Difference between revisions of "Os01g0571300"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | *''HsfAs'' not only responded to high temperature but also to oxidative stress, high salinity, chilling and other stresses<ref name="ref1"/><ref name="ref2"/><ref name="ref3"/><ref name="ref4"/><ref name="ref5"/><ref name="ref6"/><ref name="ref7"/>. | |
| + | *''OsHsfA7'' has an important role in root growth and development. ''OsHsfA7'' may play a role as a member of natural defense system against high salinity and drought stresses<ref name="ref2"/>. | ||
| + | *''OSHsfA5'' and ''OSHsfA7'' transcripts were at correspondingly low levels in all tissues; while transcript levels of ''OSHsfA5'' were lower in roots, those of ''OSHsfA7'' were slightly higher in leaves<ref name="ref4"/>. | ||
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| + | '''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0004672 GO:0004672], [http://amigo.geneontology.org/amigo/term/GO:0004674 GO:0004674], [http://amigo.geneontology.org/amigo/term/GO:0006468 GO:0006468], [http://amigo.geneontology.org/amigo/term/GO:0005524 GO:0005524] | ||
===Mutation=== | ===Mutation=== | ||
Revision as of 12:10, 26 December 2014
OsHsfA7 is a number of heat shock protein (HSP) genes in rice, which play an important role in plant stress tolerance and mainly regulated by heat shock transcription factors (Hsfs) [1][2].
Contents
Annotated Information
Function
- HsfAs not only responded to high temperature but also to oxidative stress, high salinity, chilling and other stresses[1][2][3][4][5][6][7].
- OsHsfA7 has an important role in root growth and development. OsHsfA7 may play a role as a member of natural defense system against high salinity and drought stresses[2].
- OSHsfA5 and OSHsfA7 transcripts were at correspondingly low levels in all tissues; while transcript levels of OSHsfA5 were lower in roots, those of OSHsfA7 were slightly higher in leaves[4].
GO assignment(s): GO:0004672, GO:0004674, GO:0006468, GO:0005524
Mutation
Expression
Please input expression information here.
Evolution
Please input evolution information here.
Knowledge Extension
Labs working on this gene
- Key Laboratory for Crop Germplasm Innovation and Utilization of Hunan Province, Hunan Agricultural University
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, China
- Department of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi 110 021, India
- Division of Health Sciences, Graduate School of Medical Science, Kanazawa University, Japan
- Crop Gene Engineering Key Laboratory of Hunan Province, Hunan Agricultural University, Furong District, Room 420, Life Science Building, Changsha (410128)
- Institute of Rice Science, Hunan Agricultural University, Changsha, 410128
- Directorate of Rice Research, Hyderabad, Andhra Pradesh, India
- Centre for Biotechnology, Institute of Science & Technology, Jawaharlal Nehru Technological University, Hyderabad, India
- Crop Gene Engineering Key Laboratory of Hunan Province, Hunan Agricultural University, Changsha City, Hunan Province, China
References
- ↑ 1.0 1.1 Chauhan H, Khurana N, Agarwal P, et al. Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress[J]. Molecular Genetics and Genomics, 2011, 286(2): 171-187.
- ↑ 2.0 2.1 2.2 Liu A L, Liu C F, Zhang X W, et al. BMB Reports: Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice[J]. Biochemistry and Molecular Biology Reports, 2013, 46(1): 31-36.
- ↑ Mittal D, Enoki Y, Lavania D, et al. Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.)[J]. FEBS Journal, 2011, 278(17): 3076-3085.
- ↑ 4.0 4.1 Liu A, Zou J, Zhang X, et al. Transcriptional Profiling of Class A Rice Heat Stress Transcription Factor Genes (OsHsfAs) under Abiotic Stress[J].
- ↑ Sailaja B, Anjum N, Prasanth V V, et al. Comparative Study of Susceptible and Tolerant Genotype Reveals Efficient Recovery and Root System Contributes to Heat Stress Tolerance in Rice[J]. Plant Molecular Biology Reporter, 2014: 1-13.
- ↑ Liu A L, Zou J, Zhang X W, et al. Expression profiles of class A rice heat shock transcription factor genes under abiotic stresses[J]. Journal of Plant Biology, 2010, 53(2): 142-149.
