Difference between revisions of "Os10g0419200"
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==Labs working on this gene== | ==Labs working on this gene== | ||
National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China | National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China | ||
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Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom | Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom | ||
Revision as of 05:24, 16 May 2014
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Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China
Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom
References
[1] Changyin Wu, Changjun You, Caishun Li, Tuan Long, Guoxing Chen, Mary E. Byrne, and Qifa Zhang (2008). RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice. Proc. Natl. Acad. Sci. USA 105,12915 -12920.
Structured Information
| Gene Name |
Os10g0419200 |
|---|---|
| Description |
Zinc finger, C2H2-type domain containing protein |
| Version |
NM_001071151.1 GI:115482045 GeneID:4348644 |
| Length |
2849 bp |
| Definition |
Oryza sativa Japonica Group Os10g0419200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:15197103..15199951 |
| Sequence Coding Region |
15197103..15197850,15199375..15199798,15199894..15199951 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:15197103..15199951 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:15197103..15199951 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcggcggcgcaggagccgagagccaagaagaagaggagcctccccggcaacccagacccggaggcggaggtgatcgcgctgtcgccgcgggcgctggtggcgacgaaccgcttcgtctgcgaggtctgcaacaaggggttccagcgcgaccagaacctgcagctccaccgccgcggccacaacctcccctggaagctccgccaccgcgccgccgctgtctccgccgtgacgacagcggcgccggcgccgaggaagagggtgtacgtgtgcccggagccgacgtgcgtgcaccacgacccggctcgggcgctgggcgacctgaccgggatcaagaagcacttctcgcggaagcacggggagaagcggtggcggtgcgagcggtgcgggaagaggtacgccgtgcactccgactggaaggcgcacgtcaagaactgcggcacccgcgagtaccgctgcgactgcggcatcctcttctccaggaaggacagcctgctgacacacagggccttctgcgatgccctagctgaagagagtgcaaggcttcttgctgctgcaaacaacagcagcagcatcactactaccacctgcaacaacagcaacatcagcagcaacaacaacaacaacaacattaacagcattagcaatagcaataatcttctgatcaccagcagcagcagctcaccaccactgttcctgccattctccaccactcctgctgaaaaccctaaccctaatcagctcctgttcctgcaacaacaccaagcagctcaccaccagctgcttcttcctcagttccagcagccaccctcctcgccgccggcctacttcgatcacctcgcattcggcggcggcggcggcgtcatcaccggcagcagctgcaacgacgacaatagctcgatcgccggcgatgtcatggtggctgcaggtggtgacagtgtcagcttcgggcttacctcggaaggctccgtgaccatgcacgccggcgacgtcggacggcgccggctcactagggacttcctcggcgtcgatcacgacgccggcgaggtcgacgagctcgagcttgatgagctgccggctgatctgtccaccaccgccgccgcctgccagggttgcaacttcgccgccgccaccaccgccgcctgctgcgccaccgacttcaccaccggcagcaggcagtacctcggccggctgccgccggtgaacgagacgtggagccacaacttctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MAAAQEPRAKKKRSLPGNPDPEAEVIALSPRALVATNRFVCEVC NKGFQRDQNLQLHRRGHNLPWKLRHRAAAVSAVTTAAPAPRKRVYVCPEPTCVHHDPA RALGDLTGIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAHVKNCGTREYRCDCGILFS RKDSLLTHRAFCDALAEESARLLAAANNSSSITTTTCNNSNISSNNNNNNINSISNSN NLLITSSSSSPPLFLPFSTTPAENPNPNQLLFLQQHQAAHHQLLLPQFQQPPSSPPAY FDHLAFGGGGGVITGSSCNDDNSSIAGDVMVAAGGDSVSFGLTSEGSVTMHAGDVGRR RLTRDFLGVDHDAGEVDELELDELPADLSTTAAACQGCNFAAATTAACCATDFTTGSR QYLGRLPPVNETWSHNF</aaseq> |
| Gene Sequence |
<dnaseqindica>2102..2849#154..577#1..58#atggcggcggcgcaggagccgagagccaagaagaagaggagcctccccggcaacccaggtgagcgagaaactgcctagctcttcttcttcttcttcttgcttgatcgatctcatctcaattctgctgtctcgccatggtgttggatcgatcagacccggaggcggaggtgatcgcgctgtcgccgcgggcgctggtggcgacgaaccgcttcgtctgcgaggtctgcaacaaggggttccagcgcgaccagaacctgcagctccaccgccgcggccacaacctcccctggaagctccgccaccgcgccgccgctgtctccgccgtgacgacagcggcgccggcgccgaggaagagggtgtacgtgtgcccggagccgacgtgcgtgcaccacgacccggctcgggcgctgggcgacctgaccgggatcaagaagcacttctcgcggaagcacggggagaagcggtggcggtgcgagcggtgcgggaagaggtacgccgtgcactccgactggaaggcgcacgtcaagaactgcggcacccgcgagtaccgctgcgactgcggcatcctcttctccaggtccggccacccccacgctcgccgttaaacacacacctttgattactatttattactactccctccatgctctaatacaacggattttgacattttacttgcactatttaactattcgtcttatttaaatttttttggaattattatttattttatttgtgacttactttattattcaaaatctttaaacacaacttctcgttttttatatttgcacaaattttttttaataagacgagtggtcaaaactacaaataaaatatcaaaatctcttatattagaggagagcgagtagctcttaattaaacttctttgcatatgctattgcattaaaaaagaacatctctgaaaaaaaaaacatggatggacactgatcaactaccaactgttaattcatcactacttcgagaggttttgagtattttggcagtataataccttgatatatatcttccaatttcgaagctagtgttcttcttcctgttcttgctcttgtttcctagctagcccaggctttctgaacttttagtccgaagttaagcatatactctcactggatctggtgttttatgtgaatttcatctgaaaattctgcatttgcaaacgggctttttgaaggtttcaatatgtgcttgttattaatctctaatgcatacatggtgcttatcatgtacgtcacacacacacacacacacacacacacacacacacacatatatatataatcatactcgaaagttttatatttcaaatatgtttttgaaaacctgcaaatcctgcatgcagctagctagctagtccggggcctttttcaatggttgggcatgcatgtggccatgagatctccatcagaatttcaaagccatcttcatcatcatatctgcatttgcaggaggcattgatggaaacacttcatttatagataatttgctgctgcagtaggatcgctttcttgctcccttttcttgccacagttcctgcattagcaattgaaatttaaggaggcagtttcaaggagcagatatagatatatattggcttatagttagctatagctagcagctgggggaccccaagatacacaataattatgtacactaagtttacacatgtaattaattatctatgcaacactaccaaaaatattgatctcaagaagttaattaattaaacagacactaaaaatctctaacatttaccctgcttgtagctctaactagcatgtaaatccatgaacctgaacatccaatgatcacacacgcgcacaaaccttggaaaagaaactaagctaatcatacggcaaggagacctttcttcaccaaagttaaatgcaactttacatgcatgcatgcgttcatcactgatcatgtgcacatcatcactactgttaccctacaaaatttgggaaatcaaacataaataatcactaaaaaactctttcatctgatcaatccacagtcgtccttaattaaattaacagttgacaaaaatacaataattccaattaattgttcatgcctgcaggaaggacagcctgctgacacacagggccttctgcgatgccctagctgaagagagtgcaaggcttcttgctgctgcaaacaacagcagcagcatcactactaccacctgcaacaacagcaacatcagcagcaacaacaacaacaacaacattaacagcattagcaatagcaataatcttctgatcaccagcagcagcagctcaccaccactgttcctgccattctccaccactcctgctgaaaaccctaaccctaatcagctcctgttcctgcaacaacaccaagcagctcaccaccagctgcttcttcctcagttccagcagccaccctcctcgccgccggcctacttcgatcacctcgcattcggcggcggcggcggcgtcatcaccggcagcagctgcaacgacgacaatagctcgatcgccggcgatgtcatggtggctgcaggtggtgacagtgtcagcttcgggcttacctcggaaggctccgtgaccatgcacgccggcgacgtcggacggcgccggctcactagggacttcctcggcgtcgatcacgacgccggcgaggtcgacgagctcgagcttgatgagctgccggctgatctgtccaccaccgccgccgcctgccagggttgcaacttcgccgccgccaccaccgccgcctgctgcgccaccgacttcaccaccggcagcaggcagtacctcggccggctgccgccggtgaacgagacgtggagccacaacttctaa</dnaseqindica> |
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