Difference between revisions of "Os04g0301500"
Mojingkitty (talk | contribs) (→Function) |
Mojingkitty (talk | contribs) (→Expression) |
||
| Line 8: | Line 8: | ||
===Expression=== | ===Expression=== | ||
Please input expression information here. | Please input expression information here. | ||
| + | The expression of RERJ1 after wounding is regulated in a JA-dependent manner in rice. RERJ1 expression was induced only at the region of injury after wounding, whereas expression was induced in the entire leaf after drought. According to JA measurements of stressed leaves, high accumulation of endogenous JA was only detected around the wound site in a rice leaves, whereas the drought treatment led to uniform accumulation of JA in the entire leaf, suggesting that RERJ1will be a useful marker gene for studies on localization of JA in rice. | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 08:26, 28 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here. RERJ1, a JA-inducible transcription factor in rice, is up-regulated by exposure to wounding and drought stress.
Expression
Please input expression information here. The expression of RERJ1 after wounding is regulated in a JA-dependent manner in rice. RERJ1 expression was induced only at the region of injury after wounding, whereas expression was induced in the entire leaf after drought. According to JA measurements of stressed leaves, high accumulation of endogenous JA was only detected around the wound site in a rice leaves, whereas the drought treatment led to uniform accumulation of JA in the entire leaf, suggesting that RERJ1will be a useful marker gene for studies on localization of JA in rice.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os04g0301500 |
|---|---|
| Description |
Basic helix-loop-helix dimerisation region bHLH domain containing protein |
| Version |
NM_001058941.1 GI:115457611 GeneID:4335417 |
| Length |
2402 bp |
| Definition |
Oryza sativa Japonica Group Os04g0301500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:13515243..13517644 |
| Sequence Coding Region |
13515513..13515611,13516595..13517065,13517150..13517429,13517497..13517579 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:13515243..13517644 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:13515243..13517644 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggacgccgagatggccatgggcgagagcttcgcctactactgggagacgcagcgctaccttgagtccgaggagctcgacagcatgtacctgccgacgcaggatgactccaactacgagtcgagctcgccggacgggtcgcactcgtcgtcggcgccggcgccggcggccgtgggcggggacgcagccgccgcggtggcgggtagcggtggcgggatgacgacgatgatgatgggcggcggcggcggcggtggcgacgacgccggtggcgcgaacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcgctccgcagtgtcgtgcccaacatcaccaagatggacaaggcgtcgatcatcaaggacgcgatcgagtacatccagcgcctgcaggcggaggagcagcagatgctccgggaggtcgccgcgctcgagtccgccgccgcggcgagcgccgccccggccgcggcgaacccgttcgccggcctcggcgccgacgaggaacacgagtacggccaccaccacccctcgtcgtcgtcggagcggacgaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggcggcgccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgacagggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgccgcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggctgcctcatgcacaccctcttcgtcgaggtagatcacatggatagtgtccaaatgaagcagatggtggaggctgctctctcccagcttgtggcgaccggcagtccgttgagctccatgagctattag</cdnaseq> |
| Protein Sequence |
<aaseq>MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSP DGSHSSSAPAPAAVGGDAAAAVAGSGGGMTTMMMGGGGGGGDDAGGANKNILMERDRR RKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREVAALESAAAASA APAAANPFAGLGADEEHEYGHHHPSSSSERTKKVKRALSVSSISDALLAAAAPAPPVE IQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGCLMHTLF VEVDHMDSVQMKQMVEAALSQLVATGSPLSSMSY</aaseq> |
| Gene Sequence |
<dnaseqindica>2034..2132#580..1050#216..495#66..148#gtcggagagagacacaagccaacctcgaactcgaagcagagcaaacgcgaagcagagcaagcgccatggacgccgagatggccatgggcgagagcttcgcctactactgggagacgcagcgctaccttgagtccgaggagctcgacaggtgcgcctccgcctcgccgccgccgccgatccgccattgttgttgctgacatggtgtttggttgcagcatgtacctgccgacgcaggatgactccaactacgagtcgagctcgccggacgggtcgcactcgtcgtcggcgccggcgccggcggccgtgggcggggacgcagccgccgcggtggcgggtagcggtggcgggatgacgacgatgatgatgggcggcggcggcggcggtggcgacgacgccggtggcgcgaacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcgctccgcagtgtcgtgcccaacatcaccaaggtaagggagagaggagtagaggtgttcgtccatggcggcgacggcgacattgctgactgactgctcgtcggtggttgggcgcagatggacaaggcgtcgatcatcaaggacgcgatcgagtacatccagcgcctgcaggcggaggagcagcagatgctccgggaggtcgccgcgctcgagtccgccgccgcggcgagcgccgccccggccgcggcgaacccgttcgccggcctcggcgccgacgaggaacacgagtacggccaccaccacccctcgtcgtcgtcggagcggacgaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggcggcgccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgacagggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgccgcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggctgcctcatgcacaccctcttcgtcgaggtataatacaatctccatctccattgctgacgtcacgcacgatcactgagctcctcttcctttccttaggtttgaccttccaagtttgactttgaccgttcacacgcagtactacattttacttccatttttaggtagaaaaataacgttgcgatcacacgctgctccctttgcggcgtcagtatgttaggccaatcaaatcctcaccaatcctaaagcaaccgtcccgaatctcaaagcatcagaaaatccccttctccccgctttacgaatccacctgattcttcttcttctgttcttcgattgcaaaaagcgattgaaaaccacatgggattaatcgggtgcgcacgagggagaaatcgaacaattcgatggatggatggatcgcgcacgtgcttcagataataattaatgaattaattttttgggggacaaacgggagcactacatctacatgggcgtcacatcacgtgcgtgttttggttgggggaagccatggaaaacgattggcacgtgttcgattgcacgggagatgatttttttcccctcgtttttttatttgttgtgacgttaaattccacacttttctttaagctgatttgattacagatgtgaagacaacagtttttgggggatgttctgtgttttgtcctcttctagaaattaggtgtttgatacacattattgaggccgagttagttttttttttttggggattgaggctgagttagtttgttgacttccacgtgcatgcacgtttcttgaactgttaaatttttaaaagaaattatacaaaaattgttttaaataaatcataacaatatattttttaagatttttaaaatatatttaattaatcatgtgttaatccattactctattttacgtgcggagggaaggggttcgcaacctcttcaaaagaacaaaaccttagcattgttaattttggggttttggctgaataaagttgtttcaaatttcaggtagatcacatggatagtgtccaaatgaagcagatggtggaggctgctctctcccagcttgtggcgaccggcagtccgttgagctccatgagctattagttatgagctggatagatatatggagtcatgcgttttggccacctactttacctagtctcattcgcaataaagcgcatttttatgtatgcttggtgatgttgttgttgtcatttttgcgacaccccactacgtgatggaggtggttgttttcttgcgaggcaacgatttagtggctggatgatagatttaagtattttggaaatcttgagtacgctgacttgtttatgtagctattaatattgatgaataataaggtggtccagcttaatg</dnaseqindica> |
| External Link(s) |