- ↑ Mittal D, Chakrabarti S, Sarkar A, et al. Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses[J]. Plant Physiology and Biochemistry, 2009, 47(9): 785-795.
Structured Information
| Gene Name |
Os01g0571300 |
|---|---|
| Description |
Similar to Heat shock transcription factor 31 (Fragment) |
| Version |
NM_001049913.1 GI:115437775 GeneID:4326351 |
| Length |
2933 bp |
| Definition |
Oryza sativa Japonica Group Os01g0571300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:23595710..23598642 |
| Sequence Coding Region |
23595711..23596172,23597579..23598325 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:23595710..23598642 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:23595710..23598642 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgcttaaaccccaaacacctcgcgctcgccgcgccgcgcatcccaattcccacatggcgtcctcctcctcctcctcctccctctgccgactactcatccccaggccgaccacccgccgcttctccggaggaggaggggaggggggaatggcggcggcggcgccggtgaagcgggaggtgaagcccgaggcgggggaggggtggggcgggggtgatctgggggtggtgccgccgccgccgcggccgatggaggggctcggggaggcggggccggcgccgttcgtggcgaagacgtacgagatggtggcggacgcggccaccgacgcggtggtgtcgtgggggcccggcggctcgggggcctccttcgtggtgtgggacccgcacgcgctcgccgccggcgtgctcccgcgcttcttcaagcacgccaacttctcctccttcgttcgccagctcaacacctacgggttccgaaaggtcactccagatcggtgggagtttgcaaatgaagccttcttagctggtcagaagcatttgctgaaaaacatcaagaggaggcgtgtttccaagcctctcgtggattcacaactaagaaataaagcaagtgttgtttttggacagcctgaggctcctggtgaggttgtgagcttgaagagagaccgtgcagccctcagagctgaggtcatcatgcttaagcagcagtacaacgcctgtaaatctcagctcattgccatggaggagatggtccgcaacatcgagagaaggcaacagcagaccatcggcttctttgccaaggtactcaccaacccggctttcgtgcagcaggttctactcaactatgtgaataagaatggcctaagaggcgccgcgaaaagacaacggctgatggaaaacgaagaacagcatgctgattcgccattgaacaaaggtatggaagctgcatctgtgatggaagctgatgtttctccagggagcactggctgtggcacagttgggaaagtggagaccactccaatgtgcaatttccagaatattgagaatatgtgtgatgatgtctgggaagagctggacgccttacctgaaactggaatggagcaggaagaaaaggctgggattggctccttcgatgtcgaggagttcgtcggaaggccttgtggttgggttgatgactgcccataccttgtggagccgatgcagttcgtggaacactag</cdnaseq> |
| Protein Sequence |
<aaseq>MLKPQTPRARRAAHPNSHMASSSSSSSLCRLLIPRPTTRRFSGG GGEGGMAAAAPVKREVKPEAGEGWGGGDLGVVPPPPRPMEGLGEAGPAPFVAKTYEMV ADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVT PDRWEFANEAFLAGQKHLLKNIKRRRVSKPLVDSQLRNKASVVFGQPEAPGEVVSLKR DRAALRAEVIMLKQQYNACKSQLIAMEEMVRNIERRQQQTIGFFAKVLTNPAFVQQVL LNYVNKNGLRGAAKRQRLMENEEQHADSPLNKGMEAASVMEADVSPGSTGCGTVGKVE TTPMCNFQNIENMCDDVWEELDALPETGMEQEEKAGIGSFDVEEFVGRPCGWVDDCPY LVEPMQFVEH</aaseq> |
| Gene Sequence |
