Difference between revisions of "Os03g0262900"

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==Annotated Information==
 
==Annotated Information==
 
===Function===
 
===Function===
−
Map-base cloning studies showed that glup6 was a loss-of-function mutant of guanine nucleotide exchange factor (GEF), which activates Rab GTPase, a key regulator of membrane trafficking<ref name="ref1" />.
+
Seeds of glup6, which belongs to the same class as the glup4/rab5 mutant, exhibit a protein pattern similar to glup4 in having elevated proglutelin levels and reduced levels of acidic and basic glutelin subunits, prolamines, and 26-kD a-globulin<ref name="ref1" />.
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===Expression===
 
===Expression===

Revision as of 08:48, 15 May 2014

The rice glup6 plays a crucial role in the same pathway responsible for the intracellular transport of proglutelins from the Golgi to the protein storage vacuoles(PSVs) as glup4[1].


Annotated Information

Function

Seeds of glup6, which belongs to the same class as the glup4/rab5 mutant, exhibit a protein pattern similar to glup4 in having elevated proglutelin levels and reduced levels of acidic and basic glutelin subunits, prolamines, and 26-kD a-globulin[1].

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

  • Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan
  • National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan
  • Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
  • Department of General Education, Yamaguchi Prefectural University, Yamaguchi 753–8502, Japan
  • Graduated School of Science, University of Tokyo, Tokyo 113–0033, Japan; and Japan Science and Technology Agency, PRESTO, Saitama 332–0012, Japan
  • State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, China
  • National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing100081, China
  • College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China

References

  1. ↑ 1.0 1.1 Ueda Y, Satoh-Cruz M, Matsusaka H, Takemoto-Kuno Y, Fukuda M, Okita TW, Ogawa M, Satoh H, Kumamaru T (2010) Gene-gene interactions between mutants that accumulate abnormally high amounts of proglutelin in rice seed. Breed Sci 60: 568–574

Cite error: <ref> tag with name "ref2" defined in <references> is not used in prior text.
Cite error: <ref> tag with name "ref3" defined in <references> is not used in prior text.

Structured Information

Gene Name

Os03g0262900

Description

Vacuolar sorting protein 9 domain containing protein

Version

NM_001056166.1 GI:115452060 GeneID:4332330

Length

5299 bp

Definition

Oryza sativa Japonica Group Os03g0262900, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:8680525..8685823

Sequence Coding Region

8682799..8682951,8683334..8683513,8684480..8685262

Expression

GEO Profiles:Os03g0262900

Genome Context

<gbrowseImage1> name=NC_008396:8680525..8685823 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:8680525..8685823 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacaaagctgttcaatcgggtatttgcttctgtcccggaagatgtgaagagtgatgaagaactttttgagaagatgtctttgttacagcagtttatacggcctgaaaacttggatatcaaaccagaatatcaaagtgaaacatcatggctgcttgcacagaaggagctgcagaagataaacatgtataaggctccaagggataagcttgcttgcatcctgaactgctgtaaagtcatcaacaacctacttctaaatgcgtctattgtatcaaatgaaaatcccccgggagctgatgaattccttccagtcctcatctatgttaccataaagcgatacagacgtcaatcacggttggtgtcagaagctcagtatttctttacaaacatcttatccgctgagtctttcatctggaacattgatggggaatcattatcaatggatgaacgagatttccaaaagaagatggacttggcaagggaacgcatgttgggattatcagctagctcagagaatcaggacaaccaaaacaatcttgatgtacgggagcaaaaatcacaaacactgaaagctagcagggattctgatgtcaatctctctttgaaagataatttccaaggtcctggactggaaatgagaagggacagtgatgcaagtagtaacccagttgagcgtgtgcaatcgatttctgatttggagaagaaaggagcagccgagcttctcaaggatgatgacttgaacaaaaaaattcaagagtacccattcctttttgcccgctctggtgatctgactgttgctgatgtagaaaaccttttaaactcctacaagcagctagtactaaagtatgtagcgctttcgcaagggatgggtatcaaccttgaaaaccctcctgttcagagcatgcaaactgtttctgatcttgtggaatctgaggagcctaaaaatgtgaagaatgcagtaaatttcagcgaaggaagcagcaaaaccagtgatgacataaaaaatgatactctttattcagaagtagacaacacgggtacccaacaaactgcggttgacccaagttatcagaaggcacagcaggatgaagcatcagatcaacctgaacatgcatga</cdnaseq>

