Difference between revisions of "Os09g0286400"
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===Expression=== | ===Expression=== | ||
| − | [[File: OsNHX Expression01.jpg|left|thumb| | + | [[File: OsNHX Expression01.jpg|left|thumb|200px|'''Figure 2.''''' Expression of OsNHX1, 2, 3, and 5 in rice tissues.(from reference <ref name="ref1"/>).'']] |
| − | [[File: OsNHX5 promoter–GUS.jpg|right|thumb| | + | [[File: OsNHX5 promoter–GUS.jpg|right|thumb|200px|'''Figure 3.''''' OsNHX5 promoter–GUS expression pattern in transgenic rice plants.(from reference <ref name="ref1"/>).'']] |
1. Under the same experimental conditions as the ones used for the ethylene biosynthesis genes, transcripts of [[Os05g0148600|''OsNHX2'']] and [[Os11g0648000|''OsNHX3'']] could not be detected. For three other paralogs, [[Os07g0666900|''OsNHX1'']], 4 and 5, ''Hien Thi Thu Vu et al.'' observed marked induction under the submergence stress. The level of induction was higher in the vigorous cultivars Nipponbare and FR13A than in non-vigorous Kasalath and IR42. The amount of [[Os11g0648000|''OsNHX3'']] and ''OsNHX5'' transcripts under submergence was lowest in the most non-vigorous IR42<ref name="ref2"/>. | 1. Under the same experimental conditions as the ones used for the ethylene biosynthesis genes, transcripts of [[Os05g0148600|''OsNHX2'']] and [[Os11g0648000|''OsNHX3'']] could not be detected. For three other paralogs, [[Os07g0666900|''OsNHX1'']], 4 and 5, ''Hien Thi Thu Vu et al.'' observed marked induction under the submergence stress. The level of induction was higher in the vigorous cultivars Nipponbare and FR13A than in non-vigorous Kasalath and IR42. The amount of [[Os11g0648000|''OsNHX3'']] and ''OsNHX5'' transcripts under submergence was lowest in the most non-vigorous IR42<ref name="ref2"/>. | ||
Revision as of 13:15, 10 January 2015
OsNHX5(Os09g0286400), is a Na+and H+exchanger in rice (Oryza sativa)[1][2].
Contents
Annotated Information
Function
- The genomic organization of OsNHX5 is graphically presented in Figure 1. OsNHX5 had 22 exons[1]
- OsNHX expression was also enhanced under submergence, and the levels of OsNHX1 and OsNHX5 transcripts agreed well with those of seedling vigor under submergence[2].
- OsNHX1, OsNHX2, OsNHX3, and OsNHX5 can suppress the Na+, Li+, and hygromycin sensitivity of yeast nhx1 mutants and their sensitivity to a high K+ concentration. The expression of OsNHX1, OsNHX2, OsNHX3, and OsNHX5 is regulated differently in rice tissues and is increased by salt stress, hyperosmotic stress, and ABA[1].
- OsNHX1 and OsNHX5 play different roles in these rice tissues, although the antiporters cooperate in most tissues[1].
GO assignment(s): GO:0006814, GO:0006885, GO:0015299, GO:0015385, GO:0016021
Expression
1. Under the same experimental conditions as the ones used for the ethylene biosynthesis genes, transcripts of OsNHX2 and OsNHX3 could not be detected. For three other paralogs, OsNHX1, 4 and 5, Hien Thi Thu Vu et al. observed marked induction under the submergence stress. The level of induction was higher in the vigorous cultivars Nipponbare and FR13A than in non-vigorous Kasalath and IR42. The amount of OsNHX3 and OsNHX5 transcripts under submergence was lowest in the most non-vigorous IR42[2].
2. Hien Thi Thu Vu et al. therefore studied the expression profiles of Na+/H+ exchanger gene OsNHX using submerged rice seedlings. It showed that three paralogs of OsNHX responded positively to the submergence stress and that the level of enhancement appeared to agree with the level of seedling vigor among the four cultivars studied. Although variation in gene expression itself could not be taken as a valid indicator of mechanistic evidence, this observation indicates the necessity of further study of the role of OsNHX gene expression in seedling vigor under submergence in rice[2].
3. Fukuda et al. examined the expression of OsNHX1, OsNHX2,OsNHX3, and 5 in various rice tissues by Northern-blot analysis with total RNA extracted from 8-day-old rice seedlings and 12-weekold rice (7 days after heading). Expression of these genes was regulated differently in different rice tissues (Fig. 2). Compared with other tissues, and those of OsNHX5 were higher in panicles, flag leaf sheaths, seedling roots, and flag leaf blades[1].
