Difference between revisions of "Os06g0330100"
Jiangnanji (talk | contribs) (→Labs working on this gene) |
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===Expression=== | ===Expression=== | ||
| − | + | Pi - 25 in rice chromosome's markers between A7 and RG456, 6 figure distance is 1.7 cM and 1.5 cM respectively. | |
| + | The length of Pid3 cDNA is 2970 bp.Pid3 contains two exons and encoding a 923 amino acid composition of protein products, products containing the NBS LRR structure domain and MHD motif. Pid3Nip in the LRR structure domain. its transcription start site began to 2208th nucleotide, the CAG is replaced by the TAG. Japonica rice varieties Pid3 to pseudogenes are occurred after the process of indica japonica differentiation (Shang et al., 2009). | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 23:34, 20 May 2014
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Contents
Annotated Information
Function
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Expression
Pi - 25 in rice chromosome's markers between A7 and RG456, 6 figure distance is 1.7 cM and 1.5 cM respectively. The length of Pid3 cDNA is 2970 bp.Pid3 contains two exons and encoding a 923 amino acid composition of protein products, products containing the NBS LRR structure domain and MHD motif. Pid3Nip in the LRR structure domain. its transcription start site began to 2208th nucleotide, the CAG is replaced by the TAG. Japonica rice varieties Pid3 to pseudogenes are occurred after the process of indica japonica differentiation (Shang et al., 2009).
Evolution
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Labs working on this gene
Lihuang Zhu personal homepage:http://sourcedb.cas.cn/sourcedb_genetics_cas/yw/zjrc/pgr/200907/t20090721_2130981.html Jianli Wu personal home page:http://www.researchgate.net/profile/Jianli_Wu
References
1. Jie Chen;Yongfeng Shi;Wenzheng Liu;Rongyao Chai;Yaping Fu;Jieyun Zhuang;Jianli Wu
A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae Journal of genetics and genomics, 2011, 38(5): 209-216
2. Junjun Shang;Yong Tao;Xuewei Chen;Yan Zou;Cailin Lei;Jing Wang;Xiaobing Li;Xianfeng Zhao;Meijun Zhang;Zhike Lu;Jichen Xu;Zhukuan Cheng;Jianmin Wan;Lihuang Zhu
Identification of a New Rice Blast Resistance Gene, Pid3, by Genomewide Comparison of Paired Nucleotide-Binding Site–Leucine-Rich Repeat Genes and Their Pseudogene Alleles Between the Two Sequenced Rice Genomes Genetics, 2009, 182(4): 1303-1311
3. J.-L. Wu;Y.-Y. Fan;D.-B. Li;K.-L. Zheng;H. Leung and J.-Y. Zhuang
Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates Theoretical and Applied Genetics, 2005, 111(1): 50-56
4. 吴建利; 柴荣耀; 樊叶杨; 李德葆; 郑康乐; Hei LEUNG; 庄杰云
抗稻瘟病水稻材料谷梅2号中主效抗稻瘟病基因的成簇分布 中国水稻科学, 2004, 18(6): 567-569
