Difference between revisions of "Os03g0182800"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | OsDERF1 is a novel ERF protein of unknown function Multiple factors, including water potential and osmotic adjustment, affect plant water status and drought tolerance. To elucidate the molecular basis underlying drought response, transcript levels of genes were screened under drought conditions. Using expression | |
| + | data for stress treatment in rice seedlings (http://www.ricearray. org), 12 drought-responsive ERF genes (DERF) were identified (Table S1, GEO accession number GSE26280). One of the DERF genes, OsDERF1 (Os08g35240), located in rice chromosome 8, encodes a 243-amino-acid protein with predicted molecular mass of | ||
| + | 23.8 kDa. Amino acid analysis indicated that the putative protein contains a typical ERF/AP2 domain at 26–91thamino acids, an activation domain at 161–180thamino acids, and a nuclear localization signal at 25–34thamino acids. | ||
===Expression=== | ===Expression=== | ||
Revision as of 08:49, 3 June 2014
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Contents
Annotated Information
Function
OsDERF1 is a novel ERF protein of unknown function Multiple factors, including water potential and osmotic adjustment, affect plant water status and drought tolerance. To elucidate the molecular basis underlying drought response, transcript levels of genes were screened under drought conditions. Using expression data for stress treatment in rice seedlings (http://www.ricearray. org), 12 drought-responsive ERF genes (DERF) were identified (Table S1, GEO accession number GSE26280). One of the DERF genes, OsDERF1 (Os08g35240), located in rice chromosome 8, encodes a 243-amino-acid protein with predicted molecular mass of 23.8 kDa. Amino acid analysis indicated that the putative protein contains a typical ERF/AP2 domain at 26–91thamino acids, an activation domain at 161–180thamino acids, and a nuclear localization signal at 25–34thamino acids.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os03g0182800 |
|---|---|
| Description |
Similar to Ethylene responsive element binding factor3 (OsERF3) |
| Version |
NM_001055711.1 GI:115451150 GeneID:4331843 |
| Length |
1992 bp |
| Definition |
Oryza sativa Japonica Group Os03g0182800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:4322061..4324052 |
| Sequence Coding Region |
4322456..4322739,4323187..4323609,4323725..4323998 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:4322061..4324052 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:4322061..4324052 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtgcggcggtgcaatcctcgccgatttcaccccggcgagggtgccccggcggctgaccgccgccgagctcctgccggtgaccccgactccccccgccgccgagaggagaaccacccggaagcgcaagtccgacgtcgacttcgaggcggagttcgagcttttcgaggacgacgacgacgacgatgagttcgagctttccgacgatggcgacgagagtttggccgtgtcatgtgtgtcgtcccccaagtcgaaggcagtaccttcgttttctttttcgtcggatgtctcctcgagctccaggccgcggcggcgcgtggcggcggcggcggccggtcgtcggaaggcgagcaagaagagcaagtacaggggcgtccggcgccggccgtcggggaggttcgcggcggagatcagggaccccaagaaggggcggcgcgtgtggctcggcacgtacggcagcgccgaggaggccgccatggcctacgaccgcgaggcccgccgcatccgcggcaagggcgcgaggctcaacttcccccgcgacggcgatggctcccctcgccggagtaacgaccggccctgctggaccatcgacctcaacctccccgcggcggccgtctccggtgacgacgacgacgccatggccgtcgacgccgcagacgcagacgcaggcagtgctggccgtgcagcagcctatgcagatcaagaagcactgagcgcggcaaagtgcaagatcaagcagtgtcctcgcgacgaacagatggcgagcgccacacctgagctcatggaggaggacgcgagcagcagcagaaacatggtgcccctgtccatggcgctgcagctgcagtatgcggcgatgatcgccgaatgcgaccgcgagatggaggagatcgccgccgtggagagggacctcgagaggcgcaggaggcaggtgttcgagcgcagaggccacctggtcaggcaggcctctcttctgctcgactga</cdnaseq> |
| Protein Sequence |
<aaseq>MCGGAILADFTPARVPRRLTAAELLPVTPTPPAAERRTTRKRKS DVDFEAEFELFEDDDDDDEFELSDDGDESLAVSCVSSPKSKAVPSFSFSSDVSSSSRP RRRVAAAAAGRRKASKKSKYRGVRRRPSGRFAAEIRDPKKGRRVWLGTYGSAEEAAMA YDREARRIRGKGARLNFPRDGDGSPRRSNDRPCWTIDLNLPAAAVSGDDDDAMAVDAA DADAGSAGRAAAYADQEALSAAKCKIKQCPRDEQMASATPELMEEDASSSRNMVPLSM ALQLQYAAMIAECDREMEEIAAVERDLERRRRQVFERRGHLVRQASLLLD</aaseq> |
| Gene Sequence |
<dnaseqindica>1314..1597#444..866#55..328#cccgcgtcgcgccatagcgacgtctctcccggagaaagaagagcgcgccgcgccatgtgcggcggtgcaatcctcgccgatttcaccccggcgagggtgccccggcggctgaccgccgccgagctcctgccggtgaccccgactccccccgccgccgagaggagaaccacccggaagcgcaagtccgacgtcgacttcgaggcggagttcgagcttttcgaggacgacgacgacgacgatgagttcgagctttccgacgatggcgacgagagtttggccgtgtcatgtgtgtcgtcccccaagtcgaaggcagtaccttcgttttcttgtacgatgagatggagaaatcttgcctgctttcttgaaggattttcacctgacggcaacctgaactttacacgatttcttctcctgctgttgatttcatcgatcgccggcggcagtttcgtcggatgtctcctcgagctccaggccgcggcggcgcgtggcggcggcggcggccggtcgtcggaaggcgagcaagaagagcaagtacaggggcgtccggcgccggccgtcggggaggttcgcggcggagatcagggaccccaagaaggggcggcgcgtgtggctcggcacgtacggcagcgccgaggaggccgccatggcctacgaccgcgaggcccgccgcatccgcggcaagggcgcgaggctcaacttcccccgcgacggcgatggctcccctcgccggagtaacgaccggccctgctggaccatcgacctcaacctccccgcggcggccgtctccggtgacgacgacgacgccatggccgtcgacgccgcagacgcagacgcaggcagtgctggccgtgcagcagcctatgcaggtactaccacctcggaggatatctcaagatgtattaatacgtgatatatcactttgtaaatatgcatgtttaaaattaactcctacatctcaaaataaaataaaacaatttaattgtgaatatacgttaactagttatagtttaatttatttttttttcgtttttatttttttcgttgcgggagtagaagttgaatttgaatttgcatgtgtgctggcggagaaacttggctcgtaggctcgtagcatggagcattgccctgttcgcatcatatcatacggttgagctcgatttttgcgaaagaaagaaaggattccaatattctcactgatgaatgatgatcaaggttgataaaatgagcgaactcgatcaaaccaaaccaacaaatttcgaagaatcaagtagatttactaatgtattggcgttgttggcttgttgccgtcgcagatcaagaagcactgagcgcggcaaagtgcaagatcaagcagtgtcctcgcgacgaacagatggcgagcgccacacctgagctcatggaggaggacgcgagcagcagcagaaacatggtgcccctgtccatggcgctgcagctgcagtatgcggcgatgatcgccgaatgcgaccgcgagatggaggagatcgccgccgtggagagggacctcgagaggcgcaggaggcaggtgttcgagcgcagaggccacctggtcaggcaggcctctcttctgctcgactgacgatcttgctgaactgaactctgaatgtttgagcttgtctgaagtctgaactctgcactatgccatatggtgtttcaccttcactgtgaggctgacatgtgggccagacgtccgtttgccttgcttgcttttgagctgcaactgggcgttgtgctgcaagcctgcaaagtgcctgtgtaaagtttgtgggattgtgtgtgtggatcttgtatccttgtgactttgcaagctttaattttgtgaggaacaatagtattttagattggtgtgtaaaatatagaaataaataatagtagcaactaaattttggttttcagctcttcatcagatggtttgtcatgggaacaaaatttcaaacatgagcaaattaaggtcatgttattatcaattgtgat</dnaseqindica> |
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