Difference between revisions of "Os01g0867300"
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==References== | ==References== | ||
| − | + | 1. Md. Amir Hossain;Yongjoo Lee;Jung-Il Cho;Chul-Hyun Ahn;Sang-Kyu Lee;Jong-Seong Jeon;Hun Kang;Choon-Hwan Lee;Gynheung An;Phun Bum Park | |
| + | The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice | ||
| + | Plant Molecular Biology, 2010, 72(4-5): 557-566 | ||
| + | 2. Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang | ||
| + | Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa | ||
| + | Journal of Shanghai University (English Edition), 2009, 13(2): 174-182 | ||
| + | 3. Aashima Nijhawan;Mukesh Jain;Akhilesh K. Tyagi;Jitendra P. Khurana | ||
| + | Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice | ||
| + | Plant Physiology, 2008, 146(2): 333-350 | ||
==Structured Information== | ==Structured Information== | ||
Revision as of 12:37, 24 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
bZIP transcription factor OsABF1 is an ABA response element combination factor, which can enhance signal transduction of abiotic stress in rice. The bZIP transcription factors are considered playing a role in stress signaling of plant.OsABF1 is a gene which as combination factor to response abscisic acid , and encoding bZIP transcription factors.Therefore,OsABF1 is involved in rice abiotic stress responses and ABA signaling.
Expression
OsABF1 expression in seeding shoot and root was induced by all kinds of abiotic stress such as oxygen deficit,salt,drought,oxidation,cold and ABA,but undetectable expression when untreated.OsABF1 is a nuclear protein, which can combine the ABA responsive elements(ABREs),and the N-terminal region is necessary for trans-activating report gene of downstream. Compared with the wide type, the homozygous for the T-DNA insertion mutant gene Osabf1-1 and Osabf1-2 are more sensitive to drought and salt treatment,in addition,some gene that upregulated ABA stress regulating responsive gene under ABA treatment was suppressed in Osabf1 mutant. Therefore,OsABF1 is involved in rice abiotic stress responses and ABA signaling.
Evolution
Please input evolution information here.
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Labs working on this gene
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References
1. Md. Amir Hossain;Yongjoo Lee;Jung-Il Cho;Chul-Hyun Ahn;Sang-Kyu Lee;Jong-Seong Jeon;Hun Kang;Choon-Hwan Lee;Gynheung An;Phun Bum Park
The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice Plant Molecular Biology, 2010, 72(4-5): 557-566
2. Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang
Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa Journal of Shanghai University (English Edition), 2009, 13(2): 174-182
3. Aashima Nijhawan;Mukesh Jain;Akhilesh K. Tyagi;Jitendra P. Khurana
Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice Plant Physiology, 2008, 146(2): 333-350
Structured Information
| Gene Name |
Os01g0867300 |
|---|---|
| Description |
Similar to OSE2-like protein (Fragment) |
| Version |
NM_001051448.1 GI:115441266 GeneID:4325078 |
| Length |
3398 bp |
| Definition |
Oryza sativa Japonica Group Os01g0867300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:39312554..39315951 |
| Sequence Coding Region |
39313018..39313098,39314010..39314039,39314794..39314865,39314961..39315578 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:39312554..39315951 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:39312554..39315951 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgatggcgtcgagggtgatggcgtcgtcgtcgccgtcgcacacggcatcggatctcgcgcggttcgcggcggggaggggtgggggcgggagcgcggggctggggtcgatgaacgtggaggagatcctccgcggcatctacgccgacatgccgacgccggcgctgcccctcgtcggcggtgacaggccgatgtcgccgctcccggcgccggatgtcgccgccgcgccgcggacggcggaggaggtctggaaggagataactggtgcgggcgtcgccgccgccgccggcggcgtggtgccccctgctgctgctgctgctgctgccccggccgtcgtcgctggcgctggcgctggcaccggcgcggagatgacgctggaggactttctggcgagggagggcgcggtgaaggaagacgaggctgtggtcaccgatccctcggcggccaaggggcaggtggtgatggggttcctgaacggggcagaggtcaccggaggcgtcaccggcggcaggagcaggaagaggcacctgatggatccgatggaccgcgccgcgatgcagcggcagaagcgaatgatcaaaaatcgcgagtcggcggcgaggtcacgggagaggaagcaggcctatattgctgagctcgagtcgctggtcacgcaactcgaggaggagaacgccaagatgttcaaagaacaggaggagcaacatcagaaacgacttaaagagctcaaggaaatggttgttccagtcatcattaggaaaacgtcagcacgagatcttagaagaacaaactcgatggagtggtag</cdnaseq> |