5. Jie-Yun Zhuang;Wen-Bin Ma;Jian-Li Wu;Rong-Yao Chai;Jun Lu;Ye-Yang Fan;Min-Zhong Jin;Hei Leung & Kang-Le Zheng
Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice Euphytica, 2002, 128(3): 363-370
6. Zhuang-J-Y, Wu-J-L, Fan-Y-Y, Rao-Z-M, Zheng-K-L
Genetic drag between a blast resistance gene and QTL conditioning yield trait detected in a recombinant inbred line population in rice Rice Genetics Newsletters, 2001, 18(0): 69-70
7. 吴建利; 庄杰云; 柴荣耀; 樊叶杨; 金敏忠; 李德葆; 郑康乐
水稻抗穗瘟基因的分子定位 植物病理学报, 2000, 30(2): 111-115
8. Wu-J-L, Zhuang-J-Y, Fan-Y-Y, Li-D-B, Leung-H, Zheng-K-L
Effectiveness of a resistance gene from Gumei 2 against leaf and neck blast under field conditions in China Rice Genetics Newsletters, 1999, 16(0): 90-92
9. Zhuang-J-Y;Wu-J-L;Chai-R-Y;Fan-Y-Y;Jin-M-Z;Leung-H;Zheng-K-L
Rapid identification of resistance gene analogs linked to two blast resistance genes in rice Rice Genetics Newsletters, 1998, 15(): 125-127
10. Zhuang-J Y, Chai-R Y, Ma-W, B Lu-J, Jin-M Z, Zheng-K-L
Genetic analysis of the blast resistance at vegetative and reproductive stages in rice Rice Genetics Newsletters, 1997, 14(0): 62-64
Structured Information
| Gene Name |
Os06g0330100 |
|---|---|
| Description |
Disease resistance protein family protein |
| Version |
NM_001064074.2 GI:297605748 GeneID:4340920 |
| Length |
2775 bp |
| Definition |
Oryza sativa Japonica Group Os06g0330100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:13123254..13126028 |
| Sequence Coding Region |
13123254..13123817,13123893..13126028 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:13123254..13126028 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:13123254..13126028 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcggagggtgttgtgggctcactaatcgtcaagcttggggatgccctggcgagtgaagcagtggaggtcgccaagtccttgcttgggctagagggatctgctctgaagcgcctcttttctgagatccgggaggtgaagggggagctggagagcatccatgccttcttgcaggcagccgagcggttcaaggacgccgacgagacaacctccgcgttcgtcaagcaggtgaggagcctcgccctgagcatcgaggacgtagtcgatgagttcacctacgagctgggggaaggagacggccggatggggatggcagtggcactcaagaggatgtgcaagatgggcacatggtctcgcctggctggcaatctgcaggacatcaaggtcaacctgaaaaacgctgccgagaggaggattaggtatgatctgaagggcgtcgagagaggcgcgaaatcgatggcgggaaggaggagctcaaactggagatctgactctgtactcttcaagagggaggatgagcttgttggtatcgagaagaagagggatttgctgatgaaatgggtgaaagatgaggagcagcgccgcatggtggtcagtgtgtggggaatgagtggaatcggcaagacggcactggttgctaatgtttacaatgctatcaaggctgactttgacacctgtgcttggatcactgtgtctcagagctacgaggctgacgatttgcttaggcgaactgctcaagagtttcgcaagaatgatcggaagaaagacttcccaattgacgttgatatcacaaattacagaggcttggtcgaaaccacccgctcttacctggagaacaaaaggtatgtccttgtcctagatgatgtatggaatgcaaatgtttggttcgatagcaaagatgcatttgaagatggcaatattggccgaataattcttacatcaaggaattatgatgtggcgttacttgcgcatgaaacccatataattaatttgcagccgttggagaaacaccatgcgtgggatctgttctgtaaagaggcattttggaagaatgagataaggaattgtccgccggagttgcagccctgggctaataattttgttgacaagtgcaatggcttgccaatcgcaattgtgtgcattggacgccttctgtcatttcaagggtcaacttattcagactgggaaaaggtgtacaaaaatcttgagatgcaactaacaaacaactctatcatggacatgatgaacattatcttgaagattagtttggaagatctaccgcacaacattaagaactgcttcctttattgctccatgtttcctgaaaattatgtgatgaagaggaagtccctagtacgactctgggttgctgaaggatttattgaagaaactgagcatagaacacttgaggaagtggcagagcattacttgactgaacttgtgaaccgatgtcttctgttgctggtgaagagaaatgaggctggacatgttcatgaagtccaaatgcacgatatcctccgtgttttggctctttccaaggctcatgaacaaaatttttgcattgtcgttaaccactcgaggagtacacatcttattggagaagcacgccgtttatcaattcagagaggggattttgcacaacttgcagaccatgcaccacatcttcgatccttgctgcttttccaaagttcacccaatgtcagttcgcttcagtcattaccaaagtctatgaagttgttgtctgttttggatctaactgatagttcagttgataggctgccaaaggaagtgtttggcttgttcaacttgcgttttctgggtctcaggcgtactaaaatctccaagcttccaagctccattggaaggctaaaaattctgctggtgttggacgcttggaagtgtaaaattgtaaagcttccattggcgattacaaaacttcaaaagctaacacatcttattgtaacttcgaaagcagtcgttgtttctaagcaatttgttccttcttttgatgtgccagcacctttgcgtatctgctccatgacaacccttcagacattactactcatggaagctagttctcaaatggttcatcacctaggctctcttgtggagttaagaacctttcgtatcagcaaggcagacagtagtcaagaagtgctgcatcttgaatcacttaaacctcctcctctacttcagaaacttttcttgcaaggtacattatctcatgaatcattacctcatttcgtgtctgtaagcaatctgaataacctcacgtttctacgtcttgctgggtcaagaattgacgaaaatgcattccttaatcttgagggattacagcagttggtaaagctacagctttatgatgcatatgatggaatgaatatatacttccatgagaactcatttccaaagctcagaatactgaaaatatggggtgccccacacctgaatgaaattaagatgacaaaaggagctgtggcaagcctaacagatctgaagttcctgctctgtccaaacctgaagcagttgccttgcggtattgaacatgtgaggactcttgaggagctcactctggatcatacagcagaagagcttgtggatagaatccgacagaaaaaagagcgaatgatttgtgacgtccagagagtttatgttgggttcatcagaaatggtgtgttggctgcagaaaggattcaataa</cdnaseq> |
| Protein Sequence |
<aaseq>MAEGVVGSLIVKLGDALASEAVEVAKSLLGLEGSALKRLFSEIR EVKGELESIHAFLQAAERFKDADETTSAFVKQVRSLALSIEDVVDEFTYELGEGDGRM GMAVALKRMCKMGTWSRLAGNLQDIKVNLKNAAERRIRYDLKGVERGAKSMAGRRSSN WRSDSVLFKREDELVGIEKKRDLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNA IKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSY LENKRYVLVLDDVWNANVWFDSKDAFEDGNIGRIILTSRNYDVALLAHETHIINLQPL EKHHAWDLFCKEAFWKNEIRNCPPELQPWANNFVDKCNGLPIAIVCIGRLLSFQGSTY SDWEKVYKNLEMQLTNNSIMDMMNIILKISLEDLPHNIKNCFLYCSMFPENYVMKRKS LVRLWVAEGFIEETEHRTLEEVAEHYLTELVNRCLLLLVKRNEAGHVHEVQMHDILRV LALSKAHEQNFCIVVNHSRSTHLIGEARRLSIQRGDFAQLADHAPHLRSLLLFQSSPN VSSLQSLPKSMKLLSVLDLTDSSVDRLPKEVFGLFNLRFLGLRRTKISKLPSSIGRLK ILLVLDAWKCKIVKLPLAITKLQKLTHLIVTSKAVVVSKQFVPSFDVPAPLRICSMTT LQTLLLMEASSQMVHHLGSLVELRTFRISKADSSQEVLHLESLKPPPLLQKLFLQGTL SHESLPHFVSVSNLNNLTFLRLAGSRIDENAFLNLEGLQQLVKLQLYDAYDGMNIYFH ENSFPKLRILKIWGAPHLNEIKMTKGAVASLTDLKFLLCPNLKQLPCGIEHVRTLEEL TLDHTAEELVDRIRQKKERMICDVQRVYVGFIRNGVLAAERIQ</aaseq> |
| Gene Sequence |
<dnaseqindica>2212..2775#1..2136#atggcggagggtgttgtgggctcactaatcgtcaagcttggggatgccctggcgagtgaagcagtggaggtcgccaagtccttgcttgggctagagggatctgctctgaagcgcctcttttctgagatccgggaggtgaagggggagctggagagcatccatgccttcttgcaggcagccgagcggttcaaggacgccgacgagacaacctccgcgttcgtcaagcaggtgaggagcctcgccctgagcatcgaggacgtagtcgatgagttcacctacgagctgggggaaggagacggccggatggggatggcagtggcactcaagaggatgtgcaagatgggcacatggtctcgcctggctggcaatctgcaggacatcaaggtcaacctgaaaaacgctgccgagaggaggattaggtatgatctgaagggcgtcgagagaggcgcgaaatcgatggcgggaaggaggagctcaaactggagatctgactctgtactcttcaagagggaggatgagcttgttggtatcgagaagaagagggatttgctgatgaaatgggtgaaagatgaggagcagcgccgcatggtggtcagtgtgtggggaatgagtggaatcggcaagacggcactggttgctaatgtttacaatgctatcaaggctgactttgacacctgtgcttggatcactgtgtctcagagctacgaggctgacgatttgcttaggcgaactgctcaagagtttcgcaagaatgatcggaagaaagacttcccaattgacgttgatatcacaaattacagaggcttggtcgaaaccacccgctcttacctggagaacaaaaggtatgtccttgtcctagatgatgtatggaatgcaaatgtttggttcgatagcaaagatgcatttgaagatggcaatattggccgaataattcttacatcaaggaattatgatgtggcgttacttgcgcatgaaacccatataattaatttgcagccgttggagaaacaccatgcgtgggatctgttctgtaaagaggcattttggaagaatgagataaggaattgtccgccggagttgcagccctgggctaataattttgttgacaagtgcaatggcttgccaatcgcaattgtgtgcattggacgccttctgtcatttcaagggtcaacttattcagactgggaaaaggtgtacaaaaatcttgagatgcaactaacaaacaactctatcatggacatgatgaacattatcttgaagattagtttggaagatctaccgcacaacattaagaactgcttcctttattgctccatgtttcctgaaaattatgtgatgaagaggaagtccctagtacgactctgggttgctgaaggatttattgaagaaactgagcatagaacacttgaggaagtggcagagcattacttgactgaacttgtgaaccgatgtcttctgttgctggtgaagagaaatgaggctggacatgttcatgaagtccaaatgcacgatatcctccgtgttttggctctttccaaggctcatgaacaaaatttttgcattgtcgttaaccactcgaggagtacacatcttattggagaagcacgccgtttatcaattcagagaggggattttgcacaacttgcagaccatgcaccacatcttcgatccttgctgcttttccaaagttcacccaatgtcagttcgcttcagtcattaccaaagtctatgaagttgttgtctgttttggatctaactgatagttcagttgataggctgccaaaggaagtgtttggcttgttcaacttgcgttttctgggtctcaggcgtactaaaatctccaagcttccaagctccattggaaggctaaaaattctgctggtgttggacgcttggaagtgtaaaattgtaaagcttccattggcgattacaaaacttcaaaagctaacacatcttattgtaacttcgaaagcagtcgttgtttctaagcaatttgttccttcttttgatgtgccagcacctttgcgtatctgctccatgacaacccttcagacattactactcatggaagctagttctcaaatggttcatcacctaggctctcttgtggagttaagaacctttcgtatcagcaaggtgcgaagttgccattgtgagcagttgttcatggccatcactaatatgattcatcttacccgtcttgggatctaggcagacagtagtcaagaagtgctgcatcttgaatcacttaaacctcctcctctacttcagaaacttttcttgcaaggtacattatctcatgaatcattacctcatttcgtgtctgtaagcaatctgaataacctcacgtttctacgtcttgctgggtcaagaattgacgaaaatgcattccttaatcttgagggattacagcagttggtaaagctacagctttatgatgcatatgatggaatgaatatatacttccatgagaactcatttccaaagctcagaatactgaaaatatggggtgccccacacctgaatgaaattaagatgacaaaaggagctgtggcaagcctaacagatctgaagttcctgctctgtccaaacctgaagcagttgccttgcggtattgaacatgtgaggactcttgaggagctcactctggatcatacagcagaagagcttgtggatagaatccgacagaaaaaagagcgaatgatttgtgacgtccagagagtttatgttgggttcatcagaaatggtgtgttggctgcagaaaggattcaataa</dnaseqindica> |
| External Link(s) |
