Difference between revisions of "Os02g0141300"
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===Evolution=== | ===Evolution=== | ||
Please input evolution information here. | Please input evolution information here. | ||
| − | + | A closely related protein, Os06g0702500, was also found in the rice genome. This polypeptide comprised 994 amino acids with 79% amino acid sequence identity to CAP1 (Fig. 3B). Similar proteins were found in many higher plants, including Gramineae and Arabidopsis (between 90% and 71% amino acid identity), the fern Selaginella moellendorffii (67%), and the moss Physcomitrella patens (63%; Figs. 3 and and4).4). In Gramineae, there were at least two similar proteins in a genome that were divided into two phylogenetically distinct clades, the CAP1 clade (with about 90% identity to CAP1) and the Os06g0702500 protein clade (about 80% identity; Fig. 4). The Arabidopsis genome also contained two genes similar to CAP1; AtARA1 (At4g16130) had 75% amino acid identity to CAP1 and encoded arabinokinase (Dolezal and Cobbett, 1991; Gy et al., 1998; Sherson et al., 1999), and At3g42850, tentatively referred to as AtARA2, had 71% identity. Similarly, Os06g0702500 was tentatively termed OsARA1. CAP1 and the other proteins exhibited similar domain structures to AtARA1 (Fig. 3A). | |
You can also add sub-section(s) at will. | You can also add sub-section(s) at will. | ||
Revision as of 07:02, 5 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
The gene CAP1 is a highly conserved plant-specific gene that encode a protein of 996 amino acids which appears to act as an arabinokinase.
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here. A closely related protein, Os06g0702500, was also found in the rice genome. This polypeptide comprised 994 amino acids with 79% amino acid sequence identity to CAP1 (Fig. 3B). Similar proteins were found in many higher plants, including Gramineae and Arabidopsis (between 90% and 71% amino acid identity), the fern Selaginella moellendorffii (67%), and the moss Physcomitrella patens (63%; Figs. 3 and and4).4). In Gramineae, there were at least two similar proteins in a genome that were divided into two phylogenetically distinct clades, the CAP1 clade (with about 90% identity to CAP1) and the Os06g0702500 protein clade (about 80% identity; Fig. 4). The Arabidopsis genome also contained two genes similar to CAP1; AtARA1 (At4g16130) had 75% amino acid identity to CAP1 and encoded arabinokinase (Dolezal and Cobbett, 1991; Gy et al., 1998; Sherson et al., 1999), and At3g42850, tentatively referred to as AtARA2, had 71% identity. Similarly, Os06g0702500 was tentatively termed OsARA1. CAP1 and the other proteins exhibited similar domain structures to AtARA1 (Fig. 3A). You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os02g0141300 |
