Difference between revisions of "Os04g0517100"
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===Expression=== | ===Expression=== | ||
| − | The OSmyb4 mRNA was strongly increased after a 4-h treatment at 4℃ in 3-day rice coleoptiles, otherwise, neither salt, drought, high tempture or anoxia , nor treatment with ABA and IAA affected OSmyb4 expression . Anaerobically germinated rice did not express OSmyb4. | + | The expression of the gene Osmyb4, detected at low level in coleoptiles grown for 3 days at 29°C，but OSmyb4 mRNA was strongly increased after a 4-h treatment at 4℃ in 3-day rice coleoptiles, otherwise, neither salt, drought, high tempture or anoxia , nor treatment with ABA and IAA affected OSmyb4 expression . Anaerobically germinated rice did not express OSmyb4. |
===Evolution=== | ===Evolution=== | ||
Revision as of 05:15, 24 May 2014
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Contents
Annotated Information
Function
The OSmyb4 cDNA of rice(cv.Arborio) was isolated from a coleoptile cDNA library[1].
Expression
The expression of the gene Osmyb4, detected at low level in coleoptiles grown for 3 days at 29°C，but OSmyb4 mRNA was strongly increased after a 4-h treatment at 4℃ in 3-day rice coleoptiles, otherwise, neither salt, drought, high tempture or anoxia , nor treatment with ABA and IAA affected OSmyb4 expression . Anaerobically germinated rice did not express OSmyb4.
Evolution
Please input evolution information here.
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os04g0517100 |
|---|---|
| Description |
Similar to Y19 protein |
| Version |
NM_001059853.1 GI:115459435 GeneID:4336407 |
| Length |
1819 bp |
| Definition |
Oryza sativa Japonica Group Os04g0517100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:26241584..26243402 |
| Sequence Coding Region |
26241917..26242427,26242974..26243103,26243192..26243324 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:26241584..26243402 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:26241584..26243402 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggggagggctccgtgctgcgagaagatggggctcaagaagggtccatggacgccggaggaggacaaggtcctcgtcgcccacatccagcgccacggccacggcaactggcgcgccctgcccaagcaagccgggctgctgcgttgcggcaagagctgccggctccggtggatcaactacctgcggccggacatcaagcggggcaacttctccaaggaggaggaggacaccatcatccatctccacgagctgcttggcaacaggtggtccgcaattgccgccaggttgcccgggaggacggacaacgagatcaagaacgtgtggcacacccacctcaagaagcgcctcgatgcgccggctcagggcggtcatgtcgcggcgagcggcggcaagaagcacaagaagccgaagagcgcgaagaagccagccgccgccgccgccgcgccgccggcgtcgcccgagcggtccgcctcgtcgtcggtgacggagtcctcgatggcctcgtcggtggcggaggagcacggcaacgccgggatcagctcggcgtccgcgtccgtgtgcgccaaggaggagagctccttcacctcggcttccgaggagttccagatcgacgacagcttctggtcggagacgctgtcgatgccgctggacgggtacgacgtgtccatggagcccggcgacgcgttcgtcgcgccgccatccgccgacgacatggactactggctcggagtgttcatggagtccggcgaagcgcaagacttgccgcagatctag</cdnaseq> |
| Protein Sequence |
<aaseq>MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQA GLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDN EIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSS VTESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEEFQIDDSFWSETLSMPLDG YDVSMEPGDAFVAPPSADDMDYWLGVFMESGEAQDLPQI</aaseq> |
| Gene Sequence |
<dnaseqindica>976..1486#300..429#79..211#cagccgcctcccttccaagaacacacaacgcaagaggagcagagcagttcagatcagagcagggaaggagcaagcacaatggggagggctccgtgctgcgagaagatggggctcaagaagggtccatggacgccggaggaggacaaggtcctcgtcgcccacatccagcgccacggccacggcaactggcgcgccctgcccaagcaagccggtgagtgacagcggctcgtgttcggttcaggtcgtgtacctttggcggcgccggtgaagcaaagctaaaatgggttttgatgtcgcagggctgctgcgttgcggcaagagctgccggctccggtggatcaactacctgcggccggacatcaagcggggcaacttctccaaggaggaggaggacaccatcatccatctccacgagctgcttggcaacaggtacacacgctgctctgctcctccttaattgcagacttatctgatctgatccccccaaatttcgctgctcctggtttggagcaatgattgttgcttgcttatgtgcttcaaatgctatgagagggaggtttattccttttttatttatttagttattattagttatttattaccattgtggaggggcatatactgatatgttatcctcctgggccacctgctctcgatgcaaatagagagaaaatatattgctagtcgtaggccacttttctgtagctaattacatcactgatgatgcgcgagatgtgctaaaagattccatcttgtttggctcttccggtgaccccccttgaattcagcgctgcaaaaacatgcgctttgcattaaacaaccgcatgtgatcccgacgagggaatcaaatcacgcgatgatagcaaagctctaaatcaaaatgaagtcatctgaaatagccaaacaattttttttttttgacaaaatgaaacatgaacttgggcactgatccgctctgaattctgtgctacgcaggtggtccgcaattgccgccaggttgcccgggaggacggacaacgagatcaagaacgtgtggcacacccacctcaagaagcgcctcgatgcgccggctcagggcggtcatgtcgcggcgagcggcggcaagaagcacaagaagccgaagagcgcgaagaagccagccgccgccgccgccgcgccgccggcgtcgcccgagcggtccgcctcgtcgtcggtgacggagtcctcgatggcctcgtcggtggcggaggagcacggcaacgccgggatcagctcggcgtccgcgtccgtgtgcgccaaggaggagagctccttcacctcggcttccgaggagttccagatcgacgacagcttctggtcggagacgctgtcgatgccgctggacgggtacgacgtgtccatggagcccggcgacgcgttcgtcgcgccgccatccgccgacgacatggactactggctcggagtgttcatggagtccggcgaagcgcaagacttgccgcagatctagagaaagagagagaattttaccgtttcttcggttaattgatttgttttttctctctctgccgccatcttgcaccggagggacatagctaacagacaagagtgtccatgagcgaatcatcaagcaggaagaacgcgaatcatgcgatgcgatgcgatgagatgcacccagtagctttgatagttaattttctttttttacctccttcctgtatgtatagaaacagaagagatcagtgatcgaaacctgagatcctttctcacaatgtgcaaactggatcatcagaaaacgggctctgcgtttctcatttgattaattaaattcaacttgcacgct</dnaseqindica> |
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