Difference between revisions of "Os03g0854500"
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==Annotated Information== | ==Annotated Information== | ||
| − | + | Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation. | |
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===Expression=== | ===Expression=== | ||
Revision as of 10:44, 9 June 2014
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Contents
Annotated Information
Heat stress transcription factor (Hsfs) is the thermal stress resistance of the center of the response regulator, at least 25 genes of Hsf indica and japonica genome. According to the structure OsHsfs proteins can be divided into three categories. Digital Northern analysis showed expression of a constitutively OsHsfs, most OsHsfs all tissues have low to moderate levels of expression, wherein, OsHsfA4a OsHsfA4d expression and ears, respectively advantages and adult leaves, while all OsHsfs in both ears and flower higher expression. OsHsfs expression of heat stress and oxidative stress response, and between members of different gene families are different, in the heat and hydrogen peroxide treatment, A class Hsfs than B, C categories have higher expression. OsHsfA1a, OsHsfA2b, OsHsfA3, OsHsfA7, OsHsfA9, OsHsfB2c, OsHsfC1b during thermal processing is upregulated and hydrogen peroxide, and OsHsfA2a, OsHsfA2c, OsHsfA2e, OsHsfA4a, OsHsfB2b, OsSHFC1b upregulated only in the heat treatment is identified in the promoter region of these OsHsfs some with stress-related cis-acting elements, however, the gene for heat stress response between these cis-elements and no significant correlation.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os03g0854500 |
|---|---|
| Description |
Similar to Heat shock transcription factor 31 (Fragment) |
| Version |
NM_001058473.1 GI:115456674 GeneID:4334826 |
| Length |
3436 bp |
| Definition |
Oryza sativa Japonica Group Os03g0854500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:36839862..36843297 |
| Sequence Coding Region |
36839986..36840273,36841660..36842892 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:36839862..36843297 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:36839862..36843297 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatga</cdnaseq> |
| Protein Sequence |
<aaseq>MEAAVAAAAAAAGAVTTAVAPPPGAAVSNGVATAPPPFLMKTYE MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVD PDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEE IEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPG FLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMINEAAKAML RKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANSGLPYV ATSSGLSAICSTSTPQIQCPVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPD LQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAIIDS FWEQFLVASPLSVDNDEVDSGVLDQKETQQGNGWTKAENMANLTEQMGLLSSHHTG</aaseq> |
| Gene Sequence |
<dnaseqindica>125..412#1799..3031#aaattccccaccctcaaatccccccctacccacgggccccgatcccacgcctccccctaaccctacccatgctcacgctgtcgcgcccctgaccctcaccacgcctccccatacggatcgcctcatggaggccgccgttgctgctgcggctgcggccgccggggcggtgacgacggcggtcgcgcctccgcccggcgcggcggtcagcaacggggtggcgaccgcgccgccgccgttcctgatgaagacgtacgagatggtggacgacccggccaccgatgccgtcgtctcatggggccccgggaacaacagcttcgttgtgtggaacacccccgagttcgcgcgcgacctcctccccaagtacttcaagcacagcaacttctcctccttcgtcaggcagctcaacacctacgtacgtcccccccccccccccccccattcctctttcttcctactctactcaaaatacacaaggatccctccactattgctttagctgctttgggaagttatttcttacttcgcacaatccaccatcacgatacttactgctttcatttgctaccttcaatacttattggagactagttactccggattccattctttggtgacacacatatcgaccggctttaatactttccccttttggggcaccgtagatctggatgtcacctagggggattcataactctaatccagcacacttttagaccatctttaattctacagcacttgatacatcttatggttttgttaggccatcgtacctttattcatagttattcagtccaaaattttgaggtttcgtccccaaactacagcgtatatatttaatgagccaacatctatggcacttctgcagaggcttgactgtctctcttgaacaattacagtatgcacatcttaattcctcatgccttcttttaacaagaatgaaaaagttggtttttttgagtatgtacatcttacttgttcacgtcttctttaaacaagaatgaacaagttacacagagaacaaagcatcctcacgcgaagcaggtttaaatgctaaccgaaagctcatagtttcacgcacatatagatataggtattcttgttttgtcatcaattgtgcaactaccactgcttcaaaatcaccatctgtgatacctcctgtgaaggactgtctatttcaggtagacggtttttatgagatcgtttgtagtttgcacctttctgatgattgttgaaccagaagtaactacaccttaatggattaatgagcctatatgagatttgagtctgatcttttagaactttattaccaggcaagatagataactttcttcttgccgatataagtttttctcaagctgaattaacaaacacacggttgatatgtgcttttgcaactagcaatttattggtcctattcagttggctggggcctttatggcatttgcaaatatatctattacaccagtactgcttgtgcatcctgtggtagttttcttccctaatgtggccaatcagctgtttccttgtgaactacaaacagttttaagtgaatcatggacagtttgtactggttgtcttgtctgttttttctttggttcatcttttcttgatcctgctaatacactcagaatcacttaagccgaacagataaactgtgctatttacattagcccttctaatgatattactacttctgtaatcatataacactcagtcagaagtacttgtaccgggcagatacactgtgccatgtacgttagccggcctctaacgatctcattggtgcacttatgagcagggatttaggaaagttgatccagataggtgggagtttgcaaacgaaggttttcttagaggacaaaagcatctactgaagaccatcaacagaaggaaaccaactcatggaaacaaccaagttcagcagcctcagttgccagctgctcctgtacctgcttgcgtagaagtggggaagtttgggatggaagaagagattgagatgctcaaaagggataaaaatgttttaatgcaggaacttgtcaggctgagacaacaacagcagacaacagatcatcagctgcagactttgggcaagcgtcttcaaggaatggagcaacggcaacaacaaatgatgtctttcctggctaaggcaatgcatagtcctggcttcctagcacaatttgtacagcaaaacgaaaacagcagaagaagaatagttgctagtaacaaaaagaggaggctaccaaagcaggatggttcgttggactctgaaagtgcttcattggatggacaaatagtaaaatatcaacctatgatcaatgaagcagccaaagcgatgctaaggaagatcctaaagctagattcttcacatagatttgaatccatgggcaattcagataatttccttcttgagaattatatgccaaatggtcaaggtcttgacagctcttcatcaactcggaattctggtgttacccttgcagaggtcccagctaactcaggtttgccatatgtagctacaagctctggactttcagctatttgttcaacttcgactcctcagattcagtgcccagttgttttggacaacggcatacccaaagaagttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgatatcaatattctggaattcccagatttgcaagatatagtagctgaagaaaatgttgatattcctggagggggctttgaaatgcctggtcctgagggtgtattctctttgcctgaagaaggtgatgatagtgttcccattgagactgatgagattttgtacaacgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggctagccctctatctgttgataatgatgaagtcgattcaggtgtactagaccaaaaggaaacacaacaggggaatggatggaccaaagctgaaaacatggctaaccttacagaacagatgggcctcctgtcatcacaccatacaggatgatgaggtacaataggacatacttagccaccatttgtcaaggtaccctgggatctcggtaataaactcccacatcatcacctacccttatgtctatgttatgttctatcattttgctgaaacaatactgaaacgtcaccctatatgtgggaggatactaatcttccacctatgaaacacggtttacccgaggggtttacctgcttgtatctaggtttggcaggcgtaagaattgatcaatggtaacttgtcaaatctgtatgatagctactttgtgttgtagctactgatagctttttttttttgttcttgcctgctctatctgattgcaactaacttctggtagtactggcagtctgccacactgtattgattccaaaattaagtaactttgactgtttcagattc</dnaseqindica> |
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