Difference between revisions of "Os01g0100100"
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===Evolution=== | ===Evolution=== | ||
Please input evolution information here. | Please input evolution information here. | ||
| − | The average G+C content in rice is higher than in Arabidopsis, but there are no any CpG islands, indicating a neutral nucleotide distribution in this region. Also, there are a lot of tandem repeats. Some predicted genes were functionally characterized by homology to known proteins using BLASTP. All most all of these genes are also found in ''Arabidopsis''.<ref 5> | + | The average G+C content in rice is higher than in ''Arabidopsis'', but there are no any CpG islands, indicating a neutral nucleotide distribution in this region. Also, there are a lot of tandem repeats. Some predicted genes were functionally characterized by homology to known proteins using BLASTP. All most all of these genes are also found in ''Arabidopsis''.<ref 5> |
| + | This gene encodes Putative GTPase-activating protein, and molecular function is Rab GTPase activator activity, which is homologous with ''Arabidopsis thaliana''. Also, it is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, rice, and frog, and this gene is the one of this supergene family.<http://www.ncbi.nlm.nih.gov/gene/827007> | ||
You can also add sub-section(s) at will. | You can also add sub-section(s) at will. | ||
| − | |||
==Labs working on this gene== | ==Labs working on this gene== | ||
Please input related labs here. | Please input related labs here. | ||
Revision as of 02:15, 29 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here. The average G+C content in rice is higher than in Arabidopsis, but there are no any CpG islands, indicating a neutral nucleotide distribution in this region. Also, there are a lot of tandem repeats. Some predicted genes were functionally characterized by homology to known proteins using BLASTP. All most all of these genes are also found in Arabidopsis.<ref 5> This gene encodes Putative GTPase-activating protein, and molecular function is Rab GTPase activator activity, which is homologous with Arabidopsis thaliana. Also, it is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, rice, and frog, and this gene is the one of this supergene family.<http://www.ncbi.nlm.nih.gov/gene/827007> You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
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Structured Information
| Gene Name |
Os01g0100100 |
|---|---|
| Description |
RabGAP/TBC domain containing protein |
| Version |
NM_001048268.2 GI:297595880 GeneID:4326813 |
| Length |
7585 bp |
| Definition |
Oryza sativa Japonica Group Os01g0100100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:2167..9751 |
| Sequence Coding Region |