|---|---|
| Description |
Galactokinase family protein |
| Version |
NM_001052393.1 GI:115444156 GeneID:4328266 |
| Length |
8534 bp |
| Definition |
Oryza sativa Japonica Group Os02g0141300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 2:2230686..2239219 |
| Sequence Coding Region |
2231383..2231493,2231646..2231849,2231945..2232016,2232293..2232458,2232543..2232758 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008395:2230686..2239219 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008395:2230686..2239219 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgaggattcggggagacggcggaggtgatgaggaggaggcggcgatggcggtggtgtcggcgccgccgcagcatctggtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggtggtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccggagttcgtcttcaccaccgagatcagctcgcccaacctccacatccgcaaggtgctcctcgactgcggcgccgtccaggccgacgccctcaccgtcgatcgcctcgcctccctcgagaagtatcatcagacggccgtgatgccacgcgaatcgattctgaggactgaggtggaatggctcaacacgatcaaggccgacctagtggtttcagatgtcgtccccgtcgcgtgcagggcggctgcggatgctggcattcgatcggtgtgcgtcaccaatttcagctgggacttcatttatgcagagtatgtcgtagtagctggacatcatcatcgctcaattgtgtggcagatagcagaagattattcacattgtgaattcttactacgactccctggatactgccctatgcctgctttccgtgatgtcattgatgttcctcttgtggtgagaagattgcataaatctagatctgaggtgaggaaggaattaggaattaaagatgatgttaaggtggtcattttcaactttggaggacagcctgcaggatggaaactgaagaaagaatggctgcctgatggttggctctgtttggtatgtggtgcatctgaaactcaagagcttccaccaaatttcattaaacttgcaaaggacgcctatacacctgatttgatggcagcatctgactgcatgcttgggaaaattggatatggcactgtgagtgaggctttggcttacaagctgccatttgtatttgttcgtagagattatttcaatgaagagccgtttttgaggaatatgcttgagcattatcaatgtggcgttgagatggtacggagggatttacttactggacactggaaaccttatctgcaacgtgctatgacacttcatccatgctatgatggtccaataaatggtggtgaggtggctgcacatatcctccaggacactgctgttggcaagaagtatatttctggcaagttgagcggagcaagacgtttgcgtgatgccatagtgctaggatatcaactacaaagggctccagggagagatgtcggaattcctgactggtattctgtgtctgagaaagaaatcggtgttcgtccagcaccaacatatcatgaggttaatggaagtgcagagtcatcttttgaggacttcgagatactccatggggacatacaaggattaactgatacaatggcatttttaactagtttatcaggacttgttggaaatgatccaaggagccctgagaagcaatctcgagagagggttgctgcttctgttttctttgattgggaggaggaaatatatgttgcaagagcacctggacgtttagatgtcatgggtggcatcgcagattattcaggaagtcttgtattacagatgcccattcgagaggcttgtcatgttgctattcagagaagtaatcctatgaagcagaagctatggaagcatacacaagctaggcaactagcaaatggcagagcagtgccgttgttacaaattgtatcatttggttctgaattgagtaatcgtgcaccaacctttgatatggacctgtctgattttatggatggtgacaaaccaatatcctatgataaggccaaagaatatttctctcaggacccatcccaaaaatgggctgcatatgttgctggaacaatccttgtgttgatgaccgagctaggtgtggtcttcacagacagcatgagcattctggtttcttcatcagttcctgaaggtaaaggtgtctcctcttctgcatcagtggaggttgccagtatgtctgctattgctgctgcctatggtctaaatatccctccacgggatcttgccatactctgccaaaaggttgagaatcgcattgttggagcaccttgtggtgtaatggatcaaatgacatctgcttgtggagaagctaacaaacttcttgcaatgatttgtcagcctgcagaagtgaaagagttggtcagcattccaactcacattcgattttggggtcttgactctgggatacgacatagtgttggtgggactgattatggctctgtaagggtaggcacttacatgggacgcaagatgatcaagtgtgctgcatctgatcttctttcagaatcattaccctcctgtcctcctattcaatcaggcaacacaaattctgatgaatacgaagaacatggtgtagatcttttgaaatctgaagcgtcgctggagtatttatgcaacctaccacctcatagatatgaagctgtttacgcgagagatattccagagatcataaccggggatgcatttttggagaagtatggagatcataatgatgcagtaacaactgttgacccaaaacgatcttactgtgtgaaggctcctactagacatcctatatacgagaacttccgagttgaggccttcaaagcattgctaacagcagccaaaacagttgagcaactttcggcccttggagaattgatgtatcagtgccactacagctacaatgcttgtgggcttggttctgatggaaccgacaggcttgttaatatggtacaagaagtccagcacaggaagacctcacaggatggtggtcctagtttatttggtgcaaagataactggtggaggatctgggggctcggtttgtgtcattgggaaaaattgcttgaaaagcagtgaagagatttttgagattcagaagagatacaaagctgctaccgggtacctaccaattgttttcgagggctcatctccaggtgcaggcaagtttggatacctgaagattcgacggcgatccacatag</cdnaseq> |
| Protein Sequence |
<aaseq>MRIRGDGGGDEEEAAMAVVSAPPQHLVFAYYITGHGFGHATRAL EVVRHLIAAGHDVHVVTGAPEFVFTTEISSPNLHIRKVLLDCGAVQADALTVDRLASL EKYHQTAVMPRESILRTEVEWLNTIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD FIYAEYVVVAGHHHRSIVWQIAEDYSHCEFLLRLPGYCPMPAFRDVIDVPLVVRRLHK SRSEVRKELGIKDDVKVVIFNFGGQPAGWKLKKEWLPDGWLCLVCGASETQELPPNFI KLAKDAYTPDLMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEHY QCGVEMVRRDLLTGHWKPYLQRAMTLHPCYDGPINGGEVAAHILQDTAVGKKYISGKL SGARRLRDAIVLGYQLQRAPGRDVGIPDWYSVSEKEIGVRPAPTYHEVNGSAESSFED FEILHGDIQGLTDTMAFLTSLSGLVGNDPRSPEKQSRERVAASVFFDWEEEIYVARAP GRLDVMGGIADYSGSLVLQMPIREACHVAIQRSNPMKQKLWKHTQARQLANGRAVPLL QIVSFGSELSNRAPTFDMDLSDFMDGDKPISYDKAKEYFSQDPSQKWAAYVAGTILVL MTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAAYGLNIPPRDLAILCQ KVENRIVGAPCGVMDQMTSACGEANKLLAMICQPAEVKELVSIPTHIRFWGLDSGIRH SVGGTDYGSVRVGTYMGRKMIKCAASDLLSESLPSCPPIQSGNTNSDEYEEHGVDLLK SEASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKYGDHNDAVTTVDPKRSYCVKAP TRHPIYENFRVEAFKALLTAAKTVEQLSALGELMYQCHYSYNACGLGSDGTDRLVNMV QEVQHRKTSQDGGPSLFGAKITGGGSGGSVCVIGKNCLKSSEEIFEIQKRYKAATGYL PIVFEGSSPGAGKFGYLKIRRRST</aaseq> |
| Gene Sequence |
<dnaseqindica>7727..7837#7371..7574#7204..7275#6762..6927#6462..6677#6271..6347#6069..6164#5940..5983#5698..5785#5334..5415#5129..5259#4834..4956#4333..4416#4076..4235#3806..3969#3341..3397#2942..3061#2724..2833#2531..2633#2378..2431#2052..2114#1895..1962#1751..1808#1470..1536#911..987#704..787#392..568#76..210#gtggagtctctgataataagtgtcgatttttgttgttccgggagaaattccgggagatttggggcggcggcggcgatgaggattcggggagacggcggaggtgatgaggaggaggcggcgatggcggtggtgtcggcgccgccgcagcatctggtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggtctcgtcttctcttttttctcgttttggggaggattgattcgtgtttgtctccgtgcgatgaaattttggtttctgcgcggaattttggtttcgtggctggatggatggattcgctgctgtttgagtttttttttaatttttatttggggtgatggaattttggtttgtggttagtgcaggtggtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccggagttcgtcttcaccaccgagatcagctcgcccaacctccacatccgcaaggtgctcctcgactgcggcgccgtccaggccgacgccctcaccgtcgatcgcctcgcctccctcgagaaggttccagaaacatactccaatatctccactctactacctgctactgctacaacatccaccactcttgctcttgctgtgctgtgctttgcctgtggatttgtggctgattgagtgattgtgtggtgcggaatgcagtatcatcagacggccgtgatgccacgcgaatcgattctgaggactgaggtggaatggctcaacacgatcaaggccgacctagtggtaatgctcctgaggatgctaacaccaactacttgctcgatttttttaatctgtttttatccggggtctccatgaatctttacagcatctgaagcaaatgtggtgttgttggtctttggtcaggtttcagatgtcgtccccgtcgcgtgcagggcggctgcggatgctggcattcgatcggtgtgcgtcaccaatttcaggttagtgtttctgtggttgcttcatgctaggggtcaaaaggagcaatgaggatgtagagtgagctttagaattattagttacagcctttgtgggttcccatattattccaagtttatgttaacattttgcttggggttatatgtttcatcagtgcatagttgctacagttacctgacttttatatgttttgcctgctaacattcatttcctgatgtaatcagtactaacgctgaacacaaaagttatctactaacccacaagaaatctgcagctctgagtgatgctaacaataaattttagttatggctttacccgaaattgactagttgtaaacataattttttctctccatttatttttataattcgggctattgaagaaatttacatggatagttttatttgcagtttttcttgcttcttttttgagtagttatttttgaatcaaagcacggtctttaattttcaccttctatttgcagctgggacttcatttatgcagagtatgtcgtagtagctggacatcatcatcgctcaattgtgtggcaggtgcctgtcatttcatttcccaaaaatggtgcaaaattgtctaattggtttgctaatgctaactactaaattcctaaagccacctagacaccggattcaaatttcttgatttttttttgagaaaactgttctctgtaatatcgttctttagttgcaagttgagactaattcagcccgttcaataaccatgcatttatgttggcatcaactgcagatagcagaagattattcacattgtgaattcttactacgactccctggatactgccctagtacgtctatatgtctgaatgaataatatatccaaagatcctgcatgttggtttgaagtactcgtgattaattctatcttctgcagtgcctgctttccgtgatgtcattgatgttcctcttgtggtgagaagattgcataaatctagatctgaggtgcgtacaactctgctggacaatgtttgctctgaacactcaacccatgttctcagttcttgatgacttaaaaaatctccatatatcaggtgaggaaggaattaggaattaaagatgatgttaaggtggtcattttcaactttggaggacaggtaaaccattaaatagcctgaatgttctttctcgtttatagatgctcgattttgttcaattaatggatgttagttgcatatttctgttaaatcatttttttttgaaagggctatatttatgttaaatcaatatgtccttttagaccagctaaggtttctgtctttctgctgttattggtagtcagtacaatccatagttgaatttgctaccatcttatgcaagtattgctgatgcaatgccattgtgatggtttcctcttcagcctgcaggatggaaactgaagaaagaatggctgcctgatggttggctctgtttggtatattttctttgaaactacgtgttttcttctctcttctttctctctctcttaataatgtctggacaacatttgtgaccaaattctattttcataaaggtatgtggtgcatctgaaactcaagagcttccaccaaatttcattaaacttgcaaaggacgcctatacacctgatttgatggcagcatctgactgcatgcttggtaaatacagtgctatattatctgtgttagggctatttaccgccttatttcttttctagaaatgtaacaattctgttggttgttgcatagggaaaattggatatggcactgtgagtgaggctttggcttacaagctgccatttgtatttgttcgtagagattatttcaatgaagagccgtttttgaggaatatgcttgaggttgaaacatctcgaagtatagtttcattttaagaattcgtacttatagagcatcagtcatgaaccttgatgtcctgttctatatcctcttttcttcctaataaacagcattatcaatgtggcgttgagatggtacggagggatttacttactggacactggaaaccttatctgcaacgtgctatgacacttcatccatgctatgatggtccaataaatggtggtgaggtaatgtccttacagttctcagatatgggtctgtgagggttgtttgggaactcaagctagtaaccatcttgtaaattttattttttttttatgatggctgatttttaaaactgaaataccatactagccataggttgaagttcatcctgaatcaattcttccgtaagtcatgaagagtcaactggatacttgcatcatgttttcctcaaaccagatgtgattcacagactttcttgattgcatttataatacaagataagctaataattattcgttcaggtggctgcacatatcctccaggacactgctgttggcaagaagtatatttctggcaaggtgagttactaacataaattgttgatacattattgttcagttgtaccttgaaactttcagataaaagtgagactttgatatcttcagttatctgtatttggtgtcgtatggaacttttgttgctttcatactacacatataaagtgataagttgaacataagtaaacacttctgccttttcttgtcatgttactcattaaaagcatttcacccctggaggtttttattaattcttttgctcaagaatattttttttatggaactgtccacctagttgctaattcccaattcagaacagaggatttatctactgctctggaacttgaaaacctatgaagttttaaagttacaagagttttttttttcacaacttctggacttagtatttgcactactctacaattacagttgagcggagcaagacgtttgcgtgatgccatagtgctaggatatcaactacaaagggctccagggagagatgtcggaattcctgactggtattctgtgtctgagaaagaaatcggtgttcgtccagcaccaacatatcatgaggttaatggaagtgcagagtcgtaagtttccatatcctttcttttcccctcataataacatgtactttatccaataacacactttatcatatccccgtccattcaaataattttgttttggtgtcagatcttttgaggacttcgagatactccatggggacatacaaggattaactgatacaatggcatttttaactagtttatcaggacttgttggaaatgatccaaggagccctgagaagcaatctcgagagagggttgctgcttctgttttctttgattgggaggtactatacaagcataaaaataatacactgatttttttgggaaactattgatatgttataggggaaaatcattttcgaatgatttattctgttgtaggaggaaatatatgttgcaagagcacctggacgtttagatgtcatgggtggcatcgcagattattcaggaagtcttgtattacaggtagtttcaaatgcaagagaaagtggcatttcttatagatgagccttcctgtaattccactatgtgataaaactttcacacaaatgatttcaaattttcaatatttaaagattcttcaattctgcatttgactatcattttagtttgtttctgtaactttccttgcatctcctcttgataccattgaaggtaggggttcctcctgcatgtattgtggaatgatatattgacatatacctggaaaactctgaatacatgcatgttctatagaccttcctacaattatttttagatagatgaataaatattatgtctccttgtaagttactaagttattgattgatttgatatatttaaaacataaagaaagtttcttttggcatatgcgattgacattgagatggtccaaattaccagatgcccattcgagaggcttgtcatgttgctattcagagaagtaatcctatgaagcagaagctatggaagcatacacaagctaggcaactagcaaatggcagagcagtgccgttgttacaaattgtatgttatttatcactaactctctaagcatcttcgcttaccttttcttatccttattatgcgttcttaaaacttaattcatttgacaaccaaagatgtagcatatatttagttggatgcttcacagctcatttggacgactgggatcttcttactaaatatgtctgtacaggtatcatttggttctgaattgagtaatcgtgcaccaacctttgatatggacctgtctgattttatggatggtgacaaaccaatatcctatgataaggccaaagaatatttctctcaggacccatcccaaaagtaagaaagatcgtttgttttactctataaaaatcataacttgtcatgcatattcattcttggttctggttcagatgggctgcatatgttgctggaacaatccttgtgttgatgaccgagctaggtgtggtcttcacagacagcatgagcattctggtaagctttgatcctttctgttttcaatcagaatgcagtaatatatgtaaaattccacctctttgtccagtttgtcacctttctcatattggggagataaagagatattcagaactcaaaaggaatattgtttattagtcacaaaaagaaaacagcatctttcacactttctccttccacattctaatcaatcaagtgtttccttccacattctaatcaatcaagtgttctaactcgaatgtttgtattggtcattcatgataattttatttgaatcctcaggtttcttcatcagttcctgaaggtaaaggtgtctcctcttctgcatcagtggaggttgccagtatgtctgctattgctgctgcctatggtaaacgattgacttgaacatctttgttgtaataatgccactattttctttcttttggttggatatctagttctgcagcagccaccactgttgcacatttaacttaactgggcgtgctagttgacatcaattcatgttcttgtcttggcttcaggtctaaatatccctccacgggatcttgccatactctgccaaaaggtaaagtactaataaatgaagggatatagcttcagaatgtggtaggtcttctattgcagagagtcattctttggtgactatgcaggttgagaatcgcattgttggagcaccttgtggtgtaatggatcaaatgacatctgcttgtggagaagctaacaaacttcttgcaatgatttgtcaggttagtaagggtacccagctcttggaggaagtagctaccagacccagtcattcctcagtccaactttgcatttcctctataattaattgatcaaattttgctgcagcctgcagaagtgaaagagttggtcagcattccaactcacattcgattttggggtcttgactctgggatacgacataggtaaatactttccatattgatatcttttgcaagattggttttattgttgggatgcatggtttggttttattgttgggatgcatagttaaccataatcttctttggttcatgcagtgttggtgggactgattatggctctgtaagggtaggcacttacatgggacgcaagatgatcaagtgtgctgcatctgatcttctttcagaatcattaccctcctgtcctcctattcaatcaggcaacacaaattctgatgaatacgaagaacatggtgtagatcttttgaaatctgaagcgtcgctggagtatttatgcaacctaccacctcataggtctcattaccttgatattgacagcaaattttatatggtccttcatagtgtatgccaggttttatgactttggcaaaatttcagatatgaagctgtttacgcgagagatattccagagatcataaccggggatgcatttttggagaagtatggagatcataatgatgcagtaacaactgttgacccaaaacgatcttactgtgtgaaggctcctactagacatcctatatacgagaacttccgagttgaggtttgatatcataaaaccagaatatctacacctctcgattcataatggctgttgatgagatccctgcatgttgttgtctgatgttctactgcttttgctgctttatcctcgttgtttgtatttttaaactttaaaataattctttgagatgtttgcaaatcagaaaactatcttgagagcgcatggttttcagaaccagctttattttttctccataaagaatagcttattcctttcactgatatttttgacacttgttatgcttctcacgtgtaggccttcaaagcattgctaacagcagccaaaacagttgagcaactttcggcccttggagaattgatgtatcaggtatctgtattacaaatgaaagcccagcactgtacatgttgattcacaaaattagcagtcagtggcactgcattgacccttttgttttctggcagtgccactacagctacaatgcttgtgggcttggttctgatggaaccgacaggcttgttaatatggtacaagaagtccagcacaggaagacctcacaggatggtggtcctagtttatttggtgcaaagataactggtggaggatctgggggctcggtttgtgtcattgggaaaaattgcttgaaaagcagtgaagagatttttgaggtattttcgacatcgttttttattgtcagttgtacacaatggatgaccataactacaaagatccaagataaaccctccaagagagttgtgattcaccataatgtttgcattttcatggtattgcatgctaacaaaatatcatttgttttcagattcagaagagatacaaagctgctaccgggtacctaccaattgttttcgagggctcatctccaggtgcaggcaagtttggatacctgaagattcgacggcgatccacatagccatcaatcagcctaactgaagatttggctgtattttaggtccacacaaacatttgtcaggaacctgaatattacctgttcatatggaacacatatcacatcatcccattatgtagtagtaataagctctctagttcatgcaataattctagtgattagtgcacctctggtgcagacttccattgtgtaagtgcagtatccagataataaaatggaagtctttagattgatgttctgcaatagctgatagcctcaacaccatccatttgcatgggtacacagtggctaccgacttcaactattggatcggaggctatgcatgcatcaaggagcagttgcatttgcaagggacaagacatggcttctgatcaagcagacagcagatgcaaactgggcattgtagagtagcagcatggccttctgttttcagatggcaagttgtgctaacctggagagatctgaatgttcagagagtaacacatccttttctccttttttggtagtatcaagcagctggatgatgatttcattcagccttatcatgaatagggcttagttagtgtattatctggaacaatcatttagcagaataattgatcagttagcttagctctagcttcttgttagagttttgttactgtttgcagaagttgatgccagaaagttgtctagaatcagagttatactgttgcctgac</dnaseqindica> 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