Difference between revisions of "Os01g0536000"
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| − | ''''' | + | '''''OsCIPK08''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases) in rice<ref name="ref1"/>. |
==Annotated Information== | ==Annotated Information== | ||
Revision as of 08:30, 29 January 2015
OsCIPK08 is a member of CIPK genes (CIPKs,calcineurin B-like protein interacting protein kinases) in rice[1].
Contents
Annotated Information
Function
Almost all OsCIPK proteins contain the complete protein kinase domain (except OsCIPK21) and the NAF domain (except OsCIPK8). OsCIPK08 has lost the region containing the FISL/NAF motif, but it contains the full N-terminal catalytic domain (sharing sequence homology with SNF)[1].
GO assignment(s): GO:0004672,GO:0004674, GO:0006468, GO:0005524, GO:0007165
Expression
OsCIPK08 was induced by salinity stress[1], the expression of OsCIPK08 was relatively high in the shoot[2].
Evolution
OsCIPK08 belongs to subgroup I of OsCIPK family[2].
Knowledge Extension
- From real-time RT-PCR analyses, Giong et al. identified 16 OsCIPK genes showing a significant up- or down-regulation in response to drought stress. Using the probable functional gene network tool, RiceNet, Giong et al. generated a hypothetical functional gene network based on 15 out of 16 OsCIPK proteins (Fig. 1)[2].
- More than 200 interactions mediated by these OsCIPK proteins. This network was further refined by integrating fold change data showing at least 1 log2-fold up-regulation (red colored nodes in Fig. 1) or less than -1 log2-fold down-regulation (green colored nodes in Fig. 1) under drought stress to all the elements in this network[2].
- Integrated subcellular localization data further enhances the feasibility of functional modules consisting of co-expressed functional groups such as CIPK and PPC and other components in the network(Fig. 1)[2].
- The calcineurin B-like protein–CBL-interacting protein kinase (CBL–CIPK) signaling pathway in plants is a Ca2+-related pathway that responds strongly to both abiotic and biotic environmental stimuli[3]. The CBL-CIPK system shows variety, specificity, and complexity in response to different stresses, and the CBL–CIPK signaling pathway is regulated by complex mechanisms in plant cells[3].
Labs working on this gene
- National Center of Plant Gene Research (Wuhan), National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
- Department of Plant Molecular Systems Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea
- Graduate School of Biotechnology, Kyung Hee University, Yongin 446-701, Korea
References
- ↑ 1.0 1.1 1.2 1.3 Xiang Y, Huang Y, Xiong L. Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement[J]. Plant physiology, 2007, 144(3): 1416-1428.
- ↑ 2.0 2.1 2.2 2.3 2.4 Giong H K, Moon S, Jung K H. A systematic view of the rice calcineurin B-like protein interacting protein kinase family[J]. Genes & Genomics, 2015, 37(1): 55-68.
- ↑ 3.0 3.1 Yu Q, An L, Li W. The CBL–CIPK network mediates different signaling pathways in plants[J]. Plant cell reports, 2014, 33(2): 203-214.
Structured Information
| Gene Name |
Os01g0536000 |
|---|---|
| Description |