4. OsNHX5 promoter–GUS expression pattern in transgenic rice plants[1]:
- OsNHX5 promoter–GUS expression was observed in the stele of roots, the emerging part of lateral roots, the shoot vascular bundle, water pore, and the basal part of shoots where OsNHX1 promoter activity was also higher (Fig. 3a–g).
- GUS activity was also detected in the vascular bundles, especially the companion cells and xylem parenchyma cells, of culms and flag leaf blades and sheaths of mature plants in the heading stage and the nerves of both the palea and lemma, as for OsNHX1 promoter–GUS
activity (Fig. 3h–q).
- However, stronger OsNHX5 promoter activity was detected in the root tip, especially the root cap and epidermis cells, and pollen grains compared with the OsNHX1 promoter (Fig. 3b, p–r). These findings suggest that OsNHX1 and OsNHX5 play different roles in these rice tissues, although the antiporters cooperate in most tissues.
5. The expression of OsNHX1, 2, 3, and 5 is regulated differently in different rice tissues. The transcript levels of all genes were higher in flag leaf sheaths, and those of OsNHX1, 2, and 5 were higher in panicles[1] .
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Knowledge Extension
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os09g0286400 |
|---|---|
| Description |
Sodium/hydrogen exchanger subfamily protein |
| Version |
NM_001069315.1 GI:115478369 GeneID:4346626 |
| Length |
9242 bp |
| Definition |
Oryza sativa Japonica Group Os09g0286400, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 9:6940039..6949280 |
| Sequence Coding Region |
6940462..6940505,6940711..6940793,6940877..6940974,6941284..6941361,6941791..6941900 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008402:6940039..6949280 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008402:6940039..6949280 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgctggagctgagcctggtgtccgcttcgccccctggtgggctggcggcgagcccgcccccgcccgccgccatcccggggaaggagcagcaggtggccggggtggggatcctgctgcagatctccatgctcgtgctctccttcgtgctcggccacgtcctccgccgccaccggttctactacctccccgaggccagcgcgtctctcctcatcggtctagttgtcggtgggcttgctaatatttcaaatacagagaccaacactaggatgtggttcaacttccatgacgaatttttcttcttgttcttattgcctccaataatattccaatcaggattcagtctatccccaaaaccattctttgcaaattttggggctattgtaacttttgccatccttgggacattcattgcttctgttgtaacaggagttctcgtctatcttggtgggttgacatttctaatgtacaaacttccatttgttgagtgcctcatgttcggtgctcttatatctgcaactgatcctgtcactgtgttatcaatattccaggagctgggcactgatgttaacttgtatgctcttgtgtttggagaatctgttctaaatgatgcgatggcgatttcgctttacaggacaatgtcattggtcagaagtcaagcagcagctggggagaacttctttatgatggttttccagttccttgagacctttgttggttcattgtcatcaggtgttggagttggatttatctctgctcttctgtttaagtatgctggactggatattgacaatcttcaaaacttggagtgctgcctttttgttctcttcccatacttctcgtatatgttagcagaaggacttgggttgtcaggaattgtttccatactattcacaggaatggttatgaagcactatacattttccaatctctcaaacaactctcagcgcttcgtttctgccttctttcacttgctgtcatctttagcagaaacatttgtgttcatttatatgggctttgatattgccatggaagaacatagctggtctcatgtgggcttcatattcttctcaattatatttataatcattgcaagggcagtaaatgtcttttcttgtgcatatttggttaacatgtcacggccagaacatcgacgcatacctctaaagcatcagaaagcactttggtttagtgggcttagaggggccatggcttttgcacttgctctccaatctgccaatgaacttcctggaggacatggaaaaacaatattcacaaccaccacagctattgttgttttaacggtacttcttatcggaggatcgacgggcaccatgctggaagctttggatgtaattggtgatgaaaacagatcaatagaaaattatgacgacaacaatggttacatccccccaacgtatgaggaaggttcatcatctggaggaggattaagaatgaaactgaaggaattccacaaaagcacgacatcgttcactgcccttgacaggaactatctgactccatttttcaccagtcaaactgatgaggatgatgatgtcttcggtgaacaaccccaaaaccagagacgcggattctatgaccaatag</cdnaseq> |
