Difference between revisions of "Os03g0340500"
(The current work confirms that these six genes comprise the entire rice Sus gene family.Sus is involved in numerous and diverse growth processes in the rice plant. This article mainly discuss SUS3, about its function, structure, expression, evolution) |
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==References== | ==References== | ||
Please input cited references here. | Please input cited references here. | ||
| + | National Agricultural Research Center, 1-2-1 Inada, Joetsu, Niigata 943-0193, Japan | ||
| + | CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601, Australia | ||
| + | College of Life Sciences, South China Agricultural University, Guangdong, China | ||
| + | Department of Biology, Hong Kong Baptist University, Hong Kong, China | ||
| + | Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Yangzhou University, | ||
==Structured Information== | ==Structured Information== | ||
Revision as of 12:53, 21 May 2014
Please input one-sentence summary here. The current work confirms that these six genes comprise the entire rice Sus gene family.Sus is involved in numerous and diverse growth processes in the rice plant. This article mainly discuss SUS3, about its function, structure, expression, evolution, and knowledge Extension.
Contents
Annotated Information
Function
Please input function information here. SUS4 plays an important role in the grain filling process.It was predominantly expressed in the caryopsis, with potential roles in carbon allocation within the filling grain.
Expression
Please input expression information here. The total abundance of the mRNAs for SUS4 genes as normalized to the constitutive polyubiquitin ( RUBIQ1) gene transcript level. The mRNA levels for SUS4 genes were highest in elongating sink organs such as roots,developing leaf blades and elongating uppermost internodes.The transcripts of SUS4 were most abundant in either the panicles at the grain filling stage of development or dry seeds respectively, and were absent from or expressed only at very low levels in the other tissues examined. Sus activity is suggested to be one of the key factors for the altered sugar metabolism in rice plants under submerged condition. The overall level of Sus activity remained relatively stable irrespective of germination conditions, but was higher in shoots of seedlings germinated under submerged condition compared to those germinated in the air at all the time points examined
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here. National Agricultural Research Center, 1-2-1 Inada, Joetsu, Niigata 943-0193, Japan CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601, Australia College of Life Sciences, South China Agricultural University, Guangdong, China Department of Biology, Hong Kong Baptist University, Hong Kong, China
Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Yangzhou University,
Structured Information
| Gene Name |
Os03g0340500 |
|---|---|
| Description |
Similar to Sucrose synthase (EC 2.4.1.13) |
| Version |
NM_001056599.1 GI:115452926 GeneID:4332788 |
| Length |
6189 bp |
| Definition |
Oryza sativa Japonica Group Os03g0340500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:12726466..12732654 |
| Sequence Coding Region |
