Difference between revisions of "Os05g0156500"
Li150706345 (talk | contribs) (→Function) |
Li150706345 (talk | contribs) (→Expression) |
||
| Line 17: | Line 17: | ||
===Expression=== | ===Expression=== | ||
| − | + | Os05g0156500 (OsERdj3B) encodes a polypeptide with 347 | |
| + | amino acid residues, which contains an N-terminal J-domain, | ||
| + | a zinc finger motif, and a DnaJ C-terminal domain (CTD; | ||
| + | Supplementary Fig. S2 at JXB online). | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 09:16, 19 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
expression of an ERDJ3-like gene (Os05g0156500) that also functions with BiP as a co-chaperone to assist nascent protein folding was not different between the wild-type and transgenic seeds. Stt3a (Os04g0675500) and UDP-glucose transporter (Os06g0593100), the products of which are involved in a renewed association with calnexin and calreticulin, and the ERAD-related Derlin gene (Os03g0852200) were up-regulated in BiP1 OEmax and BiP1 KD transgenic seeds. Expression of the cell death marker gene, Hsr203j (Os01g0155000), was induced in both the over-expression and suppression lines.
Expression
Os05g0156500 (OsERdj3B) encodes a polypeptide with 347 amino acid residues, which contains an N-terminal J-domain, a zinc finger motif, and a DnaJ C-terminal domain (CTD; Supplementary Fig. S2 at JXB online).
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os05g0156500 |
|---|---|
| Description |
Similar to Apobec-1 binding protein 2 |
| Version |
NM_001061232.1 GI:115462194 GeneID:4337860 |
| Length |
1994 bp |
| Definition |
Oryza sativa Japonica Group Os05g0156500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:3283758..3285751 |
| Sequence Coding Region |
3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:3283758..3285751 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:3283758..3285751 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa</cdnaseq> |
| Protein Sequence |
<aaseq>ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT</aaseq> |
| Gene Sequence |
<dnaseqindica>3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc</dnaseqindica> |
| External Link(s) |
