Difference between revisions of "Os07g0164000"
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Guanchayuan (talk | contribs) m (→Function) |
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===Function=== | ===Function=== | ||
WAF1 is required for the stabilization of small RNAs through methylating the last nucleotide,as is Arabidopsis ''HEN1''. | WAF1 is required for the stabilization of small RNAs through methylating the last nucleotide,as is Arabidopsis ''HEN1''. | ||
| + | Stabilization of small RNAs by WAF1 is indispensable for rice development,especially for SAM maintenance and leaf morphogenesis governed by the ta-siRNA pathway. | ||
===Expression=== | ===Expression=== | ||
Revision as of 13:43, 9 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
WAF1 is required for the stabilization of small RNAs through methylating the last nucleotide,as is Arabidopsis HEN1. Stabilization of small RNAs by WAF1 is indispensable for rice development,especially for SAM maintenance and leaf morphogenesis governed by the ta-siRNA pathway.
Expression
The expression levels of target genes are not always negatively correlated with the miRNA accumulation levels in waf1.This is typically shown in the expression levels of HD-ZIP IIIgenes in WAF1,none of which showed enhanced expression in spite of the drastic reduction in miR166 accumulation.
Evolution
WAF1 is associated with multiple developmental events via the stabilization of many small RNAs.The phenotypic differences between rice WAF1 and Arabidopsis hen1 suggest that during evolution rice has acquired novel small RNAs and/or target genes that are regulated by WAF1.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os07g0164000 |
|---|---|
| Description |
Double-stranded RNA binding domain containing protein |
| Version |
NM_001065491.1 GI:115470714 GeneID:4342471 |
| Length |
5251 bp |
| Definition |
Oryza sativa Japonica Group Os07g0164000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 7:3461634..3466884 |
| Sequence Coding Region |
3461827..3462261,3462542..3462670,3462781..3462897,3462973..3463124,3463219..3463897 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008400:3461634..3466884 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008400:3461634..3466884 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttattgctcgcatatctggtttttttacagatgagaacttcccctcgtcatctcatcctcttattggccacatgtgtgtgacattcagaagaaccggggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgatatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctgtgtattctcgttctagttggaagggtctctctccacgagatcttctctgctcattttgtcgccttcacagactagcagagccctacttcgctgtcaataggtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgcgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaatgagttttctcatgacctttccaagatatctagagacaattgcttcttggagttctctgtaaaggtattgcaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaagagccttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacggctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtgattgagcacgtagaggaggaccaagcaagtttatgtggcgacgtcgtcttgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactga</cdnaseq> |
| Protein Sequence |
