Difference between revisions of "Os06g0110000"
Guojian Wei (talk | contribs) |
Guojian Wei (talk | contribs) |
||
| Line 7: | Line 7: | ||
===Mutation=== | ===Mutation=== | ||
| + | [[File:1.jpg|right|thumb|150px|''Figure 1．Phenotype of tillering dwarf mutants 6 and 10 weeks after the germination.(from reference <ref name="ref1" />).'']] | ||
To identify genes involved in the control of rice tillering, Ishikawa et al. analyzed d3, d7, d10, d14, d27 tillering dwarf mutants exhibit reduction of plant stature and an increase in tiller numbers, in the mutants, axillary meristems are normally established but the suppression of tiller bud activity is weakened[1]. All mutants exhibited a similar abnormal appearance from the early stage of development, we can the this phenomena from figure 1.Yan et al found that darkness-induced senescence or H2O2-induced cell death in the thisd leaf [as measured by chlorophyll degradation, membrane ion leakage and expression of senescence-associated genes(SAGs)] in a d3 rice mutant was dalayed compared to that in its reference line Shiokari[2], we can see the leaf senescence phenomenon from the figure 2.In addition,Yasuno et al.compare the phenotype of the d3rcn1 double mutant with each single mutant and parental rice cultivar‘‘Shiokari’’, The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants. The phenotypes of the 4 genotypes at heading time are shown in Figure 3.These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control[3]. | To identify genes involved in the control of rice tillering, Ishikawa et al. analyzed d3, d7, d10, d14, d27 tillering dwarf mutants exhibit reduction of plant stature and an increase in tiller numbers, in the mutants, axillary meristems are normally established but the suppression of tiller bud activity is weakened[1]. All mutants exhibited a similar abnormal appearance from the early stage of development, we can the this phenomena from figure 1.Yan et al found that darkness-induced senescence or H2O2-induced cell death in the thisd leaf [as measured by chlorophyll degradation, membrane ion leakage and expression of senescence-associated genes(SAGs)] in a d3 rice mutant was dalayed compared to that in its reference line Shiokari[2], we can see the leaf senescence phenomenon from the figure 2.In addition,Yasuno et al.compare the phenotype of the d3rcn1 double mutant with each single mutant and parental rice cultivar‘‘Shiokari’’, The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants. The phenotypes of the 4 genotypes at heading time are shown in Figure 3.These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control[3]. | ||
| − | [[File:Figure3.jpg|right|thumb| | + | [[File:Figure3.jpg|right|thumb|150px|Figure 3.phenotype of Shiokari, a new rcn1 mutant S-97-61, d3 mutant of near-isogenic line ID3, and d3rcn1 double mutant(DM) at heading time. S-97-61 was recovered fromM2 progeny derived from gamma-ray–irradiated Shiokari in the present study. DM was developed from progeny of a cross betweenID3 and S-97-61 in the present study. Vertical bar represents20 cm. <ref name="ref3" />.'']] |
===Expression=== | ===Expression=== | ||
Revision as of 09:51, 19 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
In the case of the rice plant, more tillering equates to more grain-bearing branches, hence a higher grain yield.The D3 gene plays an important role in the control of tiller bud dormancy to suppress bud activity, encoding an F-box leucine-trich-repeat protein orthologous to Arabidopsis MAX2/ORE9[1]. Besides, the d3 protein is also involved in darkness-induced senescence or H2O2-induced cell death in the plant leaves[2].
