGGFGSFLLGLNKKTYELSGASTPGNVPGSYKE PGIGWMTGFLLSTSFVGLLTLLPLRKVLVIDYKLTYPSGTATAVLINGFHTPQGDKNA KKQVRGFLRYFGISFLWSFFQWFYTGGDVCGFLQFPTFGLKAWKHTFFFDFSLTYVGA GMICSHLVNLSLLFGAILSWGIMWPLIGKQKGNWYSAKASESSMSGLFGYKSFICIAL LVGDGFYNFVKVIVVTLKSVRERSRRRGLNNRVADADTMAIDDMQRNEVFNRDNIPTW MAYTGYTLLSVIAVVLIPVMFRQVKWYYVIIAYLLAPALGFCNAYGTGLTDMNMGYNY GKIALFIFAAWAGKDDGVVAGLVGCGLVKQLVLISADLMHDFKTGHLTLTSPRSMLVG QVVGTLMGCVVAPLTFFLFYKAFDVGDPNGYWKAPYALIYRNMAIIGVEGFSALPRHC LQLCAGFFAFAVLANLARDFLPRRYGRYMPLPMAMAVPFLVGASFAIDMCAGSLVVFL WHRFDGKRAALLVPAVASGLICGDGIWTFPSSLLALAKVKPPICMKFIPGN</aaseq> |
| Gene Sequence |
<dnaseqindica>2554..3482#2346..2463#2018..2207#1759..1893#1540..1637#968..1140#491..875#gtggtggcgttcgtctgatcgtcgtctccgagcggtgctgctgttttcgcagggaggacagtacaggtgagaggtttctgcatgcggtgctcgttacaatttggtgttggattgtgcttttgctgcctttctggtttctgctcgtgatttgtggttcttttgttcgtcgccttgttggcctctgtcattactgacccccgtggagcagagtggcagatggccaaatgcctctggctttgctagaagccaattttataactaatcctgcccgtttcaattcaacggcgcttgtactcttctgtctaatgcaagggcgctgggcgcacatggatgggttgttggattgtgtcgccctggtacgcgtaaacaaatgtgctcacgattacatctctcccctgcagccgccgcggccaccggtgccgccgccgacgtctcggagctcgagctgctagtccccagggggggcgcctcgtcgggtgcggccggcagcatggaccgccacgcgctgggcggcggtggcgcgctggagatcgagaagacgccggaggcggcggaggacatggagtcggagcccgcgctggcggcggcgcgcgaggcggagcgcgtcccgccgtggcgggagcaggtgaccgcccgcgggatggtggcggcgctgctgatcggcgtggtgtacacggtgatcgtgatgaagctgagcctcaccacggggctcatccccacgctcaacgtctccgccgcgctgctcgccttcctcgcgctccggggatggacgcacgcgctcgaccgcctcggcattgcctcccgccccttcacccgccaggagaacaccgtcatccagacctgcgccgtcgcctgctacaccatcggctacggcggtagctctcctgtctcccctcccctctcatcaccccggccaatcttggcgtctcgttgcgctaaccgcgtcgcgcgttcgcgtggagcacaggtggattcgggtcgttcttgctggggctgaacaagaagacgtacgagctgtccggcgcgagcacgccggggaacgtgccggggagctacaaggagcccgggatcgggtggatgacggggttcctcctctccaccagcttcgtggggctcctcaccttgctccctctccgaaaggtacactactgactccctttgctcttctttgattttcccctttccatgccgtacctttcagcgtttaccgtttctgacagattccctgaattttccgagattgatctttactgtcatacgttctgaaaaaaatggcattggttgtacgatcgttcagcatcagagttgcaatcgttgaccacgattaacaaacattaaccatcgttttctccttttctcacttattaaggacctgttgtgtctttcagttatggtttggagtgctacagtacactactgataaagtctattctacacgtttattgtgtccttcagtctttttttttctgaacaaaaagtgggctaattatcgcaatcatgcaaaaatgaaggaatctgataaaaaccgatattttgcaggtgctggtcatcgactacaagctaacatatccaagtgggacagcgactgctgttctcataaacgggtttcacacgcctcaaggagataagaatgcgaagtaagctctttatttcagatttcagccaagtgctgatgaaatcatgattgagccgaccaaaaacgctgcagaaatagttgggattcactgacttgattcaatggtttcccctcaatgccagaaagcaagtccgtggattcctcaggtatttcggcatcagcttcttgtggagcttcttccagtggttctacaccggcggtgacgtctgcggattcctccagttccctacctttgggctgaaagcttggaaacatacgtaatttttttactgtttccatacaatttttatttactgtttctttttcactgatcattgtatgcttcagtggtaaagccgcaacaaaaacaactttttgctgagtaatttcttccatcaccagatttttcttcgacttcagtctcacgtatgttggtgccgggatgatctgttctcaccttgtcaacctctctctcttgttcggcgcgatcctctcctggggaataatgtggccgctcatcggcaagcagaaggggaattggtactctgctaaggcatctgaaagtagcatgtcgggcctgttcggttacaaggtgtgttcatcagttcacctgtcccaataatggtacatttgtagtactactagactagttcaggcagcacaatatatacacatttcctagctttttttttttttgaaaaaaaaaaactcaacatcgctacctgtgcagtccttcatctgcattgcacttctcgttggagatggcttctacaacttcgtcaaagtgatcgttgtcactctcaagagcgtacgcgaaagatcaaggcgcaggggtcttaacaacagaggtaaatgcaccgtaaaaaaagatttagatcgcctcgcgtattttcagttcaggctgaagcttacaggagtagttcattacgcatttgcagtggcggacgcggacaccatggcgatcgacgacatgcagcggaacgaggtgttcaaccgggacaacatcccgacctggatggcgtacaccgggtacacgctgctcagcgtcatcgccgtggtcctcatcccggtgatgttccggcaggtgaagtggtactacgtgatcatcgcgtacctgctggcgccggcgctggggttctgcaacgcctacggcacggggctcaccgacatgaacatggggtacaactacggcaagatcgcgctcttcatcttcgcggcgtgggccgggaaggacgacggcgtggtggccgggctcgtcgggtgcgggctggtgaagcagctggtgctcatctccgccgacctgatgcacgacttcaagacgggccacctgacgctgacctcgccgcggtcgatgctggtcgggcaggtggtgggcacgctgatggggtgcgtcgtcgcgccgctcaccttcttcctcttctacaaggcgttcgacgtcggcgaccccaacgggtactggaaggcgccgtacgcgctcatctaccggaacatggccatcatcggcgtggaggggttctcggcgctgccgaggcactgcctgcagctgtgcgcggggttcttcgcgttcgcggtgctcgccaacctggcgcgggacttcctgccgcgcaggtacgggcggtacatgccgctgcccatggccatggccgtgccgttcctcgtcggcgccagcttcgccatcgacatgtgcgccggcagcctcgtggtgttcctctggcacaggttcgacggcaagagggccgcgctgctcgtgccggccgtcgcgtccggcctcatctgcggcgacgggatttggacgttcccttcgtcgctgctcgcgctggccaaggtcaagccacccatctgcatgaagttcataccgggaaactagccaatgcatcgctgtaatttacagcgtcaatgcagacgtatagatcgtaaaaaaagagatcgtatagacgtatagcgtcaatgcagaaacactagaaaagagatcgtgtatcgagcgttttggacttagatttaagatttaggcgcagcgagaggaagaacgggtgtagctatgacggataaatccccaaaagcagaaatgctgttcataggggttggggttctgtactgtgtatatcagttgagaagaaaattagatgaaaacacaacaattagttgtgcttattg</dnaseqindica> |
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