Difference between revisions of "Os11g0648000"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | [[File: OsNHX3 Genomic organization.jpg|right|thumb|300px|'''Figure 1.''''' Genomic organization of the OsNHX3 genes.(from reference <ref name="ref1"/>).'']] | |
| + | *''OsNHX3'' can suppress the Na<sup>+</sup>, Li<sup>+</sup>, and hygromycin sensitivity of yeast ''nhx1'' mutants and their sensitivity to a high K<sup>+</sup> concentration. The expression of [[Os07g0666900|''OsNHX1'']], [[Os05g0148600|''OsNHX2'']], ''OsNHX3'', and [[Os09g0286400|''OsNHX5'']] is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA<ref name="ref1"/>. | ||
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| + | *The genomic organization of OsNHX3 is graphically presented in Figure 1. ''OsNHX3'' had 15 exons<ref name="ref1"/>. | ||
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| + | '''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0006814 GO:0006814], [http://amigo.geneontology.org/amigo/term/GO:0006885 GO:0006885], [http://amigo.geneontology.org/amigo/term/GO:0015299 GO:0015299], [http://amigo.geneontology.org/amigo/term/GO:0015385 GO:0015385], [http://amigo.geneontology.org/amigo/term/GO:0016021 GO:0016021] | ||
===Expression=== | ===Expression=== | ||
Revision as of 08:44, 10 January 2015
OsNHX3(Os11g0648000), is a Na+and H+exchanger in rice (Oryza sativa)[1].
Contents
Annotated Information
Function
- OsNHX3 can suppress the Na+, Li+, and hygromycin sensitivity of yeast nhx1 mutants and their sensitivity to a high K+ concentration. The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA[1].
- The genomic organization of OsNHX3 is graphically presented in Figure 1. OsNHX3 had 15 exons[1].
GO assignment(s): GO:0006814, GO:0006885, GO:0015299, GO:0015385, GO:0016021
Expression
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Evolution
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You can also add sub-section(s) at will.
Knowledge Extension
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os11g0648000 |
|---|---|
| Description |
Similar to Na+/H+ antiporter |
| Version |
NM_001074903.1 GI:115486454 GeneID:4351027 |
| Length |
4072 bp |
| Definition |
Oryza sativa Japonica Group Os11g0648000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 11:27611114..27615185 |
| Sequence Coding Region |
27611400..27611741,27611875..27611958,27612174..27612236,27612323..27612461,27612565..27612672 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008404:27611114..27615185 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008404:27611114..27615185 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggagctcgggttggggatggggatggggctgggcgacccgcctgcggactacggctcgatcgcggcggtggggatgttcgtggcgctcatctgcgtctgcatcgtcgtcggccacctcctcgaggagagccgatggatgaacgagtccatcaccgcgctaatcatcgggttgggtactggaggagtgattttgatggtgtcgagctggaagcactcgcgcatactggtgttcagcgaggatctcttcttcatttacctgctcccgccgatcatattcaatgcggggttccaagttaagaagaaacaatttttccgcaacttcatgactattacgttgtttggtgcgattgggaccctaatctctttcagtgtaatttccctcggttctctaggactaatatcaaggctgaacataggttcccttgatcttggagattatcttgcacttggggcaatattctcggcaacagactctgtatgcaccttgcaggttttgaaccaagatgaaacacccttcttgtacagcctggttttcggggaaggtgttgtcaatgatgcaacatcagttgtgctattcaacgcaatgcagaactttgatcttgcaaatttcagcagtgttaaattcttgcaattcattggcaattttctttatctgtttgccacgagcacctttcttggagttgctgctggacttctcagtgcttatatcataaaaaagctgtacttcggcaggcattccactgatcgtgaagtttctattatgatgctcatggcttacttgtcttacatgcttgctgaattgcttgatttgagtggtattcttacggtgttcttctgtggtattgtaatgtcgcactatacctggcataatgtaacagagagttccagggtcacaaccaagcacgccttcgccacattgtcatttatcgccgagacatttctatttctttatgttggtatggatgcattggatatggagaagtggaagattgtcggtgaaacattcagcccaatgaaatctattgctttgagctccactattttgttcttggtgctggtcgcaagagctgcttttgttttcccactatcttttttggcaaatttgaccaaaaaaactgaagagggaaagatctctattaagcagcaagttattatttggtgggcgggtctgatgagaggtgctgtgtccattgcattggcctacaacaagttcacaaggtcaggccacactcaactccctagtaatgctatcatgatcactagtacaatcactgttgttcttttcagcacgatggtctttgggctcctgactaagccattaatcagactcctaattccagcaagacacctcaaccgggaatcgagtgcgctttcggatccacctagcccgaaatccttccttgatccactgatcctgaacggttccgatgtcgatcctgagattggtgtgggcattcgccgaccgacaagcctccgacttctcctagcaagcccgacacagtcggtccaccattactggcgcaagttcgacaacgccttcatgaggccggtgtttgggggccgaggattcgtccccttcgtccccggctcaccaactgaaaggagtgtgccattactccagggaaatgagaactag</cdnaseq> |
| Protein Sequence |
<aaseq>MELGLGMGMGLGDPPADYGSIAAVGMFVALICVCIVVGHLLEES RWMNESITALIIGLGTGGVILMVSSWKHSRILVFSEDLFFIYLLPPIIFNAGFQVKKK QFFRNFMTITLFGAIGTLISFSVISLGSLGLISRLNIGSLDLGDYLALGAIFSATDSV CTLQVLNQDETPFLYSLVFGEGVVNDATSVVLFNAMQNFDLANFSSVKFLQFIGNFLY LFATSTFLGVAAGLLSAYIIKKLYFGRHSTDREVSIMMLMAYLSYMLAELLDLSGILT VFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAETFLFLYVGMDALDMEKWKIVGE TFSPMKSIALSSTILFLVLVARAAFVFPLSFLANLTKKTEEGKISIKQQVIIWWAGLM RGAVSIALAYNKFTRSGHTQLPSNAIMITSTITVVLFSTMVFGLLTKPLIRLLIPARH LNRESSALSDPPSPKSFLDPLILNGSDVDPEIGVGIRRPTSLRLLLASPTQSVHHYWR KFDNAFMRPVFGGRGFVPFVPGSPTERSVPLLQGNEN</aaseq> |
| Gene Sequence |
<dnaseqindica>3445..3786#3228..3311#2950..3012#2725..2863#2514..2621#2283..2383#2106..2172#1959..2005#1642..1883#1490..1549#1314..1411#692..810#406..573#atactatctcgaaacgataaaaaagagcacaaattcttctcctgttagtaattctgttcgaattcctctccttccccaaaaaagagtggagttcatctccgccacgcggggttaccgataaaaatcccccaaatttccgctcccaccccgtcggattctcccccgaatccgagagttcatcgttttccgccgatttattttatctggttttgtaaaccagcagcccaattgctctctgccttcgtctacctcgtggaagattccgggtcaaattctagactttttggtgggttgcgtgcgaggggtggaggttgcttcgaaggcaagcgttggggggggggggggggattggattttgaggagggagggagggagtagggtttggtaattggaggaggtggagtaatggagctcgggttggggatggggatggggctgggcgacccgcctgcggactacggctcgatcgcggcggtggggatgttcgtggcgctcatctgcgtctgcatcgtcgtcggccacctcctcgaggagagccgatggatgaacgagtccatcaccgcgctaatcatcgtgagtcgatgagttcttgttgagttgtgctgtttattatgtgagattttgggagatgatggtggttttcgtttggtgtttgattgtttgtggtgtgtgtgtctggggtttcttgcaggggttgggtactggaggagtgattttgatggtgtcgagctggaagcactcgcgcatactggtgttcagcgaggatctcttcttcatttacctgctcccgccgatcatattcaatgcggggtaagctgtttcatgtgaattaagattgtgctatcatggtgatgattttctttataattagagtcgtctttgcaaaagtagtgagtgataaggaagaaaatatgcaggggcaattagttgtgagttccatgctggaacgtgatataattgggttgttactaaatggagctgctattgcttctctctttgaaattatcatgctaattaaggcaatatcacttatgagatgtatgcgtttttgtagtacacgtaaattgtgcctcttcagttctgtagtaggagtatttggaatgggaaattttacttttccacttctttgtatcaaactgattttgctaattaaggtacacctagctatcaaatgcatacacatagtgcacattattatagcaattaaactctctaatcttccagtaggaaattctgttacatcatttaaagtttaacattagtcagcaaggtgaagcttactgttcctttttttctctttctttcctgagcaggttccaagttaagaagaaacaatttttccgcaacttcatgactattacgttgtttggtgcgattgggaccctaatctctttcagtgtaatttccctcggtaagttgttttcctctttaaattttacctggcatgttcttttgtgctcatctctctcactcgtacattccatcacaggttctctaggactaatatcaaggctgaacataggttcccttgatcttggagattatcttggtcagttcttatatgaacctaatgcgtaagcatttcgattgcatgcctgtggttctgtgttttgacttgttccgcatgtgaacttttttcagcacttggggcaatattctcggcaacagactctgtatgcaccttgcaggttttgaaccaagatgaaacacccttcttgtacagcctggttttcggggaaggtgttgtcaatgatgcaacatcagttgtgctattcaacgcaatgcagaactttgatcttgcaaatttcagcagtgttaaattcttgcaattcattggcaattttctttatctgtttgccacgagcacctttcttggagttgctgtaagttctttcctgctcactccaatctttatctttgtcaatgtttctttttcctaaagcatgatatgactgcaggctggacttctcagtgcttatatcataaaaaagctgtacttcggcaggtttgtacaacacaccacattatgtggttgatatttgtatgatcaatcaccagacattttataataattctctaatccatgaattataccttcaatccaggcattccactgatcgtgaagtttctattatgatgctcatggcttacttgtcttacatgcttgctgaagtaagcaccctgtactattagcatcatatagatcctgcagatttgagcaatgtcagctaaatttaattgtaatggataatctgatattaacctgtttctttttgtggcagttgcttgatttgagtggtattcttacggtgttcttctgtggtattgtaatgtcgcactatacctggcataatgtaacagagagttccagggtcacaaccaagtaagtatctttatggtttgtttcagcaaacttattattccattttcatttttttaacttgatgatttcaaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctataggcacgccttcgccacattgtcatttatcgccgagacatttctatttctttatgttggtatggatgcattggatatggagaagtggaagattgtcggtgaaacattcaggtatgctctctgtgggtgtgggaagtaaccatatatgttgttcagttgcccaattaatagataataattgtaatatgtgtaacatatttcttatcctgtgcagcccaatgaaatctattgctttgagctccactattttgttcttggtgctggtcgcaagagctgcttttgttttcccactatcttttttggcaaatttgaccaaaaaaactgaagagggaaagatctctattaagcagcaagtgagtgttttatttagcagcatcttaggcttgctatcttctcttataaggggactttcaggttacttatgatgtgggttattcaggttattatttggtgggcgggtctgatgagaggtgctgtgtccattgcattggcctacaacaaggtaacatttgatctgttcgacctgtgctttagcttgtacaagtttgtgtgatcttgaaatttcatatttgactggctgcttgataaagacacgtgcagcttgcctgtttataaactaacttgtttgaggctggattttttttgtttgctttcgtgtattaactattgttcgtaattcatgctttgatctgaaacttgtcacttcgacacttgcagttcacaaggtcaggccacactcaactccctagtaatgctatcatgatcactagtacaatcactgttgttcttttcagcacgatggtaagttctctctcaaacaaacacaaccctgtgcaatacatccttcggttcaaagggagacagtatgaaagctgatccctgaacaattccacaagttggttctgataaaatcatctctcttatgttccctcaggtctttgggctcctgactaagccattaatcagactcctaattccagcaagacacctcaaccgggaatcgagtgcgctttcggatccacctagcccgaaatccttccttgatccactgatcctgaacggttccgatgtcgatcctgagattggtgtgggcattcgccgaccgacaagcctccgacttctcctagcaagcccgacacagtcggtccaccattactggcgcaagttcgacaacgccttcatgaggccggtgtttgggggccgaggattcgtccccttcgtccccggctcaccaactgaaaggagtgtgccattactccagggaaatgagaactagaaaactttttcaaaggagcgtgccattactccagggaaatgagagctagaaaacataaacaaaggttgtgtaaatctgaggtagaagaacaatcagcaaacacagtttctgtaaatttatctgaggtagtaacagcgttcttggtagctgtggtacatgctgatgtgttatgtacctaatattgtagatagcatggatgtatatatataaagcctctgtagtttagcaagaaatggtgctgaaaattttgccacgatttatacaatatggtatgatttttgcattc</dnaseqindica> |
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