Protein Sequence

<aaseq>MTKLFNRVFASVPEDVKSDEELFEKMSLLQQFIRPENLDIKPEY QSETSWLLAQKELQKINMYKAPRDKLACILNCCKVINNLLLNASIVSNENPPGADEFL PVLIYVTIKRYRRQSRLVSEAQYFFTNILSAESFIWNIDGESLSMDERDFQKKMDLAR ERMLGLSASSENQDNQNNLDVREQKSQTLKASRDSDVNLSLKDNFQGPGLEMRRDSDA SSNPVERVQSISDLEKKGAAELLKDDDLNKKIQEYPFLFARSGDLTVADVENLLNSYK QLVLKYVALSQGMGINLENPPVQSMQTVSDLVESEEPKNVKNAVNFSEGSSKTSDDIK NDTLYSEVDNTGTQQTAVDPSYQKAQQDEASDQPEHA</aaseq>

Gene Sequence

<dnaseqindica>2275..2427#2810..2989#3956..4738#cgcggcgacccttgacttcctcccccttctctcctcctcccacaaaacgtgaccgaatccggctgatccgagcccgccgacctccccggcttccccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcgccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtcaagtccatcaaggggttagctccgccacaaattttcggtgctaggcatatgctcgatctcagttcgtggtctagggatccgagacggaaagcgtgtgccgcgattggttcgtgttacgcggcgcgtgttggttcgatagtgtgtggtgcggggatgggcgattttgctggtatagtggggatttggggagcatttggcgtgggttcaaggggattacgttcccgtgtccttcaatatgtgttagcaaggcgatatgaccgatcgccgtgccggttttgtggggggagcttaatctagggttgctgtttgtctcttcgcctacctgttaaccgtcgtctgtgtagttccgaggtgaagtttaatgccattcctattttctatgtctagggttactgcatttggatagatgagtcgcagcacaatcgatataattgatcagtgtgccggcaatgcaacaatgcgatgtgtgtgggggttgtttgaggaaaattgcatgatcggtttatgcactttgggtgaaatatctaccttggatacagagcatagaagttaacatgcttatttagaaatacatgagttgggatttatgcacagtggcaatgacacatagtagccaaggttgtatctggagattcaacagctgggaggacaccatagttaattcttgacaaatacgcttttctatatgttaggccagaagctgggaatttggaattaaggctttgtaaactagtgagtttacttaattcttctacatgtaggagcacgcttcagcactgccttctttgcctttctttttttaccttttaaaatactagatccagcatccataactaaccaatacttgacatttatgtatgttttcgtatgggaaatacatcatttatgttgttatgtttcatgttatacagctttatcgtaacgttctcgaacagagctcctgaccctgaacatgatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacaccccctgggctggaagttctgaagaagaactagaaagtgccggtgaggtaatcaatttccttgttccgtggtactgctgatatagtaatattacataactagagagatgaacatcaaaattgaatttcagagctctatgttcttgttgattacctgcttgcaaagtaagtcgttaaatttggtttgtccaaatgtcttatgggtaatttccgtatgaactttctatagataagatatgcctgtgttctttttatttttggatttttaattgatgtcactgtgctatatgagtatatgattcttgattcgtggaccatgctgtctttcctttttgacatgatcggattaatgcattgactaaaatctgttagacaacgggatgaactaaacatcctattttggttctactttaacatgagatgaattatttctgtctttcattttccagttatcctattttctggtgaccatgcctgcttgccaaagattcaggcagtcaatccatcatgttatcataatctctgtgtttaacagagatacataataaatgcatctgacttgtatttactcccatcggaaatttggaatgcacggcttcatcaaattatctcaggcattttgattaagaatgtgttggagtactaggaaggaacttagcatccattattgatagagaagaaaatggtgagaaaacctgcgttagaagggattcgaactcaggctggtgctctgctcctggcagctccctgccagccgagctaggtgcctttcttagacactttgattaagactggcagttacgtggaattattaacttattccactagtcatgttgctgtttttaaagtgcagttcaaactcgatacttttaaacttaaactctcctttttcactctcgctctaccctttacctaccgagttcctcttcatcttattgatatattccataaaatgtcataacgttacttgcatattctccaatatatttgtcgttatatcaacatttggattgtcttgtattgtgattttagggccttgagaaatacgttatgacaaagctgttcaatcgggtatttgcttctgtcccggaagatgtgaagagtgatgaagaactttttgagaagatgtctttgttacagcagtttatacggcctgaaaacttggatatcaaaccagaatatcaaagtgaaacatcatggctggtatggaagttgatttcctctctttatacatttttagatttgtgaagatctgttacagtgcagaacctttcaataacattgaactacttgggtattgaggaacctgttgaacctgtctgtctgaagtatatttataaactaatgcttacatgtgaataacattctgcccacttcttatatacactcgctatttagtttatggcattatcatcacagtaatgctgccactgtcaaccctaatctgcgtactgtggtctaatgtcaattctttttgcttgcaaggaccttaattaagggaatacttccagtggcatgcattaactggctcagtgttcaaatatataaatgttctttactaacatatgttcccttctttgtacagcttgcacagaaggagctgcagaagataaacatgtataaggctccaagggataagcttgcttgcatcctgaactgctgtaaagtcatcaacaacctacttctaaatgcgtctattgtatcaaatgaaaatcccccgggagctgatgaattccttccagtcctcatctatgttaccataaaggtatgattcactacttgttaaagtactggttgatgatacaaatgaaccatcaaatattgacaatattatattaagttgttggtgctgtattggagaaagaaaatttgccccctttgatatggcacagattaggtgtcgacttgatggtgactatttgtgtattacctactcaactttgatattttctagaaaaaatataagcctattattggtgcagtggtacgtgatttgttgggcacattgcctcttaatagagttgtcagtgcgctgtgcaacctcatttactgttgcttcgtattacttttagttccaacttctacctatctattatgatgcaggttccatgtctaatctaatagtgagttttgtactgaaatagtttgccagatttgagagcaaccttgtcatgcactcatgcccatcagtacatgtgcttagagcaaccatgaatctgtgaaccatcagttgggcatccctcctctagctaggcactacatcagttttgattacaaatgatggttaaactttcattacaaacctaatagttggcatttgagtggttgtggacttgcttttgaaaactgcagcaaatgaccataaagggcttaagatcagatcatgtacggttatcactttacttttctcttcattaccggaaagagcttgtcaactactgaatggtaagagttaatgatatatgtgctcttctagtttggcctctcaaggtattacgtgcttctggaattactgcagttagcctaaactacccttgcaccgcaattcagcattagttgtagttttgttctatcatctgaactacaatgttatgatccttttgcctgaaaatcatctgtaaagtgtttttatttgtcatttaaattaaggtagccaaaagaatttaagcagtagctgttcttaatgcaggcaaatcctccacagttacactcaaatctattatatatacagcgatacagacgtcaatcacggttggtgtcagaagctcagtatttctttacaaacatcttatccgctgagtctttcatctggaacattgatggggaatcattatcaatggatgaacgagatttccaaaagaagatggacttggcaagggaacgcatgttgggattatcagctagctcagagaatcaggacaaccaaaacaatcttgatgtacgggagcaaaaatcacaaacactgaaagctagcagggattctgatgtcaatctctctttgaaagataatttccaaggtcctggactggaaatgagaagggacagtgatgcaagtagtaacccagttgagcgtgtgcaatcgatttctgatttggagaagaaaggagcagccgagcttctcaaggatgatgacttgaacaaaaaaattcaagagtacccattcctttttgcccgctctggtgatctgactgttgctgatgtagaaaaccttttaaactcctacaagcagctagtactaaagtatgtagcgctttcgcaagggatgggtatcaaccttgaaaaccctcctgttcagagcatgcaaactgtttctgatcttgtggaatctgaggagcctaaaaatgtgaagaatgcagtaaatttcagcgaaggaagcagcaaaaccagtgatgacataaaaaatgatactctttattcagaagtagacaacacgggtacccaacaaactgcggttgacccaagttatcagaaggcacagcaggatgaagcatcagatcaacctgaacatgcatgagttgttggtcaagtatggttggccgtcgaaatacagggaaaacgttgtcaacggcgggtcattctcttatatatcaaggggtgacaactggttacagagaagtgggtgcattgctgtgctcctgaagccacaaaatgtaaatgctggaaactagaatatagagattcaagtccctggaaactagaatatagagattctcttatatcagcgtcgaggaagatcaagattcattctgctgaagcaaagctccttgtcccgacgttcgttcattgatcctttggttatggactcttcaagtttgattttgcggttaataccattttggtaaaccattttacttttgtagttcaaattaaaatatccatatgtgaaattagatccaagagaaaatggcatgaaacataatttgatcgtcttctagttgttgtctttagctgctagtactagtgcataccgatgttcgtcttctacagattagttatcaccggtgttttgagcacctcaacttcatttgtttggtttaaatggacataatttcagggaactattccttccctgtcg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0262900, RefSeq:Os03g0262900

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os03g0262900&oldid=168967"