| Protein Sequence |
<aaseq>MMASRVMASSSPSHTASDLARFAAGRGGGGSAGLGSMNVEEILR GIYADMPTPALPLVGGDRPMSPLPAPDVAAAPRTAEEVWKEITGAGVAAAAGGVVPPA AAAAAAPAVVAGAGAGTGAEMTLEDFLAREGAVKEDEAVVTDPSAAKGQVVMGFLNGA EVTGGVTGGRSRKRHLMDPMDRAAMQRQKRMIKNRESAARSRERKQAYIAELESLVTQ LEEENAKMFKEQEEQHQKRLKELKEMVVPVIIRKTSARDLRRTNSMEW</aaseq> |
| Gene Sequence |
<dnaseqindica>2854..2934#1913..1942#1087..1158#374..991#attaacctctaaaccataaagtccccccgtctcatgtcgtctcatcactcacttataatcacccccatccacttaatcacgctctcaacgctgctgtgtcacgtcacgtcacgcgcggctccgtaataagaccaccaacctcctcctcctccctcccacgtttggagctctcgtctcgtctcgcggcctcgagccctcgaccaaccaaccacccgcttcttctctcccgtctcccgaaacctccgagagctcagaagaaaaaagaagaaaaaaaagagaaaaaaaaactggtggaaactggaaggtttgcggcggaaacgagggggagggatggtggcgaggagggcgtaggcggggggtgggggtgaggcggatgatggcgtcgagggtgatggcgtcgtcgtcgccgtcgcacacggcatcggatctcgcgcggttcgcggcggggaggggtgggggcgggagcgcggggctggggtcgatgaacgtggaggagatcctccgcggcatctacgccgacatgccgacgccggcgctgcccctcgtcggcggtgacaggccgatgtcgccgctcccggcgccggatgtcgccgccgcgccgcggacggcggaggaggtctggaaggagataactggtgcgggcgtcgccgccgccgccggcggcgtggtgccccctgctgctgctgctgctgctgccccggccgtcgtcgctggcgctggcgctggcaccggcgcggagatgacgctggaggactttctggcgagggagggcgcggtgaaggaagacgaggctgtggtcaccgatccctcggcggccaaggggcaggtggtgatggggttcctgaacggggcagaggtcaccggaggcgtcaccggcggcaggagcaggaagaggcacctgatggatccgatggaccgcgccgcgatgcagcggcagaagcgaatgatcaaaaatcgcgagtcggcggcgaggtcacgggagaggaagcaggtgggtgtggaaactgtgcatttttacaagctttcgttcgccctaggaatttgagttatactgagaaggctgacgtcttctttttgttggtgaaggcctatattgctgagctcgagtcgctggtcacgcaactcgaggaggagaacgccaagatgttcaaagaacaggtacttctccgagaccccgacatttctcgtgtgcttgtttgatgttggaaacttgaatgtggggattcgtgtgttgagaattgaaccgtgtctccattgtttattgagcttaaacttgcagaaatgtttctgttaaatctctaggtgagtaggcatgtgaccatgaacatgttagaactgcaacagagttgggctgtggagccaaaatgaattgcaagtagtattcgtttttgttagccatctgcttaggatgccatttgccgtggtaaattttttaaaggaaaatgcttcgcatacaacaatcatatactagtgcaccaagcagcacacgctgttcggctgttcggtacagcggccacgctacagccaattgctacaccaagcagcacagccgctgcactaagcttgctgccgcacagcgctgcatcaagcagccgaacacggcatatgcatattaaaactcatctcattcgctgcctttgatgtattctcgcttttccttcttggaaaaggtctccctataaaatttgtagtgtgtacagaagttgtctgaaagaagtgttattcactatactcaccttttgttcttgtctccatttcccctgtccattttaatttagaatttcatactgtgcctacacggttacggctggattgtgcatgacttgcttataactaatcaaggatggcataagttactcttcttggtcttctagcaatttccttacgataaactccctcgcatgtgtttcaggaggagcaacatcagaaacgacttaaagaggtaagctttgtaagatggtgttgcctttaattatctagtgctttagagcatttgtgttaagtgccatatcccaaaaaaaacttcacccacaacgcatgccctggaggggaaaaaagaacatcgtcttgtgaaaatcttgtaatcaatcctggatcagccttcatataggaacatacagtacagaacacaatactgggtaagtatacactggattattccgtattcgttggatatgatactccaaacaggagatgctttttagccttcccactagcctgcaccaagtggcttggcaaacaaacaataggtgatgctgacacctttcgatggcatcagcacaagtgcacaacacatgttgagttttgagattgtctacctcatccatttctttcttgggagcctgttcaactcattatagatgcattgcatgtatatatgtctgattaaaaaggcctgagcctgcagttccgtgcttttccaccacggcacagcttgccaggttgaagcagtatatagttataaattgtcttcttttgtcactatcagggaggttgggttgagagggagatgctttgtcaatttggttgtataagttgcatcgtaggcacagttgagcccacatcttgcttaggaacagttcgcctccatttggctttgcatactatagttgtcttccatttagttttcagccagcataggatttcagatttcttctaattttgcctttcctgcctggattgtatatattgatttatatatatcttgacgacctgcctctcatcgttggtgcagaggccgaattccattatccaaaaaaaaaaaaaaatcttttgcaaatctatatgctcattaactcattcattaggttcatcgatcatgcttatctgaagaaatctgtttactttatgcagctcaaggaaatggttgttccagtcatcattaggaaaacgtcagcacgagatcttagaagaacaaactcgatggagtggtagacgtgagccaagctcagttgccatccccatacagtttatgtagcatttgctcctgttttgtcaattcttctgttttatcggcagtagcctagttgcggtgaatacatgagtatttaggtgacacgaagcttaaatgtctggagtcatatgctacggaggggagagtgcgtacgagctacaaaagcaatcatatgtgtagggaggggagagtgcatatgagctataaaagccatgttccaatttgtcgcgggagtgtattctgtcccatttgttgtctgtttcattttcagtttaacaattaggtgtagtgaggaagaattacgagtactgagtagtactaaacagggtgactctaggtatgctgatatgatatctagttaggcattacttctgattctctgtttggtgccacgactcaaattgtctgtacatacacgttggatgtaaagtcacattatcaagtg</dnaseqindica> |
| External Link(s) |