<aaseq>MPLRLRGGGGSKRGMPAAPTVTPKAVIHQKYGAKACYSVEEVRE AVDGGCPGLALPQQTRSVYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGIQP TANAPSTPEEAWDELIARISGFFTDENFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAI AACDVKVIGLCKLIDPKAEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEA VDLALQHWSGITDPIEVDGIFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSH AVVSRTVGKASSEIRLYFSAPNVQFVSEISHNVVSSLGDGYMESLINKRASFISGQTI YGDAILANVGYTRRDSELHTEDVTLSNYYRILLGKSPDGNYKISRDSILVAELPSVYS RSSWKGLSPRDLLCSFCRLHRLAEPYFAVNRCASDGKNDKENPDMFKCDVKIYSKKQE LLLEYSTADTWSKESDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDN FLHEFAMFLSIYGNRGGDDSSACSTVGSLSMDTSKQKLENNAVLAHIDGPDSGVFPSH GSLTCISYTASLVVKDKTNRYTLESNNEFEFEIGTGAVKNQIESCVSQLSVNQSACFI AELPPKDLILAAANEFSHDLSKISRDNCFLEFSVKVLQVTEPLEDRMEKALFNPPLSK QRVEFAVRYINELHATTLVDFGCGSGSLLDSLLEHPTTLEKVVGVDISRKGLTRAAKS LHQKLSKKSLMQTSVPTAVLYDGSITDFDSRLYRFDIGTCLEVIEHVEEDQASLCGDV VLSSFCPTVLIVSTPNYEYNPILQRSAMPNKEEEPEENAGPCKFRNHDHKFEWTRSQF QHWATGLAEKHNYSVEFSGVGGSGDEPGFASQIAVFRRMASGQDEVCQEGELHQPYEL LWEWPNASLPSH</aaseq> |
| Gene Sequence |
<dnaseqindica>4624..5058#4215..4343#3988..4104#3761..3912#2988..3666#2732..2909#2230..2478#1690..2147#1000..1092#193..483#cccacttcacccgactcctcgaatcctcctcgcctcgcttccgatttttctggggggtttagcgcctcccccaattcggcgaccaccccctcccgattccgcctcagttcctgcgtcgatcgattgcgaaaatccccttcgttaccaatcgcatttgtttgtttgtttttgtttgttttttttgggcgtttgatgccgttgcggctgagaggcggcgggggatcgaagcgagggatgccggcggcgccgacggtgacgcccaaggcggtgatccaccagaagtacggcgccaaggcgtgctacagcgtggaggaggtgcgggaggccgtcgacggcggctgccccggcctcgcgctgccgcagcagaccaggagcgtctaccgctgctcgctcgacatccccggcctcaccgtcgtcaccccgggcaccttcgtcaggaagaaggacgccgagcaagccgccgcgcagattgccctcgacaaggtattgatgagcattgtggtggtggcatgcaacttcacctttttttttttgctttacatgtgtagttgcaaaatcatcttccatatacatagagatttatcgtgtagcctttaagtttgtgattagatacggcgatatgcacaatgcacgattcagttagcaattgtgtctcacctatgaggaattgaggaatgtcacaagtgcaaggtggagttctctcaagtctcaaatagtcaaatctcaccttagtttggttattcaattcctgagtgagcacctaattgtgttgctcattgtctttgttgccatttcttttgatagtaccctctgttttctgttctgacaaaccaatgccatcgacgttagtgatcaagctgcacagtaacctagctcctttgtatttctctatcggataagctatgtacctatgatatatgaaatatcattactatgtgaaatgttgttcatgctgtggacctatggtgattaccatttcttttattgtcttcgttgtagcttggtattcagcccactgcaaatgctcccagtactcctgaagaagcatgggatgaacttattgctcgcatatctggtttttttacagatgaggttagtattttccacttgatcttggtgttgtgtcattgtagttcagggattaaggtgcacacaacagaaggctacagcaaaaggaagttttcatattcatgatgttacatatttgagtggaatgctatgctctgctggcaattgaggagtgtaatagggatataggatccttatgatgggctgtgtatgtcgtagggttgcatgatcataaccattgcaactcttataattggagttaagaaagactctgtattactggaattaagaggttatgggtatctatgtggtaaagagaccggaccatcgagcttactacaaaaaacatttcccttaaggctttgctttctatgtttctgcagtttcaacctgctttggtacacattcttctttacatagacatgtcacatgatcaccaaataccaatattgaagtctgaatcattttgtgtacacaagaatacaggattatagttgaagcatgcggctatataatcatattattattcagagcatcagatgtaactgaaaaacaattaatttgttctaaccgaccttttctaacatgtctgtcttttttttttcctactcttctattcagaacttcccctcgtcatctcatcctcttattggccacatgtgtgtgacattcagaagaaccggggaccgctttggtatgattcctatgtcagcaattgctgcatgtgatgtgaaggtcattggactgtgtaaacttattgaccccaaagcggagtttgatcctctcttggttttatcattaatctataatgctgccaaaaaatcccctggtgtctctgtcagtgatagcaacttctggatttggagtcagaagccttattcccctgaggctgttgatttggcacttcagcattggtctggcataacggatcccatagaagtagatgggatttttgttccttgtatgatggaggatgaacctaagacaataagacttactttatcacataatgaacattacatgggtgatatagtgtctaagctctctgcaagtgattcctcccacgctgttgtttcaaggtcagtattgtgccgagccttctcttctgaccattgtcattatttttggtgtgctgataatcttaaaattgtctcactgcagaactgttggcaaagcatcttctgagataaggctatatttctcagctccaaatgtgcaatttgtttctgagatatcacacaatgtggtttcttctcttggagatggctatatggagagcctaataaataagcgagcttccttcatttctggtcaaacaatttatggagatgcaattttggctaatgttggatatacaaggagagactcagagcttcatactgaagatgttaccttatccaactattacaggtatcgatttgttgattatgtcacttgtatgagatatattttgactttagtttaattcaatatgcatacttcattttttttataagaatcatctggttgtagatagatcttgatctgatttttcttcacactgtcatctactcgactactactcttccatcatttgaattgattttctctattgtttaggcacaccttctgttctcatcttagtttctaattcttctgaataacttgctttttggtaactcaggattcttctgggcaaatcaccagatgggaattacaagatatccagggattcaattctggtggcagagcttccatctgtgtattctcgttctagttggaagggtctctctccacgagatcttctctgctcattttgtcgccttcacagactagcagagccctacttcgctgtcaatagggtaagtgcctcttgtaaagtgttaggatcacctgtaagctccgaggagatggacgtgctaaagaatgctgaaaatcagtgtgctagtgatggaaagaatgacaaggaaaacccagatatgttcaaatgtgatgtcaaaatatattcaaagaagcaggagcttttattggagtattcgacagctgatacttggagcaaggaatctgatgccattcacaattcttcattgaaggtgttgatttggttctgtagttatttcaagcaaccgaacaagcatgtactgaagctctctcattctaagagcactgatggcttcacaatatgtccagataattttttgcatgaatttgccatgttcttatctatttatggcaacagaggaggtgatgactcaagtgcatgcagtacagttggatcgctttctatggatacctcaaaacaaaagcttgaaaacaatgcagttttagcacacattgatggtccagattctggtgtttttccatcccatggatcattgacttgcataagctatactgcttccttggtggtgaaggacaaaacaaacagatatacgctagaaagcaacaatgagtttgagtttgagatagggactggggctgttaagaatcagattgaatcatgcgtgagtcagctgtcagttaatcaaagcgcatgtttcatagctgaattgcctcctaaggatttgatccttgctgcagctaatgagttttctcatgacctttccaagatatctagaggtgaggtccaatcttaacacctcagtctgataattttcattaccagcttgaatttggctgaagcactatgctcaagttttaaccatccttgcagacaattgcttcttggagttctctgtaaaggtattgcaggtaactgaaccattagaagatagaatggaaaaagccttgtttaatcctcctttatctaaacaaagagtggaattcgctgttcggtacatcaatgagctgcatgctaccacattggtaaatattcttctcatcctacttccatatttgccaagcatattagcttatcactattgaagtaaatttgttcaggttgattttggctgtggatctggtagccttcttgattcattgcttgagcatccaacaacccttgaaaaagttgtcggtgttgacatttctcggaagggtctcacacgagcagcaaaggcacgtaacagagccttgatgactgttgatagttagttcaccctttaaaccatcccttttgttctctccaatgcttggcaatgactcctttcatctctctgaatttgcagagccttcatcagaagctgagcaagaaatcgttgatgcagacaagtgttccaacggctgtgctctatgatggttctataacggattttgattctcgcttatacagatttgacattggcacttgtcttgaggtcagttactcctgaactgtttctgctgtcttctcaattgcctctagtacatggataccacgattaattgattggattaagaatcacatagcctaatcacatttgtatagtagtacaatgggaagtccatccttagaaatgctgatgtggattcattattttgttcatagtagtacagtgggaagtccatccttacaaatgctgatgtggatttctctttgatctctcaaacgttagatttagttggacatgctattcgactgaccaaagctacttgcaggtgattgagcacgtagaggaggaccaagcaagtttatgtggcgacgtcgtcttgagttcgttctgccctacggtgctgattgtttcaacacccaactatgaatacaaccctatcctccagagatcagctatgccaaacaaggaagaagaaccagaagaaaacgctggtccttgcaagttccgaaaccatgaccacaagttcgagtggacaagatcccagttccagcactgggctaccggactcgcagaaaagcacaactacagcgtcgagttcagtggcgttggcggatcaggcgatgaaccaggcttcgcttcccagatcgctgtcttcagaagaatggcgtcgggtcaagatgaggtttgccaggagggagagctgcatcaaccttatgagcttctctgggaatggccaaatgcatcgttgccatctcactgagttcttgtggtagggagacacgacaactctattaactcttcaccatgcttgtaactgagatggagattctgattagtactgtagttggcattaacttgtcgtcagtaggaaactcaactcaagatcgtgtccccggatgttggtgggttaatgccttgggctgtgttctaaagtcaatgttgccaatttcacc</dnaseqindica> 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