Mutation
To identify genes involved in the control of rice tillering, Ishikawa et al. analyzed d3, d7, d10, d14, d27 tillering dwarf mutants exhibit reduction of plant stature and an increase in tiller numbers, in the mutants, axillary meristems are normally established but the suppression of tiller bud activity is weakened[1]. All mutants exhibited a similar abnormal appearance from the early stage of development, we can the this phenomena from figure 1.Yan et al found that darkness-induced senescence or H2O2-induced cell death in the thisd leaf [as measured by chlorophyll degradation, membrane ion leakage and expression of senescence-associated genes(SAGs)] in a d3 rice mutant was dalayed compared to that in its reference line Shiokari[2], we can see the leaf senescence phenomenon from the figure 2.In addition,Yasuno et al.compare the phenotype of the d3rcn1 double mutant with each single mutant and parental rice cultivar‘‘Shiokari’’, The reduction in tillering by the rcn1 mutation was independent of the d3 genotype, and tillering number of d3rcn1 double mutant was between those of the d3 and rcn1 mutants. The phenotypes of the 4 genotypes at heading time are shown in Figure 3.These results demonstrated that the Rcn1 gene was not involved in the D3-associated pathway in tillering control[3].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
(1) Graduate School of Agriculture and Life Sciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657 Japan
(2)CREST, Japan Science and Technology Corporation, 4-1-8 Honcho, Kawaguchi, Saitama, 332-0012 Japan
(3) Research Institute for Bioresources, Okayama University,2-20-1Chuo, Kurashiki, Okayama, 710-0046 Japan
(4) Faculty of Agriculture, Hokkaido University, Sapporo, 060 Japan
(5) Department of Crop Science Obihiro University of Agriculture and Veterinary Medicine, Nishi 2-5 Inada-cho,Obihiro, Hokkaido, 080-8555 Japan
(6) Graduate School of Agriculture, Hokkaido University, Kita 9 Nishi 9, Kita-ku, Sapporo, Hokkaido, 060-8589 Japan
References
[1] Ishikawa S, Maekawa M, Arite T, Onishi K, Takamure I,Kyozuka J. Suppression of tiller bud activity in tillering dwarf mutants of rice[J]. Plant and Cell Physiology, 2005, 46(1): 79-86.
[2] Yan H, Saika H, Maekawa M, Takamure I, Tsutsumi N,Kyozuka J, Nakazono M. Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death[J]. Genes & genetic systems, 2007, 82(4): 361-366.
[3] Yasuno N, Yasui Y, Takamure I, Kato K. Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice [J]. Journal of heredity, 2007, 98(2): 169-172.
Structured Information
| Gene Name |
Os06g0110000 |
|---|---|
| Description |
Similar to DWARF3 (Fragment) |
| Version |
NM_001063114.1 GI:115465959 GeneID:4339885 |
| Length |
5774 bp |
| Definition |
