Difference between revisions of "Os03g0811100"
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===Function=== | ===Function=== | ||
Please input function information here. | Please input function information here. | ||
| + | rice Chl1 and Chl9 genes on chromosome 3 encode ChlD and ChlI subunits of Mgchelatase,respectively.MgProto accumulated at a lowerlevel in both chl1 and chl9 mutants when the seedlings were fed by ALA-DP in complete darkness, indicating that Mg-chelatase activity is severely reduced, resulting in decrease in chlorophyll synthesis and underdevelopment of chloroplats. In addition, we present for the first time that the ChlD subunit of Mg-chelatase also negatively regulates the expression of nuclear genes encoding photosynthetic proteins in chloroplasts. | ||
===Expression=== | ===Expression=== | ||
Revision as of 11:42, 5 June 2014
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Contents
Annotated Information
Function
Please input function information here. rice Chl1 and Chl9 genes on chromosome 3 encode ChlD and ChlI subunits of Mgchelatase,respectively.MgProto accumulated at a lowerlevel in both chl1 and chl9 mutants when the seedlings were fed by ALA-DP in complete darkness, indicating that Mg-chelatase activity is severely reduced, resulting in decrease in chlorophyll synthesis and underdevelopment of chloroplats. In addition, we present for the first time that the ChlD subunit of Mg-chelatase also negatively regulates the expression of nuclear genes encoding photosynthetic proteins in chloroplasts.
Expression
Please input expression information here.
Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os03g0811100 |
|---|---|
| Description |
Similar to Magnesium-chelatase subunit chlD, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) |
| Version |
NM_001058203.1 GI:115456134 GeneID:4334537 |
| Length |
6670 bp |
| Definition |
Oryza sativa Japonica Group Os03g0811100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:34806026..34812695 |
| Sequence Coding Region |
34806050..34806310,34807137..34807315,34807489..34807573,34807653..34807969,34808130..34808253 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:34806026..34812695 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:34806026..34812695 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgatggccaccaccgcgctctccgcctccctcccgcgcctactcccgcctcgccgccgccgcttcccgacgccctcctcctcctccccctccgccgcatccacctccacctcccgcgtcgtccgcctgcgggccgccgcggcctcggcgccatccgaggtcctcgactccaccaacggggccatcccctcggggaagggcggcggcgggcagcagtacgggagggagtatttccccttggccgctgtcgtcgggcaggatgcaattaaaactgctctgctgcttggggcaattgaccgtgaaattggaggcatcgccatctcagggaagcgtgggacagcaaagacagtgatggctcgtggcttgcacgctatgcttccacctattgaagtggttgtaggctcgattgcaaatgctgaccctaactacccagaagaatgggaggagggtttggctaaccaagttcaatatgatgctgatggtaacttgaagaccgagattatcaaaacaccttttgtgcagatcccgcttggtatcactgaggataggttaatcggatcagtcgatgttgaagcatctgtgaaatcaggaactactgtgtttcaacctggccttcttgctgaagctcacagaggcgttctttatgttgatgagataaatctattggatgagggcgtaagcaatctacttctgaatgtcttgactgagggagtcaatattgtggaaagagagggcattagctttcgtcatccatgcaaaccacttctaattgctacttacaacccagaggaaggatctgtacgtgaacacttacttgatcgtattgcaattaatttaagcgctgatctgccaatgagttttgatgatcgtgtggcagctgtggatattgcaacacaatttcaagagtccagcaaagaggtttttaaaatggtggaagaagaaactgaggttgcaaaaacccagataattttggcaagagaatatctgaaagatgttgcaatcagcacagagcagctcaaatatcttgtcatggaagctatacgcggtggctgtcaggggcaccgggctgagctgtatgctgctcgagtggcaaaatgtcttgctgctatggaagggcgtgaaaaagtatatgtggatgaccttaagaaagctgtagagctagttattctacctcgatcaatcctatctgataacccacaggagcagcaagaccaacaacctcctccacccccaccgccaccccctccacaagatcaagattctcaagaagatcaagatgaagacgaggaagaggaccaagaggacgatgatgaagaaaatgaacagcaggaccagcagatacctgaggagttcatttttgatgctgaaggtggtatagtagatgagaagctccttttctttgctcagcaagctcaaagacggcgagggaaagctggacgagcaaagaatctcatattctcatctgataggggacgatacataggttctatgcttcccaagggtccaataaggaggttagctgttgatgccacacttcgagcagctgcaccataccagaaactgaggagagagaaagatcgtgacaagacaagaaaggtttttgttgaaaaaactgacatgagagccaaaagaatggctcgaaaagcaggcgcactggtcatatttgttgtggatgctagcggtagcatggctctgaatcgcatgcagaatgcgaaaggtgcagcattaaagttgcttgcagaaagctacacaagcagagatcaggtttcaatcattccatttcgtggagattttgctgaggttcttcttccaccttcaagatccatagcaatggcccgcaatcgtcttgagaagctaccatgtggtggcggttctcctttagctcacggccttagcacagctgtcagagtgggtttgaatgctgaaaagagcggtgatgttggacgtatcatgattgttgcaatcaccgatggaagagctaatgtgtcactgaagaaatcgactgacccagaagccacttcagatgctccaagaccttcttctcaagaattaaaggatgagatacttgaggtggctggcaaaatatacaaggctggaatttcacttcttgttattgataccgagaacaagtttgtatccacaggatttgccaaggaaattgcaagggtcgcccaaggtaaatactattacctgccgaatgcttcagacgctgttatttccgccgccaccaagactgcactctcggacctgaagagttcgtga</cdnaseq> |
| Protein Sequence |
<aaseq>MAMATTALSASLPRLLPPRRRRFPTPSSSSPSAASTSTSRVVRL RAAAASAPSEVLDSTNGAIPSGKGGGGQQYGREYFPLAAVVGQDAIKTALLLGAIDRE IGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNYPEEWEEGLANQVQYDA DGNLKTEIIKTPFVQIPLGITEDRLIGSVDVEASVKSGTTVFQPGLLAEAHRGVLYVD EINLLDEGVSNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRI AINLSADLPMSFDDRVAAVDIATQFQESSKEVFKMVEEETEVAKTQIILAREYLKDVA ISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVYVDDLKKAVELVILP RSILSDNPQEQQDQQPPPPPPPPPPQDQDSQEDQDEDEEEDQEDDDEENEQQDQQIPE EFIFDAEGGIVDEKLLFFAQQAQRRRGKAGRAKNLIFSSDRGRYIGSMLPKGPIRRLA VDATLRAAAPYQKLRREKDRDKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL NRMQNAKGAALKLLAESYTSRDQVSIIPFRGDFAEVLLPPSRSIAMARNRLEKLPCGG GSPLAHGLSTAVRVGLNAEKSGDVGRIMIVAITDGRANVSLKKSTDPEATSDAPRPSS QELKDEILEVAGKIYKAGISLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVI SAATKTALSDLKSS</aaseq> |
| Gene Sequence |
<dnaseqindica>25..285#1112..1290#1464..1548#1628..1944#2105..2228#2932..3024#3418..3513#3827..3976#4050..4247#4535..4690#4838..4945#5114..5248#5331..5486#5666..5786#6304..6389#accgcgctctctccctcccctcccatggcgatggccaccaccgcgctctccgcctccctcccgcgcctactcccgcctcgccgccgccgcttcccgacgccctcctcctcctccccctccgccgcatccacctccacctcccgcgtcgtccgcctgcgggccgccgcggcctcggcgccatccgaggtcctcgactccaccaacggggccatcccctcggggaagggcggcggcgggcagcagtacgggagggagtatttccccttggccgctgtcgtcgggcaggtgagtgagcgagcaactctctgcatagcttctcctgcattggtgttgctgaagacacaagtaccaactaccaagtagtgtggagtggtacaagtaatttgattccccagttgagttgatctgatgcatttcgttgcgcggtatcgcgaatgctgttacaatagagattcgaaatccaacagatgcatttcggtttttgtcgtgttttatgctaatgctattgtaagcgaatcaatcagtggacaaatagtgatcaccgatcagtacacaatgtgccaatgtacatctctgaaaaaatgcctttgctatgagttattttgctgtcatactctctctgaagatgaaacaaacgagctggaatgactttcaagctttagttttcctcccattgttccctgcatcgagttatttttagataatggaagctttattaatatactcagtcaattacacaaagacaatacaaccgcatcgggcccaccccggcctctgcatatgatgcacacagccaaaagaaccaaaaacatccttcccaagcacaaaagaataaccaaaacatagggattagtggctatcaatccgtagactagatcgccacccatgctcctggataaaaaaactccgtgtcacctggtccaactatcgtgatactaccgcaatagtatcccgaagtcccggtttgtggaggacagcctaggtacgtagccaccgggtgactaatgtaataacctgcaaaggagaagacaccatcttgttatcaaaccattgatttatggtctcaactttgtatatgttacaattttaacttaccttattgtgcgtccaggatgcaattaaaactgctctgctgcttggggcaattgaccgtgaaattggaggcatcgccatctcagggaagcgtgggacagcaaagacagtgatggctcgtggcttgcacgctatgcttccacctattgaagtggttgtaggctcgattgcaaatgctgaccctaactacccagaagagtaatgtccccaaatgcatgtctaataatgcttctagaacttctgtttaagcatccaaattcttcttttcacccccacaaagttttacataccaactacaatttgaatatgtttactttcatttctgaaatgattgtcaggtaactcacttgattgttctcctcttatggcagatgggaggagggtttggctaaccaagttcaatatgatgctgatggtaacttgaagaccgagattatcaaaacaccttttgtgcaggtatgctgcatggactttttgtttaaaaaataatttcgacataccattgttagttcaatttcaggtttccccttgacagatcccgcttggtatcactgaggataggttaatcggatcagtcgatgttgaagcatctgtgaaatcaggaactactgtgtttcaacctggccttcttgctgaagctcacagaggcgttctttatgttgatgagataaatctattggatgagggcgtaagcaatctacttctgaatgtcttgactgagggagtcaatattgtggaaagagagggcattagctttcgtcatccatgcaaaccacttctaattgctacttacaacccagaggaaggatctgtacgtgaacacttacttgatcgtattgcaattaatttaaggtactttagactatggatcactcatttactcacttcttttaaccaagttcaggttgtattatcttatacaccctctgttggtgtggagaacataagaaaactctcaatgcatttatgaaataccacagattgctcattccatattgttgttttgttgcagcgctgatctgccaatgagttttgatgatcgtgtggcagctgtggatattgcaacacaatttcaagagtccagcaaagaggtttttaaaatggtggaagaagaaactgaggttgcaaaaacccaggtaccaccgatactgttaaactagggatgtaaacctgtaagatagagtacctcctttattgaactagaatagggtgtagaaactatttagcttttgcttttttttttgtattgcacacaaatagctttcttcagaacagcgatatctaatcaatcagtatcacaaaatatgtggattcattaatatgcttcataaacaaatggtcacatcagacaagttgatacattgatttttggatctttctcacctaattacaacttgtgccatttacatatgatttttcccttgccttcatagtcgaaagtatatacgctattcatggttctgtattttgagatcccaacgtcatccactcatgctgaattaactgcatgtacccacatttacattatattccctgtgttgttctgccacttaacatattttatctggtccaacattcaaaacatcaatctttaatacgtataaaaggtatatgatggcacacaaaataatgccattctatttttgttggacaatactttcacagtttatgacttctattattttactagtatgtagtattgaaaaaataacgtggccaaagtcccacattgaagactatggaaaatcatgagcgactttaactagcaacgatggaggtttagttgaaaacaatattatgcactgttcatctcacaggtggtaatacatggtctaacagataattttggcaagagaatatctgaaagatgttgcaatcagcacagagcagctcaaatatcttgtcatggaagctatacgcggtggctgtcaggttagtttattttgcagtgaaagaattttttagctctgtttggcttaagctgagtaaggagcttgattggaatattgcactgtccttgtaatggtctgtagtctgtaccccatgatcatgcattctggtcataacatgtggcgaggtggctaaaaactgtctgctgtaaccattgatttcattttagttgtgtttatcatgccctgaaatcgatgtggctttgcattattttctgcttgtctagatattatacctgtccgctgtgcaccatgtggttaatgtaatacctgaagcaatcatggtttttgagacactgatgctacttttttgtggttaatgtaattcaaaaagtggctgtgttctcatgtaaataaaactgacactcatttgcaggggcaccgggctgagctgtatgctgctcgagtggcaaaatgtcttgctgctatggaagggcgtgaaaaagtatatgtggatgaccttaagaaagctgttaagtatacttatgcctttgaattcttcattatttaatacagtaagacaccccctgtaatttcctgtttacaactattccttttcatctctttactgaaatgtaccgaaggaaacatgcatcatgatttgttgttaagaacaaaatagaaagctgcaaacttgcacgtaataaaagtcacagcaaaataaattttgccctcgcatggctcacaattttcttctgccatgctggctgtttgcattaatgtaatgatgtcagtatattctgaataaagttaagacatttgacatgtgtgccaccttcttgcaggtagagctagttattctacctcgatcaatcctatctgataacccacaggagcagcaagaccaacaacctcctccacccccaccgccaccccctccacaagatcaagattctcaagaagatcaagatgaagacgaggaagaggaccaagaggttaatacatataccatttaactaacttattcattttgttttctcgtagctcattagctgtactcttggacaggacgatgatgaagaaaatgaacagcaggaccagcagatacctgaggagttcatttttgatgctgaaggtggtatagtagatgagaagctccttttctttgctcagcaagctcaaagacggcgagggaaagctggacgagcaaagaatctcatattctcatctgataggggacgatacataggttctatgcttcccaaggtaaacttcttaatcactttattgtaccaagattcctgaatccagatccttgtttcctctcaattcaatgcctgtagtgttttagagtttctcctatctagaaatgtgtgcataatcattttgcctattttcctctgatgctttctgctgtgttctgtcatttactgatatactatcaaacaatagtcatatactgctgtgttgccttgtattctgccgttcccatcctattgcttggcacctttatcacaagtaggctccaatttgaacagttaattgtgttgtagggtccaataaggaggttagctgttgatgccacacttcgagcagctgcaccataccagaaactgaggagagagaaagatcgtgacaagacaagaaaggtttttgttgaaaaaactgacatgagagccaaaagaatggctcgaaaagcaggcgcactggtaaaaatctctctctctctctctctctctctctctctccaagcctctgagattatcagaatatctgtttgctctgtccttgttatgaagtaaacattgttgtccgatcataagagttaactgctctgtggaattacattttgacaggtcatatttgttgtggatgctagcggtagcatggctctgaatcgcatgcagaatgcgaaaggtgcagcattaaagttgcttgcagaaagctacacaagcagagatcaggtactagttgttaccctgtacgccaccttcagttgttcttccccttgcccctggagatgtgtctttttttctttcaatgtgtaaaaggtatatggttatatggctagcttgtatgctatcgatttttatactggccaatcttaccttatattttgtcatctatctcaggtttcaatcattccatttcgtggagattttgctgaggttcttcttccaccttcaagatccatagcaatggcccgcaatcgtcttgagaagctaccatgtggtggcggttctcctttagctcacggccttagcacagtaagaactaagcattttctcgaacctagctatatgttacagcccatatgtattgattaacaattcggtttttacctcaaaggctgtcagagtgggtttgaatgctgaaaagagcggtgatgttggacgtatcatgattgttgcaatcaccgatggaagagctaatgtgtcactgaagaaatcgactgacccagaagccacttcagatgctccaagaccttcttctcaagaattaaaggtacaactcgtatctaatatcacatggtagtaatgatatgaaaagtatttatttaaactggaaacctgtgaccatcactctgaagctgatatgatgtacgtaaactacttccaagttgcattcttaaaagcatgtatcaatcactctaaagctgatacgatatatttatcttttccaaggatgagatacttgaggtggctggcaaaatatacaaggctggaatttcacttcttgttattgataccgagaacaagtttgtatccacaggatttgccaaggaaattgcaagggtcgcccaaggtactctcggcgtgatatctcttgaattagtagccttcgtttcaaatataagttgttatagatttgcacacatgaattaagaaaatagcttgaataactttgttgcccttcgtttatactacattggaaaaaaagggatctatttatttatcagaggggtactatcgatcttgtgaggacaaacatggaagaaataaaaaaacacgcagaagtttcaaaccaacatatatttagaaaagagttgaaaaaactaaaatgacctacatttggaattagaggcatatacaccatctgccgtaggaataccattatctttcttttctgcatcttattacaccattacttatgagttaagatcataagtctaatttgccacctatttttgactagcaaccttgtaatgttgccatcgcacaaagagatatcttccatgtacatcaatcactaagcaccaaaatactgccaaatgtttgtgcccaatctcctgatataaacctctctttctcgatctctacaggtaaatactattacctgccgaatgcttcagacgctgttatttccgccgccaccaagactgcactctcggacctgaagagttcgtgatcctggagagcgttttaccttcagataatgagtggtttttaccttttaccttgtttggtgcagcagtgtccatgtttcgtgtaactttgggacgtttcggctgtgataaccaattttggcataggatttttaccgtgagagttggaattcgggcgtagcaccgtgtaaagaatcatataatccctcttctgtctaaataattggccatgtaaatatggtgttattgcgtacagttctaagtaataataacattcataatttatgtgaagaaagaaattgcc</dnaseqindica> 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