| Protein Sequence |
<aaseq>MALELSLVSASPPGGLAASPPPPAAIPGKEQQVAGVGILLQISM LVLSFVLGHVLRRHRFYYLPEASASLLIGLVVGGLANISNTETNTRMWFNFHDEFFFL FLLPPIIFQSGFSLSPKPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLMYKLP FVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVR SQAAAGENFFMMVFQFLETFVGSLSSGVGVGFISALLFKYAGLDIDNLQNLECCLFVL FPYFSYMLAEGLGLSGIVSILFTGMVMKHYTFSNLSNNSQRFVSAFFHLLSSLAETFV FIYMGFDIAMEEHSWSHVGFIFFSIIFIIIARAVNVFSCAYLVNMSRPEHRRIPLKHQ KALWFSGLRGAMAFALALQSANELPGGHGKTIFTTTTAIVVLTVLLIGGSTGTMLEAL DVIGDENRSIENYDDNNGYIPPTYEEGSSSGGGLRMKLKEFHKSTTSFTALDRNYLTP FFTSQTDEDDDVFGEQPQNQRRGFYDQ</aaseq> |
| Gene Sequence |
<dnaseqindica>8776..8819#8488..8570#8307..8404#7920..7997#7381..7490#7201..7298#6441..6460#6268..6343#6085..6182#5918..5978#5796..5843#5662..5693#5175..5203#4594..4691#4502..4521#4352..4414#2749..2860#2585..2670#2485..2509#2329..2388#2088..2139#131..347#gctttcccccccgcgagccttctggaagaagcacgcatcgattgaccgcgaccgacctcgccgccggcgaccgtacggattccgcccctccccgccgcggcggcggcaccaccggggcgcgcgcgccgggatggcgctggagctgagcctggtgtccgcttcgccccctggtgggctggcggcgagcccgcccccgcccgccgccatcccggggaaggagcagcaggtggccggggtggggatcctgctgcagatctccatgctcgtgctctccttcgtgctcggccacgtcctccgccgccaccggttctactacctccccgaggccagcgcgtctctcctcatcggtacgtacgcgcgctacgaattgatcgtgcgagtcgcaaaccctagctgtcaaggatcgtttcgtttatagagtttggattagtttgttgaggtgattattggtttgtgggatttagaaattagaagtgggatgttcagatggagatggtatggggattgatgcatgtttccgatgccctgcaaatactgtgaagggttggaattcagtgccattctaggtgaaatgcgaaaatgagccgggatcatgctaataatgtagataattcattttgtctgcctttgcctctgtggtagcttttctacaagaaacttaattctagatgaaattttcagcgaaatgagaagggatcatactattaatgcagatgattcatttaggagatgctgcatggtagcacttaatttgtctacctttgtaccccatttattgggatacacaattctttcgagccatggcatcataatattaggtcccgtttgtttccactacaaagagtggataaagttttggatattcgtggcacgcttttcaaactgctaaacggtgcgtttcgtgcgaaaactttctatatgaaggttgctctaaaatattagattaatatatttttcaagtttgtaataattaaaacttaattaatcatacgttaataccacctcgttttgggtaaaatacttagtcttcatctttatctttatcttgaggagaaaagaacaccaccttactaaagttaacactaactagctagattctatggcatagggcgtcacagcatgagtaattttttaaagaaaaagatcaccgataatatgttctgagtttatcacagaaacaagttgatgatatgataattttatattaaaaaatagagctgtatcaatgagaccgtggaaagatagaacctcaagtaaaaagggaacgtaaagaatggatcaacaccatttccttgtatggtcataagctggtagaaggaatagaagaaatggataaatcatacgtttcgactagaataatggcagttttttgttggcttatttctgttttttggttgagtttaatgccatttaagtaatgccatgaatgggaatgcaaattatatataaaaaataaaaatcaatacatagatttaaggacctcccctcaaatgtacatggcgctgtaagttttcctttgcttgatttttttatgtagttaatttggggtaggaactagttccatggtttctgttttaccttgttcccctcatatggagaaattgcatgacctgtcatccatttgtgttaccctgcaagtttcaagtctggaaaagagaaatttaaatgaaaatttgttgaattttcttattccgcttgccttgttgttactcatgggaaactcaacagtagggtcaatattaaagtcataaatgatacatgagtaaaaacatatgttcttaataacaaaccattttcaagtataaatgctcgatttgcatgccttgattagtagtagctatcctttgatcaaggtgaacaactacaatccatgttctgcttgcatagaagctgagctgatgcaaatcaagctcagttacatgagtaaaaacttcatcatgaaaataagttgagttctctagttcttttgtattttcttaaatttgtcatatgatttcctttatgacagactcgcgatatcaatatcattttgatcatgcatattgtggacaccctttatgtatggaactttaatgattctgttacaggtctagttgtcggtgggcttgctaatatttcaaatacagagaccaacactaggtttgtgttgttttattaacatttatacacaatgcaagagtatttttcacatgatgtagacatatgctatgcaagatttgggagttatttcattcccgtatcatgcttattattatcaggaattcaggatcttatgcatgctgtatgtatgctttccattgattctatcttgtttccttcaatgtgcaggatgtggttcaacttccatgacgaatttttcttcttgttcttattgcctccaataatattatatccttttgattttcaaattcaaacttaatttcttatactgttctaaaagatgcttcataatatctgaatacgttttccttgacttcatagaacccaatcaggattcagtctatccccagtaagtacctcatgatggcaataattcaaattgtctagacttctttccttgaaataataatatatttttttacagaaaccattctttgcaaattttggggctattgtaacttttgccatccttgggacattcattgcttctgttgtaacaggagttctcgtgtaagaatttcacaaactttttgttctaattctgtctgaagtattttatcttactagtcaacctctatcatactgcagctatcttggtgggttgacatttctaatgtacaaacttccatttgttgagtgcctcatgttcggtgctcttatatctgcaactgatcctgtcactgtgttatcaatattccaggtgcttatttttttcacgtatctcgttcttggacatgtgtacttataattcacgtaactgccttgcatggctagaaggtgattaggatatcatatagatatagattgggaagaaaactttgtatgagatgcttaaatttttcatgcacgaaactgcacacatacacatacacactttaccaatatgagtaaacctcttatctcaggaaacctatcctaaaccatgtactacatctatagggaaacatgcctaactagcaagatgactaaggtaccgtttgaattagcaaatccatcatttgattttcagcttataataagccactgctaaatttgatttttaaaacttaattttggagttgattttggggtttcttcatcatgttttatttttgagcattggcttttaaactacgaataacacagatataaacggtttacacataatttcttttgggttgcttctatgccgttttatggcttatcagatataggccaaacaataagactgtagatgattggtggatgaaagctgctggatgatttacttgaatatagggataaaataaatattatatatcgtaaactgaacaaatagcttataacaagtggtccaaggaagcaatgcagtagaagattttttttttttttgagaaaacatagttttagaagcgtggagcaaataatccggtggatagtctgaaaagaacagggcctaagtattaatgcaccagcagggctaggaaacagcacatattgatacactcttgtgaacagatttttgtttgaacttcgctgttgcattatgatttctatattacatgatgttgtctaatacaaaaagaaaattttaatgaggttgtaagcagtcaataaatcagaagttgtctctgttgtttgatgttttaaaattgttgtgttctcattcttgaaagacgcatcatcttcatttctttatattgctactagtgaagcataccatagactctcagtactatacatggaaccccacttttagaggcaaatgattgtttatgtaagtaaatgtaaaatagaaacctggttgcaatgctaaatgaatatgaaacattctgaaagcaaatattatcctaatgcccaggtaattgataaaaaatgtgctaaactcgtaacactgttttgttgtagtttcagtgttgtaccatatttttggtagcatttggcttgaacttgaaaacagatcattactactagattttgatgcaccatcagaatttacaacagaagtttgtggtggtaaagttactgtatatttagtgtaacatactgaatcagtgcatgcagccattattattattttttatgtactttgatatatgtccttagccaatgttttttttaaagatgttccattgtttaaatatggcatattaaaaaatgttggaggattagtggccatatggatgttgggaatctgaactaatgatgcatctcctgaaattattccatgcaggagctgggcactgatgttaacttgtatgctcttgtgtttggagaatctgttctaaatgatgcggtttgtttttacttctttcgagtgcatgcaatagtagtaattacttttgtttatgactaacatgcatatcttatttggatagtgcagatggcgatttcgctttacaggtctgtctctttcaattacatataattcttttgacatatgcatttcttgcttatatctatccttttgttcaggacaatgtcattggtcagaagtcaagcagcagctggggagaacttctttatgatggttttccagttccttgagacctttgttggttcattgtcatcaggttgcatcacagctcagaatattctcaactatttcaaagggacctttggcattgt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| External Link(s) |