Oryza sativa Japonica Group Os06g0110000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:579671..585444 |
| Sequence Coding Region |
579736..580004,582676..583426,583535..583624,584130..584208,584387..584493 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:579671..585444 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:579671..585444 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggtgatggagggcatgggcatggcggcggcgtgggcggcgggggacctgtgggtgctggcggcggcggtggtggccggcgtggtgctggtcgacgcggtggtgcggagggcgcacgactgggttcgcgtggcggcgctgggggcggagaggaggtcgaggttgccgccgggggagatggggtggccgatggtgggcagcatgtgggcgttcctccgcgccttcaagtccggcaaccccgacgccttcatcgcctccttcatccgacggtttgggcggacaggggtgtacaggacgttcatgttcagcagcccgacgatcctggcggtgacgccggaggcgtgcaagcaggtgctcatggacgacgagggcttcgtcaccggctggcccaaggccaccgtcaccctcatcggccccaaatccttcgtcaacatgtcctacgacgaccaccgccgcatccgcaagctcaccgccgcccccatcaacggcttcgacgccctcaccacctacctctccttcatcgaccagaccgtcgtcgcctccctccgccgctggtcctcgccggagtccggccaggtcgagttcctcaccgagctcaggcgcatgaccttcaagatcatcgtccagatcttcatgagcggcgccgacgacgccaccatggaggccctggagcggagctacaccgacctcaactacggcatgcgcgccatggccatcaacctccccggcttcgcctactaccgcgcgctcagggctcgccggaagctcgtgtccgtgctgcagggtgtgctcgacggccggagggccgccgccgccaagggcttcaaacgctccggggccatggacatgatggaccgcctcatcgaggccgaggacgaacgcggccgccgcctcgccgacgacgagatcgtcgacgtcctcatcatgtacctcaacgccggccacgagtcctccggccacatcaccatgtgggccaccgtcttcctccaggagaaccccgacatcttcgcaagagcaaaggctgagcaagaggagatcatgagaagcattccagcaacgcagaacggattaaccctcagggacttcaagaagatgcacttcctctcacaggttgtcgacgagacacttcgctgcgtcaacatctccttcgtgtccttccgtcaggccacaagagacatctttgtgaacggttatcttatccccaaggggtggaaggttcagctgtggtacagaagtgtgcacatggatgaccaagtttatcctgaccccaaaatgttcaacccttcaagatgggagggaccccctccgaaagccggaacattccttccatttggactgggagcaagactgtgccctggaaatgatcttgcaaagctggagatctctgtcttcctccatcattttctcctgggttacaagctgaagagggcaaatccaaagtgcagggtgagatatctgcctcatccccggcctgtggacaactgcttggcgacgatcaccaaagtttccgatgaacactaa</cdnaseq> |
| Protein Sequence |
<aaseq>MVMEGMGMAAAWAAGDLWVLAAAVVAGVVLVDAVVRRAHDWVRV AALGAERRSRLPPGEMGWPMVGSMWAFLRAFKSGNPDAFIASFIRRFGRTGVYRTFMF SSPTILAVTPEACKQVLMDDEGFVTGWPKATVTLIGPKSFVNMSYDDHRRIRKLTAAP INGFDALTTYLSFIDQTVVASLRRWSSPESGQVEFLTELRRMTFKIIVQIFMSGADDA TMEALERSYTDLNYGMRAMAINLPGFAYYRALRARRKLVSVLQGVLDGRRAAAAKGFK RSGAMDMMDRLIEAEDERGRRLADDEIVDVLIMYLNAGHESSGHITMWATVFLQENPD IFARAKAEQEEIMRSIPATQNGLTLRDFKKMHFLSQVVDETLRCVNISFVSFRQATRD IFVNGYLIPKGWKVQLWYRSVHMDDQVYPDPKMFNPSRWEGPPPKAGTFLPFGLGARL CPGNDLAKLEISVFLHHFLLGYKLKRANPKCRVRYLPHPRPVDNCLATITKVSDEH</aaseq> |
| Gene Sequence |