<dnaseqindica>2..463#1870..2616#aatgcttaaaccccaaacacctcgcgctcgccgcgccgcgcatcccaattcccacatggcgtcctcctcctcctcctcctccctctgccgactactcatccccaggccgaccacccgccgcttctccggaggaggaggggaggggggaatggcggcggcggcgccggtgaagcgggaggtgaagcccgaggcgggggaggggtggggcgggggtgatctgggggtggtgccgccgccgccgcggccgatggaggggctcggggaggcggggccggcgccgttcgtggcgaagacgtacgagatggtggcggacgcggccaccgacgcggtggtgtcgtgggggcccggcggctcgggggcctccttcgtggtgtgggacccgcacgcgctcgccgccggcgtgctcccgcgcttcttcaagcacgccaacttctcctccttcgttcgccagctcaacacctacgtacgtatcccaatcgcccgatctgctgcttgtggtgtgggtggtgttctttctgtgaaccgctgatcggtctcgtgtgcttctgtttcccgtgtaaattgaatcgttgatgctggtgagacaatagttgttagttgatcgaacaagataactgattatgagaatgaaatttgaaaaggagtgataccaaattcgtgggaaatccttgctgcgtttccgtactaatcaagaatcgtatcatgtatgaactggtactgtcctatgctgtggtttgttcgtgtccacgaatgcgctcgcatatacaatatcctgttttgtcaaaattggtgataatagcaggagaattctagaagtttgaccagaatttaaaaatcatgcctaaattggttaatattggactgcaaatggtatagaaccatcccttgtatatacaattttgttccacctctagtttaggatggtgcataccagaaattttgtcttaccaagaaactgaaatcctcagccatgtttttgtaggatgctgaatgttcagtggtggtatacttgtattgtacgatgcaaagtcatgctagttacttgcatccatctgtactacgggacaaatgtttgtcttggtttttagcccctttgtgatgatgcacttggattggatttcatctgctccactgtcactggatatgacctatgttctgtctgttcacgttgcaatccaagatactgatccctaaaatacttaaagtggataatattccttcttgtgggcattacaagtgtccaggtagctcgtatgtcgtactcgaaatcttgaagtctttttccaccactctgaaagacctaatacctcatgacctgtccatacctttaatagttaaaagggaaaggtgatggtaacatgatctaggtgaactatgctcccccactttttcttttgtcttttttgatgatgtggagctccgtgcttttgtacatacatgagcttatctgattcaatgagctacagaagtacagaacagttaccttgttcttgtcaatgagcttatctagcagtgtgttctcggttatttggcctgtttgtgtttattgctaatggcaccaccattcttgctgttttgatattatctatatacttttcttgctgtaaatagacatttcatatcaggcaactgaaccttctagcttctgggtaatgctggtcctgtggttcaacggtagaacacagaagtgaaattgctagtttaatctctgatagactaaaaccatagactgattcttttgttaatatgcgtatacctaccattgacagttttcaatccctaaatactgctgactttctagactgggtttggttccctgcagctgcttctagaaaaacttaccggcctctacctgttgttgctatgcaggggttccgaaaggtcactccagatcggtgggagtttgcaaatgaagccttcttagctggtcagaagcatttgctgaaaaacatcaagaggaggcgtgtttccaagcctctcgtggattcacaactaagaaataaagcaagtgttgtttttggacagcctgaggctcctggtgaggttgtgagcttgaagagagaccgtgcagccctcagagctgaggtcatcatgcttaagcagcagtacaacgcctgtaaatctcagctcattgccatggaggagatggtccgcaacatcgagagaaggcaacagcagaccatcggcttctttgccaaggtactcaccaacccggctttcgtgcagcaggttctactcaactatgtgaataagaatggcctaagaggcgccgcgaaaagacaacggctgatggaaaacgaagaacagcatgctgattcgccattgaacaaaggtatggaagctgcatctgtgatggaagctgatgtttctccagggagcactggctgtggcacagttgggaaagtggagaccactccaatgtgcaatttccagaatattgagaatatgtgtgatgatgtctgggaagagctggacgccttacctgaaactggaatggagcaggaagaaaaggctgggattggctccttcgatgtcgaggagttcgtcggaaggccttgtggttgggttgatgactgcccataccttgtggagccgatgcagttcgtggaacactagaggcatgagaagaatacaatctgtccttagaatagtggaacgtgtttataacgtctgaatatctgtatatcaattacccacttcgatagaagtctgtactatgaatagcataagctcctggaacagagcttaaatataggaaacgaacactctcaggtaatgcaagccaggagtttgtaggattgaagatttgttactgtaaattctgctgggcgcagcaaaaaaatcgtgatgttagatatacaatactgtctctgcaatgtagccgaggaaaaatacgaatgccagtcttatcaatgtgaatactttatactgtt</dnaseqindica> |
| External Link(s) |
