Difference between revisions of "Os02g0121300"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | Os02g0121300 is a cyclophilin gene.It encoding OsCYP2 protein,which interact with co-chaperone Suppressor of G2 allele of skp1(OsSGT1) to effect the process of the degradation of auxin-responsive proteins.It is important in rice lateral root initiation. Futhermore, another study shows that OsCYP2 expression can be induced by salt stress and circadian rhythm. And OsCYP2 able to control Reactive Oxygen Species(ROS) level as a modulator through mediate the activities of antioxidant enzymes at translation level. | |
===Expression=== | ===Expression=== | ||
Revision as of 13:38, 3 June 2014
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Contents
Annotated Information
Function
Os02g0121300 is a cyclophilin gene.It encoding OsCYP2 protein,which interact with co-chaperone Suppressor of G2 allele of skp1(OsSGT1) to effect the process of the degradation of auxin-responsive proteins.It is important in rice lateral root initiation. Futhermore, another study shows that OsCYP2 expression can be induced by salt stress and circadian rhythm. And OsCYP2 able to control Reactive Oxygen Species(ROS) level as a modulator through mediate the activities of antioxidant enzymes at translation level.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os02g0121300 |
|---|---|
| Description |
Cyclophilin 2 |
| Version |
NM_001052252.1 GI:115443874 GeneID:4328121 |
| Length |
887 bp |
| Definition |
Oryza sativa Japonica Group Os02g0121300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 2:1116066..1116952 |
| Sequence Coding Region |
1116160..1116678 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008395:1116066..1116952 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008395:1116066..1116952 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgaacacgagggtgttcttcgacatgaccgtcggcggagctccggcggggcggatcgtgatggagctgtacgcgaaggacgtgccgcggacggcggagaacttccgcgcgctctgcaccggcgagaagggcgtgggcaagagcggcaagccgctgcactacaaggggagcaccttccaccgcgtgatcccggagttcatgtgccagggcggcgacttcacccgcggcaacggcacgggaggggagtcgatctacggcgagaagttcgccgacgaggtgttcaagttcaagcacgacagccccggcatcctgtccatggcgaacgccgggcccaacactaacgggtcccagttcttcatctgcaccgtgccctgcagctggctggacgggaagcacgtcgtgttcggccgcgtcgtcgagggcatggacgtcgtcaaggccatcgagaaggtgggatcccgcggcgggagcaccgccaagccggtcgtcatcgccgactgcggccagctctcctag</cdnaseq> |
| Protein Sequence |
<aaseq>MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEK GVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSP GILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTA KPVVIADCGQLS</aaseq> |
| Gene Sequence |
<dnaseqindica>95..613#acgcagcgatctgaagtgaaacagcaaaaaaaatcaaacaaaaagaaaaaatattccccatctgtgaaattcgcaaaaccctagcgcggcggcgatgtcgaacacgagggtgttcttcgacatgaccgtcggcggagctccggcggggcggatcgtgatggagctgtacgcgaaggacgtgccgcggacggcggagaacttccgcgcgctctgcaccggcgagaagggcgtgggcaagagcggcaagccgctgcactacaaggggagcaccttccaccgcgtgatcccggagttcatgtgccagggcggcgacttcacccgcggcaacggcacgggaggggagtcgatctacggcgagaagttcgccgacgaggtgttcaagttcaagcacgacagccccggcatcctgtccatggcgaacgccgggcccaacactaacgggtcccagttcttcatctgcaccgtgccctgcagctggctggacgggaagcacgtcgtgttcggccgcgtcgtcgagggcatggacgtcgtcaaggccatcgagaaggtgggatcccgcggcgggagcaccgccaagccggtcgtcatcgccgactgcggccagctctcctagatctgtgctgttccccttcgcctttcgccagtatcagtcgtcttgagtcgtcgagtccctaaataaggaggaggtggtggtggtgttagtctttttatgagttcgtgtcgtgttggtgagatgagatcgcccatggtttggttggattaggcggagttcttggatcgattcggtggagttggatctgcgatccttcttggggttggttttaaatcttaattcgtgtcgctgcttctatgatatcgctatcaatcaatgagaacatttgggatcc</dnaseqindica> |
| External Link(s) |