12726747..12726785,12727387..12727525,12727621..12727865,12727959..12728280,12728556..12728780 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:12726466..12732654 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:12726466..12732654 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgggccccaagctcgaccgcaccccgagcatccgcgaccgcgtcgaggacaccctccacgcccaccgcaacgagctcgtcgccctcctctccaagtacgtgagccaggggaaggggatcctgcagccgcaccacatcctcgacgcgctcgacgaggtccagagctccggcggccgcgccctcgtcgagggccccttcctcgacgtcctccgctccgcccaggaggcgatcgtgctgccgccgttcgtggcgatcgcggtgcggccgcggccaggggtgtgggagtacgtccgcgtgaacgtgcacgagctcagcgtcgagcagctcaccgtgtcggagtacctccgcttcaaggaggagctcgtcgacggccagtacaacgatccgtacatacttgagcttgattttgagccattcaatgcctcggttccacgcccaaatcggtcatcatcaattggaaatggcgtgcagtttctcaacaggcacttgtcttcgatcatgttccggaacaaggattgcctggagcccctacttgatttccttcgtgggcatcggcataagggtcatgtcatgatgctaaatgacaggatacagagtctgggaagacttcagtctgtgctgacaaaagctgaggagcacttgtcgaaactcccagctgacacaccatactcacagttcgcatataagtttcaagaatggggattggagaagggttggggcgacacagctggatatgtcttggagatgatacatctccttctggatgtgcttcaagcgcctgatccatctactcttgagacgttcttgggaaggatccccatgatctttaatgtcgtcgtagtgtctcctcatggatattttggccaagccaatgtgttgggcttaccagatactggagggcagattgtctatatactggaccaagtccgtgcattggagaatgagatggttcttaggttaaagaaacaaggccttgattttacccctaaaattcttattgttactcggctgataccagaagcaaaagggacatcatgcaatcagcgtcttgagagaataagtgggacacaacatacttacatattacgagtgccattcagaaatgaaaatgggatactcaggaaatggatatcaagatttgatgtatggccctacctggagaaatttgcagaggatgctgctggtgagattgctgcagaactacaaggtactccagacttcataattggaaactacagtgacggtaatcttgttgcatcattgctatcttacaagatgggaattacccagtgcaatattgctcatgctttggaaaagactaaatatccagactcagacatatactggacgaagtacgatgagaagtaccatttctcctgtcagttcacagctgatataatcgccatgaacaatgctgattttataatcaccagcacataccaggaaattgctggcagcaaaaacacagttggacagtatgagagccatactgcatttactcttcctggtctgtatcgtattgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagacatgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcacttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttgctggctataacgatgtcaagaaatccaaggacagagaagaaatcgcagagattgagaagatgcatgaacttattaagacctataacttgtttgggcagttccgttggatctcggctcagacgaacagggctcgcaatggtgagctctatcgctacatagctgatactcatggtgccttcgtgcagccagctttctacgaagcattcggtctcactgttgtggaggccatgacatgtggactccctacttttgcaacagtccatggtggacctgccgagattatagagcacgggatctcagggttccacatagatccttatcatccggatcaagctgcaaatctgatagctgacttcttcgaacaatgtaaacaagaccccaaccattgggttgaagtttctaatagaggcctacaacgtatatatgagaaatatacatggaagatctactctgagaggttgatgacattggctggggtttatggcttctggaagtatgtctcgaagcttgagaggcgggagaccaggcgctatcttgagatgttctacatattgaagttccgtgaactggcgaagactgtacctcttgcagtagatgaggcacactga</cdnaseq> |
| Protein Sequence |
<aaseq>MSGPKLDRTPSIRDRVEDTLHAHRNELVALLSKYVSQGKGILQP HHILDALDEVQSSGGRALVEGPFLDVLRSAQEAIVLPPFVAIAVRPRPGVWEYVRVNV HELSVEQLTVSEYLRFKEELVDGQYNDPYILELDFEPFNASVPRPNRSSSIGNGVQFL NRHLSSIMFRNKDCLEPLLDFLRGHRHKGHVMMLNDRIQSLGRLQSVLTKAEEHLSKL PADTPYSQFAYKFQEWGLEKGWGDTAGYVLEMIHLLLDVLQAPDPSTLETFLGRIPMI FNVVVVSPHGYFGQANVLGLPDTGGQIVYILDQVRALENEMVLRLKKQGLDFTPKILI VTRLIPEAKGTSCNQRLERISGTQHTYILRVPFRNENGILRKWISRFDVWPYLEKFAE DAAGEIAAELQGTPDFIIGNYSDGNLVASLLSYKMGITQCNIAHALEKTKYPDSDIYW TKYDEKYHFSCQFTADIIAMNNADFIITSTYQEIAGSKNTVGQYESHTAFTLPGLYRI VHGIDVFDPKFNIVSPGADMSIYFPYTEKAKRLTSLHGSLENLISDPEQNDEHIGHLD DRSKPILFSMARLDRVKNITGLVEAYAKNARLRELVNLVVVAGYNDVKKSKDREEIAE IEKMHELIKTYNLFGQFRWISAQTNRARNGELYRYIADTHGAFVQPAFYEAFGLTVVE AMTCGLPTFATVHGGPAEIIEHGISGFHIDPYHPDQAANLIADFFEQCKQDPNHWVEV SNRGLQRIYEKYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRELA KTVPLAVDEAH</aaseq> |
| Gene Sequence |
<dnaseqindica>5870..5908#5130..5268#4790..5034#4375..4696#3875..4099#3529..3695#3336..3452#2718..2891#2413..2508#2040..2256#1495..1613#1210..1402#517..668#269..395#52..149#agtctcgcccaccgccaccgccactgcactccggtcgccggagcagccgccatgtcgggccccaagctcgaccgcaccccgagcatccgcgaccgcgtcgaggacaccctccacgcccaccgcaacgagctcgtcgccctcctctccaagtgagcgcccgccgcccgccagcaaccgatcgccgagccgcgccgcgcggcacagattttacttgctcgctgacgagttcttctccgggtgggtggcgtgcgtgcgtgcgtggcggcaggtacgtgagccaggggaaggggatcctgcagccgcaccacatcctcgacgcgctcgacgaggtccagagctccggcggccgcgccctcgtcgagggccccttcctcgacgtcctccgctccgcccaggtgcgccgtgcgcggggaagcactcgaaacgctggggccgcggcggcggcggcggcggctttttttttttggtggggctaatcctgagtaatctcgtgccgtttcgcgtggtttttcgcaggaggcgatcgtgctgccgccgttcgtggcgatcgcggtgcggccgcggccaggggtgtgggagtacgtccgcgtgaacgtgcacgagctcagcgtcgagcagctcaccgtgtcggagtacctccgcttcaaggaggagctcgtcgacggccagtatgcgctcctcccctgctcctgcactctgctttcgtttttcgttgctttcgtttttcgtgggaattttggtggttgggttcaggacgttatcctgtttaggggtttaggctctagtggctgtgccgggtttgggttctccgcatcccatgactgtttgctcgattcgctgtcgttgcaaaaggtgaatattagtgggatggttgattggttgtgtgcgggtaattgcctaattggtaagcgatgttgatgtgttgttttggatcggtaaaatttgtttgagtgagatattgataatagtttgtttcagtcaaaattcacaaccttcgtgactgtgttattacgttggtttatatatttgcaactgggtgctccaggttagtaatctaggagtactaataatgtagtagatctcaaagttagagctgcactttggtatatagacttacgggtttctgctggcagaatgattgaatttctgtttgtgaccctatctgggttctcttttcaccaaactcttaacctggattaagtatgtcaggtacaacgatccgtacatacttgagcttgattttgagccattcaatgcctcggttccacgcccaaatcggtcatcatcaattggaaatggcgtgcagtttctcaacaggcacttgtcttcgatcatgttccggaacaaggattgcctggagcccctacttgatttccttcgtgggcatcggcataagggtcatgtgagttttgtaactgttgtggaaattttaactgattcttttcttttgtaatttgttgtgtttgatcttaatttgggaatgctgtcacgtaggtcatgatgctaaatgacaggatacagagtctgggaagacttcagtctgtgctgacaaaagctgaggagcacttgtcgaaactcccagctgacacaccatactcacagttcgcatataagtaagtgactaagtgtagcccatcacattaaggcttgagtttctgcatagtttctatattgatagggggatgcacttacagacttttcaatttcagatgcactttgagctattctaaaaaatgtaaaacacctctctagaaatggtagtctctacgaaattaaagtaccgggctgttggcaagtataaactcaggttgaacttattggccatatgttgaccgatatgcttttgacatgtcctgcaatacgaaatcactgaaaaatgcttcccaatatacactgtatctatcatatattgttcacagatattatctaaaaaaaatatattgttcacagatttgttataaagtgcgtatttgatagtgcaaatcacattctggaagaatcgctttacacatggctatatttttacctataacattcaggtttcaagaatggggattggagaagggttggggcgacacagctggatatgtcttggagatgatacatctccttctggatgtgcttcaagcgcctgatccatctactcttgagacgttcttgggaaggatccccatgatctttaatgtcgtcgtagtgtctcctcatggatattttggccaagccaatgtgttgggcttaccagatactggagggcaggtaccagttgatgacaaaacaccaagatttttttgcttatcaggacacagtcaatgatctttagcttatcatggctataaagtgcctccctctcaccatttattgcctttaatcttttgaagcctcatgctgttgttttcctatgcatttgtccagattgtctatatactggaccaagtccgtgcattggagaatgagatggttcttaggttaaagaaacaaggccttgattttacccctaaaattcttattgtaagtgcatgtctatttccttcctcaaatgtggcatctgttaagtgtgatgttctattctatcagtagttcggtacatgctccagttaccttgttttatggaacattactattttttgcatgctcctgcacatggtgaacttgatttatcgttgtgattctttcacgtgaaaaagaagatcatctaagcatttttttatgtcgttgaggttactcggctgataccagaagcaaaagggacatcatgcaatcagcgtcttgagagaataagtgggacacaacatacttacatattacgagtgccattcagaaatgaaaatgggatactcaggaaatggatatcaagatttgatgtatggccctacctggagaaatttgcagaggtgaatatgcatcccttttttacttgtagagattcctcagatggccctgaactggttttcttcctctgctactgataattgaaggattacatttatcaagaacattgaaaaataatcaaattctgtttgttccattatgcactacaactgtcattttttgtttaaggaacttgagataaaaggactaaatccaagatgaagagggtaaatcacttatgtagaacagtaacaaaacaaaattcaattcagtatatgagaactttcgagggtgtgtttttgcatttgatttgtagtataaagagctttggtgacctttcctagttagaaccccgattctgtatatggcacttcctcctctgggtgtgaactttggagtactgttctcctcaactgaaacttcaattctatatttgagcactatagtaatgcgttcttgctttacaggatgctgctggtgagattgctgcagaactacaaggtactccagacttcataattggaaactacagtgacggtaatcttgttgcatcattgctatcttacaagatgggaattacccaggtaagtccttgttaactactattaaaagttcccaccacctttttggttgctgattatgccggtaaattgattgcagtgcaatattgctcatgctttggaaaagactaaatatccagactcagacatatactggacgaagtacgatgagaagtaccatttctcctgtcagttcacagctgatataatcgccatgaacaatgctgattttataatcaccagcacataccaggaaattgctggcaggttttattctcttctgccttgttggctgttaaagtttttttttcatcacgtttcattattcgattattgatttgttcacgcatagtagcatgtgaaatctggcgcacatgcctagtagttattcatggctattcttagggtatcctgattctgattcttaattttgtccttttcttcagcaaaaacacagttggacagtatgagagccatactgcatttactcttcctggtctgtatcgtattgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagacatgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcacttgaaaacttgatttctgacccagagcaaaatgacgaacatatgtgagtaatttctgttatcttacttctttttgcggcactttaaggttgagttttatgtcctttggtctcttctcattgcttgatgacagggttacttgctgtgtctttttctagattttatatatttaccaggttatcatgaatgggtgatactagaatgtacacaattagacacatattttagagatactaacaggatgtgtggaaaagtagatagttgtggcatgtaacatgtgactctcgttgtttctaatgatgataactactttttgtagtggacacctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttgctggctataacgatgtcaagaaatccaaggacagagaagaaatcgcagagattgagaagatgcatgaacttattaagacctataacttgtttgggcagttccgttggatctcggctcagacgaacagggctcgcaatggtgagctctatcgctacatagctgatactcatggtgccttcgtgcaggtatagtcatcagtttaacttacatgttatatccgaacatatggaatgggtggtacatgtcacctacatattgacttgccttaccaattacagccagctttctacgaagcattcggtctcactgttgtggaggccatgacatgtggactccctacttttgcaacagtccatggtggacctgccgagattatagagcacgggatctcagggttccacatagatccttatcatccggatcaagctgcaaatctgatagctgacttcttcgaacaatgtaaacaagaccccaaccattgggttgaagtttctaatagaggcctacaacgtatatatgagaagtcagtactgccaatcctgcgagtcctgtttttaacacaggtgtttttcatgcctcttgtgtagtatttctatttactgaccttgatgtttatagatatacatggaagatctactctgagaggttgatgacattggctggggtttatggcttctggaagtatgtctcgaagcttgagaggcgggagaccaggcgctatcttgagatgttctacatattgaagttccgtgaactggtatgcaaaaagttctgccctcttaggacccctttgaatcaaaggatttatgtaggaattttataggattcaaatactataggaaattttcctatttggccctttgattcaaaggattgaagctttccaaatcctatgaaattcctatggaatggcacattgcatgtggaggaaatttagcaagagctccaacctcttggaaaatttcctttgagtctatctctcttatccgattcctgcgtttttcctgcgctccaatcaaacgatcattccttttcctgtgttttgcaatcctctgttttacacttcaattcctatcagaatactgtgtttttcctattcctccgttttttctaccctgcgattcaaataggcccatagtacacaccgaaatactgtagttatcaaaagcacggccaatacatgccatttgctccgattagattgacatagtagtataggagtactaatccaactaaggtatatatatatatattttcccctggagagaatagaaggagcaatgctttctgatctgaaagaggatagtttatacgagtttcattttgattggctaataaatatttttccttttgtgcaggcgaagactgtacctcttgcagtagatgaggcacactgactgtaggtcctcgacgtgatgagatctgagggaaatcttcctgctgtcagtgggaatggtataggcaataatgtgcagcagatggccgcttggccgataataaaatggaatgtaacttgtgtgttcagcaagtgacgaacttgggagttgggactctgtaaaactagatttgtcaaacatcttgtctatgtacattaaaatagtttgatactcagtgcttcattgccattgtgttaatttgataatctgttaccttgtactattaagctaactgttttccc</dnaseqindica> 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