Difference between revisions of "Os10g0177200"
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===Expression=== | ===Expression=== | ||
| − | + | The data from both microarray and qRT-PCR analysesshowed that the expression levels of OsDSR-1 (AK064016.1 | |
| + | accession number) were up-regulated by 60- and 5-fold in the panicle of rice at booting and heading stages, respectively, | ||
| + | under drought stress condition relative to panicles under normal growth conditions. | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 13:59, 4 June 2014
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Contents
Annotated Information
Function
Rice gene Oryza sativa Drought Stress Response-1 (OsDSR-1) was one of the genes identified to be responsive to drought stress in the panicle of rice at booting and heading stages by both microarray and quantitative real-time PCR analyses. OsDSR-1 encodes a putative calcium-binding protein, and its overexpression in Arabidopsis rendered transgenic plants to produce much shorter lateral roots (LRs) than wild-type (WT) plants in the medium supplemented with abscisic acid (ABA), suggesting that OsDSR-1 may act as a positive regulator during the process of ABA inhibition of LR development.[1]
Expression
The data from both microarray and qRT-PCR analysesshowed that the expression levels of OsDSR-1 (AK064016.1 accession number) were up-regulated by 60- and 5-fold in the panicle of rice at booting and heading stages, respectively, under drought stress condition relative to panicles under normal growth conditions.
Evolution
Please input evolution information here.
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Labs working on this gene
Institute of Subtropical Agriculture,Chinese Academy of Sciences,Changsha, Hunan 410125, People’s Republic of China Laboratory for Agro-ecological Process in Subtropical Region,Institute of Subtropical Agriculture, CAS,Changsha, Hunan 410125,
References
[1]Xu Ming Yin; Pedro S. C. F. Rocha; Man Ling Wang; Yu Xin Zhu; Luo Ye Li; Shu Feng Song; Xinjie Xia.Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions,Journal of Plant Biology,2011,54(3):180-189
Structured Information
| Gene Name |
Os10g0177200 |
|---|---|
| Description |
EF-Hand type domain containing protein |
| Version |
NM_001070778.1 GI:115481299 GeneID:4348196 |
| Length |
4409 bp |
| Definition |
Oryza sativa Japonica Group Os10g0177200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:5006157..5010565 |
| Sequence Coding Region |
5006501..5006737,5006845..5006970,5007079..5007297,5007462..5007758,5010044..5010325 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:5006157..5010565 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:5006157..5010565 