<dnaseqindica>66..334#3006..3756#3865..3954#4460..4538#4717..4823#4949..5070#5333..5435#actcgtctctgcgtgcgtttcgttccttcgttgcgttgcgttggttcatcgatagatcgttctcgatggtgatggagggcatgggcatggcggcggcgtgggcggcgggggacctgtgggtgctggcggcggcggtggtggccggcgtggtgctggtcgacgcggtggtgcggagggcgcacgactgggttcgcgtggcggcgctgggggcggagaggaggtcgaggttgccgccgggggagatggggtggccgatggtgggcagcatgtgggcgttcctccgcgccttcaagtccggcaaccccgacgccttcatcgcctccttcatccgacggtcagtactaacatactcccctcctcctgccacgtgtcactggtggggtccacaccaatgctgacttgtgggccccaccggtgatcgatccttctttttttttttttgctctctttttcatcatatatgcacgtatacatgcataaagaaagaagtgatcttaattattcattcatctcaagaaattaaagaatgagaacacacacatctgcagagtgatcttttgatgcaagtgtgatctttgaatctctttgatcgccgcaacttggatcgaatcccacatatataaacgcagaatttcaattggtggtgtgcgtgagagagagatttggttgggtttggtttggtttggctgaccctggaaatgaaacccatcgagatgttgttatgatcgggaatttaggggttgttcagattaatgatattttaattggtaaagttgttaaaaatgtatatctatttagttttttttataaaactttggtaaatatataagaaatcctgtcaaaacttggtaatattgtcaaattgtaaaaattttgacaatgccaaaatttggtaatgtttgttttagttataatctgaacagccccttaatatggatccatactccatttgatttcaataagattgtggatggatggacggatcatggatgggttgctttttaatttatgtaaacatcaaaagatgctccccttttgaatggtactactgctagtatgatatagcgttgttgcaatgcatgatccatctatcagaccctagcatcaaggcatggtacttctttttctttttcttttcttttctttttgcactaggatgctcttcttctaccttttcatcatcatacctgatatgctgccctgccctggcctgttgtcaaaacccataccgatgtgtttttctcgcagcaataaaaatatattatgccttttattttatttatttttcacctttatgaacttgcatgcatatcttcatatccttcaaaacggtcctgttaaatattcatgttgatatgtctgaatcattgaccaaacacactcctgaaaagaaatcactagctaataagtatagctattactcctagaaaaccccatcctgttgtaaaaacagcaaaccatgggatatttgatggctttatgccatgtactattctgctgagtgatgtctaagcatttttggctcagattaggaattgtcggcacagctttatttgtacaagaattgacagcaattgatgctaatgtggtaggctcacgagaattcacagccagataaacgtacgagctagttttagccagtcattaggttgctgacaccgaaatgaaaattttgtggcacccactgtccatcatcagatttccaccactccagatatgcaacaacatattccaattttgccgaacaaagtttcaggacaaaaatctctttcggtgctttgctaaatagttaatacactgcttgctgatctcttgttgcatatatttactgttaagacaaattcggtgggcataactaggcatgcattagcttttgtttaatctgctatatatgccatgggaatcaatatcatatagctaggtgaaaacaaagcacccagtgctttccaaattagtatatgtgcgcttcaccctgattgtcgtttagtcaaacgtaatctcccacactcggattgatttggtgtccttttattgcttgtcttatgcactgattatcttaatcgctgttaaaaagatggttacacgtgttgttcatagattaatgccttctgttctgaaagatgcaacaatgtgttgcctttttgtcaagaaagataacacaaatgaggcacaagtagaaagattgttgcaagatcagttcttcagatttgcataggaaaaatgtttgtcatgtctgtaccattgtctgcatcacagcaaaatgacttttgtctcttcattcacttatctcagtatatttcttctgcatatatactagagtactagtttcagtaacaaagaactcatctgttaaaaaaaatcacttctttttgtgtgtgtgtgttcaagttgctctaatttatggcaactgaaacaagagactgatatcactggaacatcagcagcttaattcagaagttataacaaataaagttgtaatagtacattcatagcgaatgaagtgatggaatgaaacagaaatgctattaatcacaatcaaatcggaactaaaaatatgcaaacttatggtgatttggaagcatgggaatgcaaagaatggcaggtttgctctaatttctgacaactgaaacaagagttgacactgaaaacaagatcactgatcgttgtgatcacaaagtagtactccctccgtttcaaaatatttgacactgttgactttttagcatatgtttgaccgttcgtcttattcaaaaacttttgtgagatatgtaaaattatatgtccacataaaaatatatttaacaatgaatcaaatgataggaaaagaattaataattacttaaattttttaaataagacgaacggtcaaacatgtgtaaaaagtcaacgacgtcaaatatttcgaaacggagggagtagcaaatattgtagcacattgatagtaatcaaaagagaaacaaaaagaagaatgggaatttgatggtaagcatggaagaatggcacaggtttgggcggacaggggtgtacaggacgttcatgttcagcagcccgacgatcctggcggtgacgccggaggcgtgcaagcaggtgctcatggacgacgagggcttcgtcaccggctggcccaaggccaccgtcaccctcatcggccccaaatccttcgtcaacatgtcctacgacgaccaccgccgcatccgcaagctcaccgccgcccccatcaacggcttcgacgccctcaccacctacctctccttcatcgaccagaccgtcgtcgcctccctccgccgctggtcctcgccggagtccggccaggtcgagttcctcaccgagctcaggcgcatgaccttcaagatcatcgtccagatcttcatgagcggcgccgacgacgccaccatggaggccctggagcggagctacaccgacctcaactacggcatgcgcgccatggccatcaacctccccggcttcgcctactaccgcgcgctcagggctcgccggaagctcgtgtccgtgctgcagggtgtgctcgacggccggagggccgccgccgccaagggcttcaaacgctccggggccatggacatgatggaccgcctcatcgaggccgaggacgaacgcggccgccgcctcgccgacgacgagatcgtcgacgtcctcatcatgtacctcaacgccggccacgagtcctccggccacatcaccatgtgggccaccgtcttcctccaggagaaccccgacatcttcgcaagagcaaaggtcactcctcactctgcttctttttttttcctgtcactccaaatttggtttcaatcatctgaacttttgcattatttgaaattttgcatgatttgattttgagttcaggctgagcaagaggagatcatgagaagcattccagcaacgcagaacggattaaccctcagggacttcaagaagatgcacttcctctcacaggtataatataataatatatatagggaaactctattcatttcttaaagcgatatctccttgtttttttatgaaatttaaaaagtcattaacttttttaaaaaaattagtatgatatatcaacatatgatatgttacttcataaacatacatattcaaattcaacttatacaagtagaaacaaaaataacaaatttgatggatagaacgcgtaattcattgtcaaatttgttatttttgtttcgaattgtatatgtcgaattttaacttgcatgtttgtaaaaagatatatcatatattcatctaccttgacaaagttttttaaattttttgataacttttttgaacgccatgcacaaaacgagaggatgtccactcgagggacaaaaatccacttccatatatgcaaatgatttttaacacagtggaatatactactgctccagccgaattaccacagtaattactgcataactaatttgcacgctaatgatgatgaaatctgaaggttgtcgacgagacacttcgctgcgtcaacatctccttcgtgtccttccgtcaggccacaagagacatctttgtgaacggtgcgttttcacatagctgaaaatccatcccttaaagacatatcagaatcatcatcatctgaattctgattgatgttgttgtttctctagtgaaccacatcgactgattactactagtgcttgaaatgaaatgaaaatgaatgaatgaatgttatactaaccaagaagaacccagcaggttatcttatccccaaggggtggaaggttcagctgtggtacagaagtgtgcacatggatgaccaagtttatcctgaccccaaaatgttcaacccttcaagatgggaggtaaattaaattcaatccattcttctgcagtttttgtttcttcatcaaactagattaagctccatcgattctctgcctttttcagtgtgtttcaatggtcgatgtaattttttttgttctttcagggaccccctccgaaagccggaacattccttccatttggactgggagcaagactgtgccctggaaatgatcttgcaaagctggagatctctgtcttcctccatcattttctcctgggttacaagtaaacctcctctcaacatatttatgacaaaaaaaactactgttaactgaacatgattaattgtgaacagataaaagactaactgctgcacctctcttcttcttttcagtctttatttcttctactcttttcatttcattatcagtttacttgtagcttccaggatcaaaactgaaagttatgcctttcagaataccaactccaaaaaggataaaattgctttgttcaaagttcaaaactgaaagttgtctgctgtgtgcaggctgaagagggcaaatccaaagtgcagggtgagatatctgcctcatccccggcctgtggacaactgcttggcgacgatcaccaaagtttccgatgaacactaaaagttcagggattctttagctggaaccgaaaacagccaggctaggctacttgttcctctgggacaagtaaataaacatgattataaagtatatcacgtactctggaagaaaaaaaagagagagaagtgatgtgtattcgtcttgatatgctcgctttggtttcgcattgttcttgtttgtcctagcttaggacaaagattaaagtaaagcagttcgagttatactaacaagcttcctgaatatgggaaacacgcaagcattccccttcttttctatctatccacctcactgaatttggattgttctttatcagttaataaagatggcacgaaaagttgc</dnaseqindica> |
| External Link(s) |
