Difference between revisions of "Os09g0286400"

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==Annotated Information==
 
==Annotated Information==
 
===Function===
 
===Function===
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Please input function information here.
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[[File: OsNHX5 Genomic organization.jpg|right|thumb|350px|'''Figure 1.''''' Genomic organization of the OsNHX5 genes.(from reference <ref name="ref1"/>).'']]
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*The genomic organization of ''OsNHX5'' is graphically presented in Figure 1. ''OsNHX5'' had 22 exons<ref name="ref1"/>
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*OsNHX expression was also enhanced under submergence, and the levels of ''[[Os07g0666900|''OsNHX1'']]'' and ''OsNHX5'' transcripts agreed well with those of seedling vigor under submergence<ref name="ref2"/>.
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*[[Os07g0666900|''OsNHX1'']], [[Os05g0148600|''OsNHX2'']], [[Os11g0648000|''OsNHX3'']], and ''OsNHX5'' can suppress the Na<sup>+</sup>, Li<sup>+</sup>, and hygromycin sensitivity of yeast nhx1 mutants and their sensitivity to a high K<sup>+</sup> concentration. The expression of ''OsNHX1'', ''OsNHX2'', ''OsNHX3'', and ''OsNHX5'' is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA<ref name="ref1"/>.
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*''OsNHX1'' and ''OsNHX5'' play different roles in these rice tissues, although the antiporters cooperate in most tissues<ref name="ref1"/>.
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'''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0006814 GO:0006814], [http://amigo.geneontology.org/amigo/term/GO:0006885 GO:0006885], [http://amigo.geneontology.org/amigo/term/GO:0015299 GO:0015299], [http://amigo.geneontology.org/amigo/term/GO:0015385 GO:0015385], [http://amigo.geneontology.org/amigo/term/GO:0016021 GO:0016021]
  
 
===Expression===
 
===Expression===

Revision as of 12:53, 10 January 2015

OsNHX5(Os09g0286400), is a Na+‡and H+‡exchanger in rice (Oryza sativa)[1][2].

Annotated Information

Function

Figure 1. Genomic organization of the OsNHX5 genes.(from reference [1]).
  • The genomic organization of OsNHX5 is graphically presented in Figure 1. OsNHX5 had 22 exons[1]
  • OsNHX expression was also enhanced under submergence, and the levels of OsNHX1 and OsNHX5 transcripts agreed well with those of seedling vigor under submergence[2].
  • OsNHX1, OsNHX2, OsNHX3, and OsNHX5 can suppress the Na+, Li+, and hygromycin sensitivity of yeast nhx1 mutants and their sensitivity to a high K+ concentration. The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA[1].
  • OsNHX1 and OsNHX5 play different roles in these rice tissues, although the antiporters cooperate in most tissues[1].

GO assignment(s): GO:0006814, GO:0006885, GO:0015299, GO:0015385, GO:0016021

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.


Knowledge Extension

Labs working on this gene

Please input related labs here.

References

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Structured Information

Gene Name

Os09g0286400

Description

Sodium/hydrogen exchanger subfamily protein

Version

NM_001069315.1 GI:115478369 GeneID:4346626

Length

9242 bp

Definition

Oryza sativa Japonica Group Os09g0286400, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:6940039..6949280

Sequence Coding Region

6940462..6940505,6940711..6940793,6940877..6940974,6941284..6941361,6941791..6941900
,6941983..6942080,6942821..6942840,6942938..6943013,6943099..6943196
,6943303..6943363,6943438..6943485,6943588..6943619,6944078..6944106
,6944590..6944687,6944760..6944779,6944867..6944929,6946421..6946532
,6946611..6946696,6946772..6946796,6946893..6946952,6947142..6947193
,6948934..6949150