2449..2616,3357..3455,4457..4560,6136..6997 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:2167..9751 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:2167..9751 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgtcggccgcgggccaagacaacggagataccgctggggactacatcaagtggatgtgcggcgccggtggccgtgcgggcggcgccatggccaacctccagcgcggcgttggctccctcgtccgtgacattggcgacccctgcctcaacccatcccccgttaaggggagcaaaatgctcaaaccggaaaaatggcacacatgttttgataatgatggaaaggtcataggtttccgtaaagccctaaaattcattgtcttagggggtgtggatcccactattcgagctgaagtttgggaatttcttcttggctgctatgccttgagtagtacctcagagtataggaggaaactaagagctgttagaagggaaaaatatcaaattttagttagacagtgccagagcatgcacccaagcattggtacaggtgagcttgcttacgctgttggatcaaagctaatggatgtcaggactatgtcaaaagaaacccacattgcagaagaagttagcacaagtcaacaaacttcacaaaatacagctggcagtttagtagaagattcagattatggccccggtggtgcacagcagtcacaaaaaagggaaagctgtagtaaatcagctgaactagttggtttcaacgtacataatgatacctctctttatgattcttccaattttattgtgtcttctacagaagtgaataattgctcaaaagattctcaggattacaatgacatgggtgaaccaagatatgacactgagaccttcgatgattatccttctctacctgttacaaattttttctcaactgatggtgtgggcagcaatggagttgataaaaatcattgtagtttctcagttcctgaagatagattaaggcaccgtgatgaacgtatgcacagcttccaaatcaataataacatagatctcattatagagtcaaattcatgctccagtgatgtgtttagggctagcaacagtgattcagccatctttcactcagatgcatacaagcaggatagatggttagatgataatggctataacagggaagttatagattccttgaggatatctgatgcaccagaagcagattttgttgatggaaccaaatccaacagtgtggttgccagcaaagatcgagtctctgaatggctttggacactgcaccgaattggtatgctctattttttcttcacttcatcatgcaattacagtggtatcttgtga</cdnaseq> |
| Protein Sequence |
<aaseq>MSSAAGQDNGDTAGDYIKWMCGAGGRAGGAMANLQRGVGSLVRD IGDPCLNPSPVKGSKMLKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEF LLGCYALSSTSEYRRKLRAVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMDVRTM SKETHIAEEVSTSQQTSQNTAGSLVEDSDYGPGGAQQSQKRESCSKSAELVGFNVHND TSLYDSSNFIVSSTEVNNCSKDSQDYNDMGEPRYDTETFDDYPSLPVTNFFSTDGVGS NGVDKNHCSFSVPEDRLRHRDERMHSFQINNNIDLIIESNSCSSDVFRASNSDSAIFH SDAYKQDRWLDDNGYNREVIDSLRISDAPEADFVDGTKSNSVVASKDRVSEWLWTLHR IGMLYFFFTSSCNYSGIL</aaseq> |
| Gene Sequence |
<dnaseqindica>283..450#1191..1289#2291..2394#3970..4831#caaggagtcctcgctgaggaagctttggatccacgacgcagctatggcctccccgcccaccaggccgccagccacaaccagctgactaggtaggcttcctaggtagggatcccatcccttcgattccctactccctcccccgattgatttgatttgatttgatttaattcgattgcctgcttttcaggtcgcatgcatcatcagatttcaatctcccttcgttccctgtccctaatccaataccaatagggagcaatcagctgctcctcgacggcgagggagatgtcgtcggccgcgggccaagacaacggagataccgctggggactacatcaagtggatgtgcggcgccggtggccgtgcgggcggcgccatggccaacctccagcgcggcgttggctccctcgtccgtgacattggcgacccctgcctcaacccatcccccgttaaggttcgcctactcctactctagctccatatggatatggattcgattagctgtctacattctatgccatcaatttgttttccatcacttctcattatacatctccattgctctctaaattaaggcttctctagctctatcctatatatatactagtactccgtatatgattctgcttcatcacttatttattcatcatcataccgtgaagctgtataagtcctgttatttgtcatttggcatatgttgtatagataacactttcagcccagggactttctattgccacttttatacatatacaatcaacatttagcatatgtatatcctgtaccgctcagttgtactgctgctttgaagataatgtttgcaaaacatatgagctcacacacgaggctagatgctgcataggctgcacaatggggtagccattttgatacttcttaatgctatttatgctggtccaaatgttcattggtagcctcaggcagagaattttagggagatattatgtcaaactccctggattcactatgattatacaatattacccattcaatccattcaaataaatttccaggtcaactcacatattgtactgaaagaagactaatttgcactaatcatatccttttatccaccagagtatatgagattgtcttctatatgcaatttacttcatatcgacatttttctgcagaattgcaaaactgacgccttgttttccatctggaattgtgcaggggagcaaaatgctcaaaccggaaaaatggcacacatgttttgataatgatggaaaggtcataggtttccgtaaagccctaaaattcattgtcttaggggtgagttaattgtttcttttgtgcttcaaaaacttgttttttcatgtattttagctgttgaagggtgtggatttttttttcagtcttaatacattaccttttagagcatgatgccccacgcgccatttgtgaatgtgtaaaatagggaagatcaaatagaacgtgacaactgtttattttattaccatgatcattgttctctttgagagtgtctgctttggaaatttcaaagaaattaatgcatatgattgcgtagctctagtttttcttaaaaaaataagcggctaggctctttatactattatgtcacagagtgtttgccttttacctgtgtatgtagctaggcataaacatttgtttgtgggtaaatacaaaaaaaaatccaatgtgtagaaactgcttataaatacataaaagttacataaatacataactgcttcaaataagcaagatttgaacataccttcacataagctttcccctaactgaaaagccatttggtataaccttatagaaattagatatagtggagatgtggaatgagctgctatcaagtcttgtttcgtgaaagcaaactgacacggtctccacagcaaacacgtccacagctttgcaattagtatctttataggaaggtcaatcagagttcattggccatatcttggaaaaaaaaggcatcagattttagtttaattatgtctatattttaggcatggattattgatcatttttgcagcagactaagtttaatgcatgtagttattttccttgattagtgattagtgttgttattttctatacaccactggcactgatagatgtgctccatgctttgcaatgcatcaaaattatcatatcgtgcctaactcatgctttgcacagatatcatttttttgtgttctggcactatctaaagaattgtctataaactaggaacaataagatcgcatcgtactattcttcacattaaaacatttcttacccccaaaattgatgtgcagggtgtggatcccactattcgagctgaagtttgggaatttcttcttggctgctatgccttgagtagtacctcagagtataggaggaaactaagagctgttagaaggtttgacactttcctgttttcagtaccaggataccttttttgtacaagcataagaccgtaagagcataaatgaattgcatttattatctagaataaaatcatgaatgttacagttatgtagtactccctccattccaatatataaggatttcaaggattcaaattttgtaccacaatataaggatttctgcactgattcccataatacccatcatttcagtgattcccaaaccaatcaaatgcatagaaagggaaaagaatcttttgacctaaccttggtattggctaaacaacctagaaatctttatattttggaaaggagggagtaggtattaatttgtttgttttttgtttattgtactaaaactgaacttctaggtaaatattcctatcctttacattttccttgtgttatttataaccatgtgtgcagaatggaaaatgatattaaaagtttaaaacaaatgtgttgctatgtttatctggagtaccaatctcaatctttttcaggcactcaaagtaacttgattagggtttagggtttaccccttttcattgtgctacctcctatacacattgttggggggatgaattggtggcatcagtactcatagtttgtctatgtaacatctacttgtgctgatgttgtatgatccatttggtttagatggcttgataagtaccccgtgcctgcacacaacaatatgacagattatatcaatacatctagggtagaggtaaatgaaagactgagattctagatattgcatacaattcctaggtatttgtggtcatggcctgtgggtgatatcgggttggatatgatccaccaaacctggagcagaaaatttctaagactagttgccagaatagaattctcttggaaatttaacagttccaaacagcctgttcacaaacccattatccattcactagcaggtgctggacagaaaatatgttgttcataggggtttgaacctgggacattaaattctgtagtacgtggtagccaacagtgccaatggctctttctttgtaatggaaggatgcgtattaaagaaattaagtagatgggttggcattgcacactaattagtaatgcaaatataccttagtttattgtgatctctgtaattataattgcatatttatattcctttttatgtctaactatcgaagcgtacctgtgctattacagataaacttattacgtcatatgttcatgttgaattgattggcgtgcgattagtcctttctgtttgcatctgcttgttttattcacttgtgaccaacaaatttataaccaacatcatgtatgccatccataccaattgttgtgcgagaaattctacgttttgcctttgttaccgattctactaattgttgctgatgaatgcgaattccgtgaaatgccatcgcacaagtgtttttattcctttgtttccatttctacggagcagggcaatcagtacagttctgaaattcttgctgagtgttctttcttttgaaagtttttacacctgtgggacaattatggaagcctgtaacctcgtttatttcttcgcttctatgcagggaaaaatatcaaattttagttagacagtgccagagcatgcacccaagcattggtacaggtgagcttgcttacgctgttggatcaaagctaatggatgtcaggactatgtcaaaagaaacccacattgcagaagaagttagcacaagtcaacaaacttcacaaaatacagctggcagtttagtagaagattcagattatggccccggtggtgcacagcagtcacaaaaaagggaaagctgtagtaaatcagctgaactagttggtttcaacgtacataatgatacctctctttatgattcttccaattttattgtgtcttctacagaagtgaataattgctcaaaagattctcaggattacaatgacatgggtgaaccaagatatgacactgagaccttcgatgattatccttctctacctgttacaaattttttctcaactgatggtgtgggcagcaatggagttgataaaaatcattgtagtttctcagttcctgaagatagattaaggcaccgtgatgaacgtatgcacagcttccaaatcaataataacatagatctcattatagagtcaaattcatgctccagtgatgtgtttagggctagcaacagtgattcagccatctttcactcagatgcatacaagcaggatagatggttagatgataatggctataacagggaagttatagattccttgaggatatctgatgcaccagaagcagattttgttgatggaaccaaatccaacagtgtggttgccagcaaagatcgagtctctgaatggctttggacactgcaccgaattggtatgctctattttttcttcacttcatcatgcaattacagtggtatcttgtgattatgttctaatttgcaaaacctattacagtggttgatgtggttagaacggatagtcatcttgatttctatggagaatcaagaaatatggctaggatgtcagatatacttgcagtttatgcatgggttgatccttccaccgggtattgccaaggtatatgcatatttcagtggcatctttttttacttcctttttggtttcttgatgtgtctaaatgggataagttgctaacaggtatgagtgatctactttcaccttttgttgttctctatgaggatgatgcagatgccttttggtgctttgagatgctactgagaaggatggtaattcacatatatttcaaattttgttgcctattagtttggtttctatgttactccatgcataatatgtgccctgttccacttcagcgtgaaaatttccagatggagggaccaacaggagttatgaagcagttgcaagcattgtggaagatcatggaaataactgatgtagaattatttgaacatttgtcaacaattggtgctgaaagccttcattttgctttccggatgctgctagtgctttttcgtcgagagctgtcctttgaggagtcacttagcatgtgggaggtgtggcatttgaagacacatgtattatcttttttcagttgttgttcttcgtaggaaagctctaatggatgtttgtttgtcagctggtgtaggtctaggggatgttggttaagccttttttatttcaaaaattgtattactagttaaatatttcaaatagtaaaatagggtacatcttcgatttaggttcaaaatcatcagaggtgtaggtagatggttcattacgattgtagttaatgtttgtgatatcatgtggcatgtgaactttatactccctcgggtcacaaatatttgacgtttaggacaagatgtggtcaaacttttaaaattttgaccgtcaataacagctcaaatgcgtagcttataaaaacacaaaaaaagatatgcggagatttgccttgcaaggtattagtgtcataatatgatacacttattagattttatagtcttattctgatataaaattgatggtcagtttcaaaagttttgaccaaatcttgttctaaacatcaaatatttatgatcggagggaacattacttataaaatgctcttcacactgcagtcttgatctgttaaccaaccgtgcttcttgctttcagatgatgtgggctgctgactttaatgaagatgtgattttacatttggaagagaattgtctggagccattgctggtagatatgaggaatgatttatcatgtgaggtgaaagaagagcaccgggtgaacagttacacaagaagaaagtccaaaagcaggaagccccatcatagaaatggtgaaatgcgtgtagcttgcaaccttggaatgaaacccaatacaagaaatcccctctgtggcttgtcaggagctactatttgggcaagacatcagcagatgccacatataagcacaaatgtgttagcaaagaatggagatgatgatctgcctatattctgcgtagcagcaatccttgtaatcaatcgccacaagataattagagaaactcgctcaatagatgatgcaatcaaggcaagtttaagtcacaacttcctttcatattgtttacaaacctcggatccatgaaattactaccaagagttacctatatttgcattagattttgtggaattcattttaggcaaaattaaaaatttgctcagacagtacaataacatgttatggccgatcatttctgcataaatgactattgattttgtcctctgctgaattgatgggtttaattagaggatgcttatttcattctgataactatcaatatttacaagttacggcaactgctaattaaaaatgatgcccagcctttctccctcttggaaaaaaagatgggtaaacctgtatatagtggtgatattgactctgctgagcagtcttccacttaaatgggaagagttaaggaaagtatagtcaggtttacttataatgcaacttattggcatattaatgcatgtttattgtttgcactcctgaagttgagttggtcaattttttccatagatgttcaatgataatatgctgaagatcaatgtaaaaagatgcgtacgcatggctatcaagctgaggaagaagtatatttacaaggtaaattgtgataagcatacatgagcaccatccatgtttttcaggtatatttacaaggtaagttctaatttggtcttgggatacagttattgaaggggggctcggaatgatgaaaaagtggaaactgaagttgagaaatcgccctggggaactagatgtttttcaaccatgaacttctcgtaattatgggtgatggaactttatatattcattagaagtccaaaaaaaatccgtatactcacggtatggattccctctttctgtttatgttttgttagagatggatgacgtacataatctgcttgtcttgtttcagggaatctgtacatatgcacagtatacttgaaaacaagagacgaagcggtggaaggataatagagaagaccgccatgttggtgtagcatcgatcgatgttgtcattgtttttgtggtgccagcccatctgccttggcactttccgtggtgatttctgataaaagtggagtactagttgttttttctttttgccaaacaatttgcgtcagctattggtggagagagaaggaatgaatgaggaatgtgtat</dnaseqindica> 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