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgtcgggcaagatggagaacggccagcagcagcagcagcaggaggtgaggaggaggaggaacggcgaggtggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagttcgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgagggagctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtcggcgcaggccgaccacatctactctgaggttcttaacgagttcacaaaagggaagaaagaatcggtgagcaagtcagagttccagcgtgtcctctctgacatacttcttggcatggcggctggactaaagagggaccccattgtgatcttgaggattaacggtgaagatttgaatgaatttgttgagagcccaaggtacgaaccggagatggctgccatattttcgcaagttgaatcaggaaattcaaccttgcagcagtgcatgctagctgctattcgacaactgacggtcgaccacggcatgccaccggcttcagattcatgggttatggagaatatcatagaacctgcattgcaagaactccatggtgataacctggagcaacctgtcactcaagaggtcttcttccaggaattcagaaagttcttggcaatcctcacgcagcgactccaagggcaccctgtgattgtagcacataccgagaacacctttgatgggaatggtatcaagaagctgctgtcaaacaagctcgaattagataagctgttggattgtgtttggagaggcgtaccgaaagaaaaagatagaacagcgaagcagtacattcgggttgcgttcgataggatggctgactccataaatctaccaccatatggagctgttgaacaggtagatgctgtggtcgatgaggcgttcaagatggcgaaagccgaggacgggaaggcggtggatgaaacggagttcaagaaattgctcactgagatccttggggcagtgatgctgcagctagatggcaatccaatatcggtttcgaccaacagtgtactccatgagccaatgtccacttcttccaccctgctttcgccatcgccgccgtcgccaatggtgtcatcaccgagtgaatag</cdnaseq> |
| Protein Sequence |
<aaseq>MASGKMENGQQQQQQEVRRRRNGEVVVDGSEILQLVENKEAFGK FVEQKFRLLDADGDGRLSVRELQPAVADIGAAIGLPARGSSAQADHIYSEVLNEFTKG KKESVSKSEFQRVLSDILLGMAAGLKRDPIVILRINGEDLNEFVESPRYEPEMAAIFS QVESGNSTLQQCMLAAIRQLTVDHGMPPASDSWVMENIIEPALQELHGDNLEQPVTQE VFFQEFRKFLAILTQRLQGHPVIVAHTENTFDGNGIKKLLSNKLELDKLLDCVWRGVP KEKDRTAKQYIRVAFDRMADSINLPPYGAVEQVDAVVDEAFKMAKAEDGKAVDETEFK KLLTEILGAVMLQLDGNPISVSTNSVLHEPMSTSSTLLSPSPPSPMVSSPSE</aaseq> |
| Gene Sequence |
<dnaseqindica>3829..4065#3596..3721#3269..3487#2808..3104#241..522#acttcagctgcaacggagaaatcgacgcaaaaacaaaccgcagaaagaaagaaaaaaacaagaaaggcaagaaagctactggttttcagctcgatcatcttgtgattagctcacacactttttgccacctttttgcgagagactgatcgaagtatactcttcgtctaggttgtgttcacggggagcttggtgccattgctgcaagttggggaactttttgggttgtagaaaaggaagctgatggcgtcgggcaagatggagaacggccagcagcagcagcagcaggaggtgaggaggaggaggaacggcgaggtggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagttcgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgagggagctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtcggcgcaggccgaccacatctactctgaggtagtaattccttgtatatcctgatgttcatttatttctagagggaaatacatcctgatgtgtgtcagtgtgtcatgaagttgacgctacctacagctgttaactgtcttaatgtctttaccgatttggtcgatttttgtcatgttcatgttcatgtgtcacgaacgtattttagaattaagataggtttatatatatatatatttcatatttcaaaatcttttagaagatacaacagatttcttgtaattaatggtacatatactaactccgttttgctgttgattttggaaacacatactacctccgttttgcggttgattttagaaactcttgtctaagtatcaatttatctttttattttttcactaaagataaaataagcttgactcatgcattttttttcatattttcgactaatctatttgttttgtcattaaagataatataagcatgactcacgatcgtaaaatttgtcaactttttttagcatttttatttatttattaaataaataaatcttgtatgagagtacaaacaagagggaagtgtaggcgaaataaactaataaggagtgaggataaagagagctattcatctacaaattctagatgttcagtagaacattgttaatggaaatacaatggtgagaaaaaaaatagatagaaaaacttaaaaatgtttattttcatatttgtgactaatggtcgacaaaggttatgtacaaaagtcaacattacaatatatttaaaaagggagcaaacgttatatatcaaagtcattgttatcatatatctaaaaatggagggagtagtttaattataattgttaaagtttgattttctcatggcattcaaagtcagccagcgtataataaaattggttaaaaggaagcgatcaaaatgggggagagtgtttctcttttcttaaacaaggagatagcatattgtacatacgggctcattattttgattctactaaccgttgatgcttttcactaagcattactccttcagttccaaaatataagggattttgatttgataatacgcatcctagtaatacgaatgtagatagtccagattcgtagtattaggatatgtctatccaaccaaaattgtttgaattttgtgacggagggagtacattttgggcatttctatttttttaaaataatggaaaaccaaaaatactggttggatacttagaaccgacacctatgtcaattggcataggtgacgccaaattggtgtcggttgagaaaccggcacttataattaagtggtttccaaccagcatctatatggtgctctgtaatagttattatagcgttatgcctcttcaaggacacgaataatgcattaaaaaaatcagacacttcttttatgtttattttgttcagtttagtaatatgatttggctcatctggccatgacagaaacgaatatgaagttttatggtggctctaggaagcaaattaagcaattattcagaaaaaaagttataatctgacagtacaaaaaaatgatgcactagatttcatggaaaatggaaaagatgtgttttcactttacgggtttcattacagtatttagtacattacagatgaaaaggttttatggactcccataaaaaagggtttttttggacttgttctttttgaaattgtctgaagaatttcttttggaaatgaatacactcagggtgaatatagaagaaagtattttgagattttcctataattccactagagtatgagtattgctttgacctgccaaatggaagaaactggaacgtgcctaaattaaccaggaaaacgtcacattctaatgatctagccccaagacttatcagttgacagaacaagataatcttactgaaagtgactgctcttgtgtggccaaagtcatcatccttttcaaattcccatccaatttgtctagcatgttctaggtgtctacctcctgaacattctgatatcgctgtaacttatcattccggtttcttagacacatcttttcgaaagatgatgcctataacgatttcttagataaatattagttccttttgacacatgttctcttgcttactcttgacagtgacaaaaataatggtttactggattttcttccagagaggtgtctgttcatgagctctacttccattatacattgtcagtaacttgcagtaaaattttaatcacatttcctggataatcttgaaccaaaacatccgataattactgttgtctaattcatctcatggctcatggaattaacctgcaggttcttaacgagttcacaaaagggaagaaagaatcggtgagcaagtcagagttccagcgtgtcctctctgacatacttcttggcatggcggctggactaaagagggaccccattgtgatcttgaggattaacggtgaagatttgaatgaatttgttgagagcccaaggtacgaaccggagatggctgccatattttcgcaagttgaatcaggaaattcaaccttgcagcagtgcatgctagctgctattcgacaactgacggtcgaccacggcatgccaccggcttcagattcatgggtaattgccaatgaatgtgttacataattcagagcagaaaacgaaatcatttcatacagggtaacaaatataacagagtaacagttattctgttaccgagactgacaaaacagagtggagatgaggttaagagagaaattagtaaggttggctgttttttacaggttatggagaatatcatagaacctgcattgcaagaactccatggtgataacctggagcaacctgtcactcaagaggtcttcttccaggaattcagaaagttcttggcaatcctcacgcagcgactccaagggcaccctgtgattgtagcacataccgagaacacctttgatgggaatggtatcaagaagctgctgtcaaacaagctcgaattagataaggtacggtattgtttctatcctcgatgtcatcatcttcccataaaaatatactcctatatattagtgttacttcataccgatctacttatactatcttttgtgatcaagctgttggattgtgtttggagaggcgtaccgaaagaaaaagatagaacagcgaagcagtacattcgggttgcgttcgataggatggctgactccataaatctaccaccatatggagctgttgaacaggtagaatttcatttgctaccaatcatttcatcagtaattttcaggaaaaccagccaaaacacattgtatgttcagatctaaggcttatggtaagttggtaactgcaggtagatgctgtggtcgatgaggcgttcaagatggcgaaagccgaggacgggaaggcggtggatgaaacggagttcaagaaattgctcactgagatccttggggcagtgatgctgcagctagatggcaatccaatatcggtttcgaccaacagtgtactccatgagccaatgtccacttcttccaccctgctttcgccatcgccgccgtcgccaatggtgtcatcaccgagtgaatagaagcaagatggaaggaagctgatcatagaatggacagtggagaatataatttccactggtggtaacagtaactgcaatataatgctggttttcttctgatcaatgaacaaactgcagtaacttgatagttgccatgtaactggagacctggtgcaaatatgtttgtgttggtgtttgtaactacgttctaagtgtttagtgtcggaataataaggcttctaattaagccagcagttgaacaacggggaataatttatttcaagcttttgttttgggtgcagcagatgcttggaaatggcaagcttggggaccaataatggtatgataaaactatgttagtaact</dnaseqindica> |
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