Expression

GEO Profiles:Os09g0286400

Genome Context

<gbrowseImage1> name=NC_008402:6940039..6949280 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:6940039..6949280 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctggagctgagcctggtgtccgcttcgccccctggtgggctggcggcgagcccgcccccgcccgccgccatcccggggaaggagcagcaggtggccggggtggggatcctgctgcagatctccatgctcgtgctctccttcgtgctcggccacgtcctccgccgccaccggttctactacctccccgaggccagcgcgtctctcctcatcggtctagttgtcggtgggcttgctaatatttcaaatacagagaccaacactaggatgtggttcaacttccatgacgaatttttcttcttgttcttattgcctccaataatattccaatcaggattcagtctatccccaaaaccattctttgcaaattttggggctattgtaacttttgccatccttgggacattcattgcttctgttgtaacaggagttctcgtctatcttggtgggttgacatttctaatgtacaaacttccatttgttgagtgcctcatgttcggtgctcttatatctgcaactgatcctgtcactgtgttatcaatattccaggagctgggcactgatgttaacttgtatgctcttgtgtttggagaatctgttctaaatgatgcgatggcgatttcgctttacaggacaatgtcattggtcagaagtcaagcagcagctggggagaacttctttatgatggttttccagttccttgagacctttgttggttcattgtcatcaggtgttggagttggatttatctctgctcttctgtttaagtatgctggactggatattgacaatcttcaaaacttggagtgctgcctttttgttctcttcccatacttctcgtatatgttagcagaaggacttgggttgtcaggaattgtttccatactattcacaggaatggttatgaagcactatacattttccaatctctcaaacaactctcagcgcttcgtttctgccttctttcacttgctgtcatctttagcagaaacatttgtgttcatttatatgggctttgatattgccatggaagaacatagctggtctcatgtgggcttcatattcttctcaattatatttataatcattgcaagggcagtaaatgtcttttcttgtgcatatttggttaacatgtcacggccagaacatcgacgcatacctctaaagcatcagaaagcactttggtttagtgggcttagaggggccatggcttttgcacttgctctccaatctgccaatgaacttcctggaggacatggaaaaacaatattcacaaccaccacagctattgttgttttaacggtacttcttatcggaggatcgacgggcaccatgctggaagctttggatgtaattggtgatgaaaacagatcaatagaaaattatgacgacaacaatggttacatccccccaacgtatgaggaaggttcatcatctggaggaggattaagaatgaaactgaaggaattccacaaaagcacgacatcgttcactgcccttgacaggaactatctgactccatttttcaccagtcaaactgatgaggatgatgatgtcttcggtgaacaaccccaaaaccagagacgcggattctatgaccaatag</cdnaseq>

Protein Sequence

<aaseq>MALELSLVSASPPGGLAASPPPPAAIPGKEQQVAGVGILLQISM LVLSFVLGHVLRRHRFYYLPEASASLLIGLVVGGLANISNTETNTRMWFNFHDEFFFL FLLPPIIFQSGFSLSPKPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLMYKLP FVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVR SQAAAGENFFMMVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVL FPYFSYMLAEGLGLSGIVSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFV FIYMGFDIAMEEHSWSHVGFIFFSIIFIIIARAVNVFSCAYLVNMSRPEHRRIPLKHQ KALWFSGLRGAMAFALALQSANELPGGHGKTIFTTTTAIVVLTVLLIGGSTGTMLEAL DVIGDENRSIENYDDNNGYIPPTYEEGSSSGGGLRMKLKEFHKSTTSFTALDRNYLTP FFTSQTDEDDDVFGEQPQNQRRGFYDQ</aaseq>

