Difference between revisions of "Os06g0583400"
Xiaoboy8888 (talk | contribs) (→Function) |
|||
| Line 2: | Line 2: | ||
==Annotated Information== | ==Annotated Information== | ||
| − | + | ||
| − | + | Histone deacetylases (HDAC) are important in plant gene expression. The expression of the gene OsHDAC702/HDAC1 is regulated by gene OsNAC6 and the gene OsNAC6 controls the growth of Rice seedlings roots. Over-expression of gene HDAC702/HDAC1 enhances root growth. | |
===Expression=== | ===Expression=== | ||
Revision as of 03:11, 21 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Histone deacetylases (HDAC) are important in plant gene expression. The expression of the gene OsHDAC702/HDAC1 is regulated by gene OsNAC6 and the gene OsNAC6 controls the growth of Rice seedlings roots. Over-expression of gene HDAC702/HDAC1 enhances root growth.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os06g0583400 |
|---|---|
| Description |
Similar to Histone deacetylase (Fragment) |
| Version |
NM_001064478.1 GI:115468687 GeneID:4341387 |
| Length |
5838 bp |
| Definition |
Oryza sativa Japonica Group Os06g0583400, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:23671362..23677199 |
| Sequence Coding Region |
23671839..23671946,23672074..23672154,23674571..23674634,23674728..23674819,23675373..23675603 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:23671362..23677199 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:23671362..23677199 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccgcaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcgggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggacgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcaatcaggggccacgcggaatgcgtgagattcatgaggtccttcaatgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcagttggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggctgagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagggtcgctgcagagaacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagacataa</cdnaseq> |
| Protein Sequence |
<aaseq>MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMK PHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIR ALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEAS GFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFP GTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGAD SLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGH ELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQ FQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAE TDAADQDGNRVAAENTKGTEPAADGVGSSKQTVPTDASAMAIDEPGSLKVEPDNSNKL QDQPSVHQKT</aaseq> |
| Gene Sequence |
<dnaseqindica>5254..5361#5046..5126#2566..2629#2381..2472#1597..1827#699..1139#84..623#aggagagggcaaagaggggaaaagaaaaaaaaaagagataaaaaaaaaatctcctcctcctcgccgccgccgccgccgccgccatggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccgcaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcgggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccaggttctctcgcgctggagagcctaataatcttgcggaattagggttttgggtgtgctaattgtttttgtattgcagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggacgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcaatcaggggccacgcggaatgcgtgagattcatgaggtccttcaatgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgaggtatgtatcaggggcatttcctggacatacatttctctgttgtttttgtttgaagagccttcactaatttattaactttaaagatgtatgaaatggcatagttcttctagcatccattttagcgccggcactatgcctgacatgtgtatgtagcaccttggacaactgttttgactaagcgactcacatctataagtacttatgtaaaaaaacctctgttaatcatttcaaactgttatagctattctaataagcacaactcactctgtgatgaactactatggattgtttgataattattgtacttttaatcactgaaatctaacagtatataaccaatgattgtctgagaattttatgaaatactttgagcttctaatgcttttagacgcatgtttcttttattgtaatcattattttcccgtatggtcttatttttctccttatgtttatgcagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcagttggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggctgagctacctgaggtgagtgagaaattattggcattatggttcttttttgtcctgtagaattcctcagcttcaaggataaaggagtataaggcgtctttctagtagttgctgtaaataataatatttcacaatttgtatgaattgtaaatgtcagctccggaaatatcaggaatgccaaattgacaggtggttagttatttttacatgattgaattttgaaaagttcgttttttttgttttatggtcaaaagctttatattatggtatggattatctatgcagattttttcatgcttgaagtaatctgtcatgtgtgctctaatgctggcacttcacattctgttaataatgttcaaatcgactttgaattttcaagctgaatgcatataatttaaattactaattcctagcataaggaccagttgtctgatgtgtctcagtttatagctttgaaactttacaagtgttgtaagatgcccagtggcatgcccatattgattatggatgtagtttcgaaagtgagaggaaggattttcgcttagttacatctatgtgtctcgtgcagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggtatttgtttctattcagttctgtaaccgttcaggggattctagcagttagaatcatatgacatggtctgatgtatatccttttgtcttttaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggtatttttctattaaaactcattgaagtaatgttatgtgctggtggtgacagttgttatggttaatgtgtgctcaaaggtgtgtaagcagctatactttctttcatgaatagtgtattctgctgtttgttcctttctgaatggttgttgcatcttcagagagcatattgatattaaatagccgtggactgcgaaagacatcaattgtgagttgatgtgttgtgatgttgaatattttgaattttaatccttgctgtagcgacagttctgaaatttatatactcaacttttcaaattaaacactaaggattggaagagctgaatcatcatagcgaagtaaaggacaactattatgatgtgactatacaacatgaaaatctaatttcatttttctggataatgcatcagtaccatattcgtttgtctgtatcatggtttcttttatggtcctcgggtgttggtattagtttttcaaccttagcccttaattttagttaaggttgtaagatgaatgaagctatataggatccagcattgtttgattcttgagagtcagatatttaattcagatttctcaaatgttctgatgcacatttgcacccggttgggacttatttctaatagtaattctatttgataagtgatttgcataggcttcaaaagtataatttgacagtttgaccattaacttctcttacaatatattgttagtggcaacaaaaccaattcatgtggaagcacttccgaatatgaatccactggtacaacttttgtacagtaaacttgcaaatataatttgactcattgttggttagagcttacaaaatttgacttttcaagtacatggacgagttagggcaaagggaataccttttctttgcaagtgcaaatctaatttatcaattcactgtggttatgtatatcaaataatttcctcggacttgtgaaagtttgatgctcccatgttctaccgttggtcttttgctgttggtgcagttctagtaaaagaattgttgcattgatcatttaacgtcttatagtgaatcctttattggcaccaaaaagtgttattccctcgtatggaatcaaataaaaaaattatccatctcgtcaatggtcttgtttggtagaacaccgcagcagctacagtggctgcagcgggacacgcttacagttctgcttgatgaccatccactgcggtgctgccgctgttctgctcgggctgtgctgtacagtaaaaagcgctgcatgttggcctacctagcaggcccaatgtgtgctcttccgggtgctacacaagcaccgaacaggatcattgcatctaggcaacaactgcctactgcctccacagagcaatgctgtctcggtggcaatgccaatatagaaaaaaaatgcatgacaaaataggaaaaaaaatattaccacacagcttaagtttttcaaacaccagagaaaaaaaaaagagtggtgtaatttcgaaatgtagttggacctgcaagatatggacaagctgtgaggaagtggttagctcagctcacacattggagaccgcaaagagggcatgtatccaaagattcggagattcatatcctgttcttccatgagccccaaatcagtgaagtttgtcatttcaggcctaccaggaggagctacacccagggtcgggcagcacaagtgccggcacacaaccctgctgcaacatgctctgcacaacttcatcgcccttaccatggttgacctcatctggaggaaggggcaccagagttgagtcacaatccaccatggcatggcgagcaggaggtggagtgtagcatgacggatgttaagtgcggtggcagctcaatacggtatccaaggctggtgggaggagcgagatttgtagagatgaggaaaaataatagataagagatgatgctgacaagtgggctcaggggcattttaccatttgcttacactactgacaaactctgctaatggcaatttttaacggtggcgtccgtagtggcttatgagggatgtgaaaaattgctcggtaatataagggaagcatctaatttagatgtcgaataaggaaacttgttaatttcagatgtcaaataaggaattttctcttcagatgtccttgttcttttctgattaagattcagattttaccttggtttctgttaggacgcttttcaaactactaaacggtgtgttcctgtgaaaactttctatatataagttgctttaaaatatcaaatatatccatttgtcaagtttgtaataattaaaatttaattaatcatgtgctaatggttttctcgttttacgtacgtcaacttaatcctcatcttcatcttcatcagtgaaaacttaatcttcaacttaatcattctctgttggtaatagtttgccttgttatttgtatgttgcaggatggtaatagggtcgctgcagagaacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttgtaagtgctcttttatttgtgcaaacttgtaatcttgcaaaaggtagacttgcacgtaagtgaactgtcatggatctctgtggtaacaacggctgccttttcatgttttgctctttgacaactgcagcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagacataatagttctctctaccttaaaacttagtaactgatgccatctatcatccattgattatattggagaaactcccaactttgaagcagagagttcatgccataccaaaagttatataccaaatttcgaatggtatgtacacctttcgaactggtggtgttttgtgcaatacatttatgccaggctgactattatgtggtatctattattagctttagtttaaccctgtctgctgtcgagcaatcggtatagtcgtgcaatatattctggatctatcaagcaatgtgagacggatgtcaaaccattggttgtgacttcagcaatgtatgtatatgtaagtatagggacaggcagcaggcgttactttggtggaagctacaagctttgtctctcttctcatccctaatacctacgtggggtgcgtctcgttgttgtttaggtattactgcattcttaaaagtgctcatttagggtgaaattct</dnaseqindica> |
| External Link(s) |