Gene Sequence

<dnaseqindica>8776..8819#8488..8570#8307..8404#7920..7997#7381..7490#7201..7298#6441..6460#6268..6343#6085..6182#5918..5978#5796..5843#5662..5693#5175..5203#4594..4691#4502..4521#4352..4414#2749..2860#2585..2670#2485..2509#2329..2388#2088..2139#131..347#gctttcccccccgcgagccttctggaagaagcacgcatcgattgaccgcgaccgacctcgccgccggcgaccgtacggattccgcccctccccgccgcggcggcggcaccaccggggcgcgcgcgccgggatggcgctggagctgagcctggtgtccgcttcgccccctggtgggctggcggcgagcccgcccccgcccgccgccatcccggggaaggagcagcaggtggccggggtggggatcctgctgcagatctccatgctcgtgctctccttcgtgctcggccacgtcctccgccgccaccggttctactacctccccgaggccagcgcgtctctcctcatcggtacgtacgcgcgctacgaattgatcgtgcgagtcgcaaaccctagctgtcaaggatcgtttcgtttatagagtttggattagtttgttgaggtgattattggtttgtgggatttagaaattagaagtgggatgttcagatggagatggtatggggattgatgcatgtttccgatgccctgcaaatactgtgaagggttggaattcagtgccattctaggtgaaatgcgaaaatgagccgggatcatgctaataatgtagataattcattttgtctgcctttgcctctgtggtagcttttctacaagaaacttaattctagatgaaattttcagcgaaatgagaagggatcatactattaatgcagatgattcatttaggagatgctgcatggtagcacttaatttgtctacctttgtaccccatttattgggatacacaattctttcgagccatggcatcataatattaggtcccgtttgtttccactacaaagagtggataaagttttggatattcgtggcacgcttttcaaactgctaaacggtgcgtttcgtgcgaaaactttctatatgaaggttgctctaaaatattagattaatatatttttcaagtttgtaataattaaaacttaattaatcatacgttaataccacctcgttttgggtaaaatacttagtcttcatctttatctttatcttgaggagaaaagaacaccaccttactaaagttaacactaactagctagattctatggcatagggcgtcacagcatgagtaattttttaaagaaaaagatcaccgataatatgttctgagtttatcacagaaacaagttgatgatatgataattttatattaaaaaatagagctgtatcaatgagaccgtggaaagatagaacctcaagtaaaaagggaacgtaaagaatggatcaacaccatttccttgtatggtcataagctggtagaaggaatagaagaaatggataaatcatacgtttcgactagaataatggcagttttttgttggcttatttctgttttttggttgagtttaatgccatttaagtaatgccatgaatgggaatgcaaattatatataaaaaataaaaatcaatacatagatttaaggacctcccctcaaatgtacatggcgctgtaagttttcctttgcttgatttttttatgtagttaatttggggtaggaactagttccatggtttctgttttaccttgttcccctcatatggagaaattgcatgacctgtcatccatttgtgttaccctgcaagtttcaagtctggaaaagagaaatttaaatgaaaatttgttgaattttcttattccgcttgccttgttgttactcatgggaaactcaacagtagggtcaatattaaagtcataaatgatacatgagtaaaaacatatgttcttaataacaaaccattttcaagtataaatgctcgatttgcatgccttgattagtagtagctatcctttgatcaaggtgaacaactacaatccatgttctgcttgcatagaagctgagctgatgcaaatcaagctcagttacatgagtaaaaacttcatcatgaaaataagttgagttctctagttcttttgtattttcttaaatttgtcatatgatttcctttatgacagactcgcgatatcaatatcattttgatcatgcatattgtggacaccctttatgtatggaactttaatgattctgttacaggtctagttgtcggtgggcttgctaatatttcaaatacagagaccaacactaggtttgtgttgttttattaacatttatacacaatgcaagagtatttttcacatgatgtagacatatgctatgcaagatttgggagttatttcattcccgtatcatgcttattattatcaggaattcaggatcttatgcatgctgtatgtatgctttccattgattctatcttgtttccttcaatgtgcaggatgtggttcaacttccatgacgaatttttcttcttgttcttattgcctccaataatattatatccttttgattttcaaattcaaacttaatttcttatactgttctaaaagatgcttcataatatctgaatacgttttccttgacttcatagaacccaatcaggattcagtctatccccagtaagtacctcatgatggcaataattcaaattgtctagacttctttccttgaaataataatatatttttttacagaaaccattctttgcaaattttggggctattgtaacttttgccatccttgggacattcattgcttctgttgtaacaggagttctcgtgtaagaatttcacaaactttttgttctaattctgtctgaagtattttatcttactagtcaacctctatcatactgcagctatcttggtgggttgacatttctaatgtacaaacttccatttgttgagtgcctcatgttcggtgctcttatatctgcaactgatcctgtcactgtgttatcaatattccaggtgcttatttttttcacgtatctcgttcttggacatgtgtacttataattcacgtaactgccttgcatggctagaaggtgattaggatatcatatagatatagattgggaagaaaactttgtatgagatgcttaaatttttcatgcacgaaactgcacacatacacatacacactttaccaatatgagtaaacctcttatctcaggaaacctatcctaaaccatgtactacatctatagggaaacatgcctaactagcaagatgactaaggtaccgtttgaattagcaaatccatcatttgattttcagcttataataagccactgctaaatttgatttttaaaacttaattttggagttgattttggggtttcttcatcatgttttatttttgagcattggcttttaaactacgaataacacagatataaacggtttacacataatttcttttgggttgcttctatgccgttttatggcttatcagatataggccaaacaataagactgtagatgattggtggatgaaagctgctggatgatttacttgaatatagggataaaataaatattatatatcgtaaactgaacaaatagcttataacaagtggtccaaggaagcaatgcagtagaagattttttttttttttgagaaaacatagttttagaagcgtggagcaaataatccggtggatagtctgaaaagaacagggcctaagtattaatgcaccagcagggctaggaaacagcacatattgatacactcttgtgaacagatttttgtttgaacttcgctgttgcattatgatttctatattacatgatgttgtctaatacaaaaagaaaattttaatgaggttgtaagcagtcaataaatcagaagttgtctctgttgtttgatgttttaaaattgttgtgttctcattcttgaaagacgcatcatcttcatttctttatattgctactagtgaagcataccatagactctcagtactatacatggaaccccacttttagaggcaaatgattgtttatgtaagtaaatgtaaaatagaaacctggttgcaatgctaaatgaatatgaaacattctgaaagcaaatattatcctaatgcccaggtaattgataaaaaatgtgctaaactcgtaacactgttttgttgtagtttcagtgttgtaccatatttttggtagcatttggcttgaacttgaaaacagatcattactactagattttgatgcaccatcagaatttacaacagaagtttgtggtggtaaagttactgtatatttagtgtaacatactgaatcagtgcatgcagccattattattattttttatgtactttgatatatgtccttagccaatgttttttttaaagatgttccattgtttaaatatggcatattaaaaaatgttggaggattagtggccatatggatgttgggaatctgaactaatgatgcatctcctgaaattattccatgcaggagctgggcactgatgttaacttgtatgctcttgtgtttggagaatctgttctaaatgatgcggtttgtttttacttctttcgagtgcatgcaatagtagtaattacttttgtttatgactaacatgcatatcttatttggatagtgcagatggcgatttcgctttacaggtctgtctctttcaattacatataattcttttgacatatgcatttcttgcttatatctatccttttgttcaggacaatgtcattggtcagaagtcaagcagcagctggggagaacttctttatgatggttttccagttccttgagacctttgttggttcattgtcatcaggttgcatcacagctcagaatattctcaactatttcaaagggacctttggcattgtggttgccttctaaaattggttctgtttgatgcaagctaatgaacatcatatattttagagcaatataagaattattttactagaataggtaaaaacaatgttttaatgtatggtacataacagcacagcagggcacagtattaatggctggatcttatataatatgctaccccttcatgttagcaaaaatgctctagcaagtttagtcataaacgttctcccttttgaggaactagactctgatgatcaaataccaaaatttagttttataccgtagatgcccggaaaatatgtacctgcttttactcggggttgaaattttctggacaacgatatattctccatcactaattcgaactgatctagtccctttcatagtcattgtcaattcattagctcatgtaaccattccatttgtcggattgcaggtgttggagttggatttatctctgctcttatatccttttcctaagttctacatggaaactctgtttgcaaaacatgaaagactatgcatgcttagtattgaccagtgtgtgtttaatcttatcttcatataccaattcaaaatcttcctctttaaacaactttcacaagaaatgttcttctcttagattagcagcaacaaagaaaacatggtagaatctaaattgcaatattcattttcttcttatggtcatgttttccattgctcttattgaatgttagctaaatcttcatatgctttttagtggcagttgtgttatcagtccttggctccttatagctttgtgtaaaatgcattatttttttctttgtaatagtgttaaattgcaatatttatgtattactatttaccatttactcattgcttgttttacggtaaattattttatttactacttgatcttgtgcaaccttgaccactctgtgtacctgtttaagtatgctggactggatattgacaagtaagtcatatcatgctacctgcttttagttcatagactttttcatgatttcatacgaaatatgttgccagtctaagcctgctgaattgttaacggtttcagtcttcaaaacttggagtgctgcctttttgttctcttcccatacttctcgtaaggacacttaaatacttcactctacccttcttctatactttttttattaaaatatttcgtatcaattctaggtatatgttagcagaaggacttgggttgtcaggaattgtttccatactattcacaggaatggtaagtacaatatgcaatattgcaaaatagcatattatatgaaaaaccatatctgcacaccatggctatgtctcttggaatcatacttgctatttttttttctcaggttatgaagcactatacattttccaatctctcaaacaactctcagcgcttcgtttctgccttctttcacttgctgtcatctttagcagaaacatttgtgtaagctcaggagctttgtttgagtaatataaaaacaaccattcccttttgctcttaatggacaattcctgaattcatttttcaggttcatttatatgggctttgatattgccatggaagaacatagctggtctcatgtgggcttcatattcttctcaattgtatccttaattttgtttttcattttcctaaatcgccagttttggccttttctctgtttggtagaaaattggttccttgacttactgaacaacacagatatttataatcattgcaaggtactgtcatgacttatgagccctctatgcaaatataatacttaattggcagccaaagccacagttttgtcctgatttgcaaaattatgtcttctctatagtaaaagcatgtagtagtgggatgtatatgaaagatctatcccttatttatgtgcatctatgaccattcaatacagtttagactttagagaaatgatagatgtcgcgagagcttatatcatttatctacatgcttgaatatatgactgcaataatgttagaccagatgtagaaaatctgtcccaagtgtcaaattgatcagttccaagttaagcctcagtgtaggaacagaattttcacaatttttcacttgcatttatgatgtaatttatatgtactccctcctattttaaattacttgtggttctaggtttttcctaagtcaaacattctaagctttgatcgtccatttctatacacttgtatagtttaacatcataagctttactccctccatcccaaaatatgttgacttttagctggcaagaagttgctatattttgggacggcggtagtatatttttagattcaccctgagaaatatacggatttctaaaaattaatggtcaaagattgacatgtttgacttaggacaaacctagaacgataattaatttgaaacagagggagtattcagttttacattggttgtttctcatcttggcggtggtgtttaactttatacattatttactctgcagggcagtaaatgtcttttcttgtgcatatttggttaacatgtcacggccagaacatcgacgcatacctctaaagcatcagaaagcactttggtttagtggtgagggcagatcgccattacagctggtagtttatatgattcacatttcattcaagataattgttcttatttgtacaaacagggcttagaggggccatggcttttgcacttgctctccaatctgccaatgaacttcctggaggacatggaaaaacaatattcacaaccaccacagctattgttgttttaacggtacctgcacgttttccattttctattactttgacttcaataaatggtgacactattgattggaatgctattgtttattcttacggccgtccttcagatggcatgtcatgcttgcacatatactctactagttgggtaacttctctgtgcatatggtactttcaaataggcaatttattgttgatgtggctgccttacaaaattagttccatagaccaaccaaaattttccaaaccattaggaaaatacaaggcatggaaattcaaattgctacatgcattctgtgcattttttttcctggtgttgcacgtatgggagtcctgaatcattgaactaacaatgagataatgcatcagtaggagtaggactagtgcaatattaattgaaagtaaactgaacagttctaatcaatcacctgaaacctcacaggtacttcttatcggaggatcgacgggcaccatgctggaagctttggatgtaattggtgatgaaaacagatcaatagaagtaagcgtcgttttttttttcataattctgaatggcttgtcactactctctttaagacttaagatggacctgggctacagaatactgttccaatttctagaagcaaaaatattatcatcaaaggtggctgatttggttatcttgtttccattgcccatctggttcatccaatgagactacggttgattaactgtgttattggtcattgcacgatttaggttatttggtcttgtataatttgcttgtttcttatactttaaagacaattaggagttaggactaaagacttctgtgtgacaccacttgcagaattatgacgacaacaatggttacatccccccaacgtatgaggaaggttcatcatctggaggaggattaagaatgaaactgaaggaattccacaaaaggtactacctgtcttatgtttccattcgctacacgtcataacatgaaaaaaggaaatgcttatcgccttgtaatgatcatgcagcacgacatcgttcactgcccttgacaggaactatctgactccatttttcaccagtcaaactgatgaggatgatgatgtcttcggtaagtagcttattcttttacatggtagctagcatacaagagtccgcatgatactgcaaaatgatcttatttgcctagtctgaaatgtgttgtatcgtaattgtattatcaacttaatttttactgcatgggctgcagttttttttgatcttttcccctcaattgctgagactgttcattgttgtcttcttgttttgtgatataggtgaacaaccccaaaaccagagacgcggattctatgaccaatagcttggatgagttgccacctgacagccacatacacgatacttagcatggtagcatgtgatgagattggaagcgatcgtaagtatacaacttctcatagttgaatagcatatgaaagagcataccgtaggatagatatcataacacaacttgattcgtcggcgatgacgaaagcatgctgcttcatgtatatattttaggcctcgattagtacgtggtggagctgtaatgagacaaaaatgattgtaagggaaaaaaaactgagcccaagcccatgtcatgagttagaatgattgcaataacccagagctgatcattggcagcttactgtcaagttggaaaagcatgttaaccaaatcaccagctgtgtcattggctggtcttgaagttactgatcatcattggggcttaaatcattcatgtttg</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0286400, RefSeq:Os09g0286400

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Cite error: Invalid <ref> tag; no text was provided for refs named ref1
  2. ↑ 2.0 2.1 Cite error: Invalid <ref> tag; no text was provided for refs named ref2
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