Similar to CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.1.37) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein) |
| Version |
NM_001049794.1 GI:115437291 GeneID:4326419 |
| Length |
8329 bp |
| Definition |
Oryza sativa Japonica Group Os01g0536000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:21126107..21134435 |
| Sequence Coding Region |
21126517..21126612,21127124..21127198,21127298..21127354,21128220..21128336,21128878..21128991 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:21126107..21134435 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:21126107..21134435 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggtgggcggaggggcgctgcggcgggtggggaagtacgaggtggggcggacgatcggggaggggacgttcgccaaggtgaagttcgcgcagaacacggagagcggggagagcgtcgccatgaaggtggtcgaccgctcctccatcctcaagcacaagatggcggatcagattaagagagagatatctataatgaagcttgtgaggcatccgaatgtggttagactacacgaagtcttggcaagccggaagaagatatttataatcttggagttcatcactggcggtgaactatttgataaaataattcgtcatggaagactcaatgaagctgatgcacgcagatactttcagcagctcattgatggtgttgatttttgtcacagcaaaggtgtctaccatcgagatttaaagcccgaaaatctcctccttgattcccaaggaaatcttaaaatatcagactttggactcagcgcctggcctgctcagggtggtgcccttttacgtactacctgtggaaccccaaattatgttgccccagaggttctcagtcataaaggatatgatggagcacttgctgatacatggtcatgtggagttattctatatgtcctgttggcaggttatcttccatttgatgaagttgatttgactaccctttacgggaagatagagagtgcagaatattcattcccagcttggtttcctaatggtgccaagtcacttattcacagaattcttgaccctaatccagataaaagaatcaggatagaagagatcaggaatgatgaatggtttaagaagaattatgaacctaccagagaaattgaaagtgaagaagtcaatcttgatgatgtcaatgcagcttttgatgatcctgaggaagacgctgaccatactttagatgacgaagcaggacctttgacactcaatgcattcgacctaataattctatctcaaggcttgaaccttgcagcactatttgatcgccgacaggactatgacaagcttcaaaatagatttttatcacgcaaaccagcaaaggttatcatgtcaagcatggaggttgttgctcagtcaatggggtacaagacacacattcgcaattataagatgagggtggaaggtctaaatgcaaataagacaagtcatctcgcagttatgcttgaaatttttgaagttgccccatcgatcttcatgattgaactgcaaagagcagcgggagacacctccgattataacaagtttataaataattactgcagcaaattagacgatatcatttggaattttccaattgagaagagcaaatcaaggatatcgcggctatcgaagcgctag</cdnaseq> |
| Protein Sequence |
<aaseq>MVGGGALRRVGKYEVGRTIGEGTFAKVKFAQNTESGESVAMKVV DRSSILKHKMADQIKREISIMKLVRHPNVVRLHEVLASRKKIFIILEFITGGELFDKI IRHGRLNEADARRYFQQLIDGVDFCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSAW PAQGGALLRTTCGTPNYVAPEVLSHKGYDGALADTWSCGVILYVLLAGYLPFDEVDLT TLYGKIESAEYSFPAWFPNGAKSLIHRILDPNPDKRIRIEEIRNDEWFKKNYEPTREI ESEEVNLDDVNAAFDDPEEDADHTLDDEAGPLTLNAFDLIILSQGLNLAALFDRRQDY DKLQNRFLSRKPAKVIMSSMEVVAQSMGYKTHIRNYKMRVEGLNANKTSHLAVMLEIF EVAPSIFMIELQRAAGDTSDYNKFINNYCSKLDDIIWNFPIEKSKSRISRLSKR</aaseq> |
| Gene Sequence |
<dnaseqindica>7824..7919#7238..7312#7082..7138#6100..6216#5445..5558#5004..5126#4766..4855#3811..3936#1706..1759#1559..1633#1372..1479#1074..1145#901..963#156..326#atcccccatctcaatggcgatgtcgagctgagcaccaccctagcggtggagtaggggagctgtggtcggcggcggccgccgccagttgggtgtctcggagtgagaccgggagaggcggcggagggagctcagggagggagggaggaggggcggcgatggtgggcggaggggcgctgcggcgggtggggaagtacgaggtggggcggacgatcggggaggggacgttcgccaaggtgaagttcgcgcagaacacggagagcggggagagcgtcgccatgaaggtggtcgaccgctcctccatcctcaagcacaagatggcggatcaggtgagcccccatctatctcttctgtttttttttcctttttttgttctctctatttgcgtgttgatcaagagattttgctgtactagcttagcttgggaattaattagtgtatgccacggatttgtctagcgccttgagacacagaatggatgagggagattgtttaattcgaccctcttttcatcctcttttgcgccaaattctactcggtttgtcaatggtgggtttgatgcttcatgtccaattggcgtctagcttgcagcttcctttccccacaacaaagtgttaacagtggtggtaccaggattgttgaatcgaatcgcaattttaaacttccgccgagcagtttgttcttctgtatatacctattaagatattgttgttataaaagaaaaaaaaaagtaaggtacctatgtcaagaagcacccctttgtaaaaaagaactcacaggtttatgcttgtaagggaaaggcagttttagctgttctagttttgtgttgttgagctgcgtaagttagctgaatcctgatgtatcagggtgataaaacaggagcttacttaattatttctgcagattaagagagagatatctataatgaagcttgtgaggcatccgaatgtggttagactacacgaagtacaccctctttcccttttctctctttaagttttgttgtttacttctttgttctctcttgctttttccaagtgctgattgggtgatcatatctgttctgttatgtgcaggtcttggcaagccggaagaagatatttataatcttggagttcatcactggcggtgaactatttgataaaatagtaaggccctgcttgttaatgataagtgtccttttcagtgtcattttctcgatatgacctatgaaaaaattgaagttaaattagttcttgtatctgttgcctagttgtctacctcattacttctggattgaacaatcgccacttgtgcttgttggatttaacacacaaaaatgagttttcaaatctatgttgaagcttagttattctgggaacaatgccatttcagattcgtcatggaagactcaatgaagctgatgcacgcagatactttcagcagctcattgatggtgttgatttttgtcacagcaaaggtgtctaccatcgagatttaaaggtgataagtcaaaagaaaaatacgaaaactttttgtgtttagtttgtgggctttttgattttattttgtatgtatgcagcccgaaaatctcctccttgattcccaaggaaatcttaaaatatcagactttggactcagcgcctggcctgctcaggtccatacctttctgaaggcttgtccaatattcatatccttttgtcgagttatttagtttgttcttgtgcagggtggtgcccttttacgtactacctgtggaaccccaaattatgttgccccagaggtgagtgacatctgaatcacatgctttgctttgagttttcctagatagaaaacattaaaattgtcttctgcaacaaagggtggtttaaatatgggttaattggatccatgccactgcaactttgccaaattgaaaaaatgccactactattcatcatatcggctacatgccactcgaaatttctaaaattggaaccatgccactccagtcagtttttccgtcctcctctctcacgccgtctctattcccgtcattatcccccctcccttcccatcctcctgctcctaggtggccggggacagcaccaccaccttcgtcgtcctcaccggcgcaagggtcggcggcgccggtgcacgaagacgaggctggcctgtggttcccgttcgcggactcgctggagaaggacatcttctcggacctcttctacgaggcgcccgtcgcggcggcggcaacggctgcggctgctggcctaggcgccgatggcgacagcgacggcgaaggcaagccttgcaaggacgatgcggcaatggcggaggagcgtggcgggccgggcgcggcgcgacctgatgccgccgcccaagtcgacgcccctcttctctttattccccacttctctccaccacgtccatgatgttagccgtcgcgccggggaacgggttgccggcacggaggttgttgtcggcgtccatcaccctgtacaccaccttgtgcgtcggcttgccgtgctcgtccacgccattctctgcaaagatttcacgtatctcactgtcaatttgacaaatgaactcatccaatccagcgacagcaacatctgtatggatttaacaagaatggaccaagcaagatcgaagcagtcggcggcttggcgccgcgggggctgcccatgccaagggcctcacggccgaggcaatgcggcggccgtggcgccgcatgtcggggtccccgaccgccgacactttgccgccgccattcgtctcgagtctcttgatggactgcgccaccaagtagcacgagatggcgaggacttgacggacccgtgggcggcggcgggggccgccgccgccaaggcgtccgcagaggccccgcgccgctggagcggaggcggagggcaagggacgccgagctgtccgcgctcgcgtcggccacccgtgaggctgtgaccgctcgcgccgccgtgttccgggagccgtccccggcgccgttggacgcgtcgtcgacggcggggcggcgcagagctcccgcccgtggtgctgcgcgcgtcgtcgctgatccagcggtggcgggagatcgaggcgatggggcccgccacgtcgcggccctacgacctggccttcgactccgacggcggctcgccgcgggccacgtggggtgcatcgtcaagaagctcagtggcacgtcgttgccgccgccgctgtactcgatccacgatgggaggtctcgggagccgctgctgccgtcctcgacgccatctgcggcgggagtgctcgggagctgccggcggcgtcgccgctgtcctttgcagtcgcacggagaaagaagagggaaatggaaacgattaaacggtggaacgagacggtgtgagagaggagacggaaaaagggacgagagtggcatggttctaattttaaaaatttctagtggcatgtagctaatatgatgaatagtagtggtattttttcaatttcgtatagttgcagtggcatggatccaattaaccctttaaatataccttcatcctaagatgtcagattactcagttaaacatgtgtgatggaatactcatacatttatccttcaggcaggttgagtaacattgttccaccgtgtaacttaagacatcttctctaaaaaaatgtaaaaaataaaaagtgatataactagaactgttttttatctctatactgaatgagccaaatatgcatgattgatatctcttgattctttatttggaaaaatgctttacttttcattctcagtaaaaccatgtgatgtgtttcatatgattatagataatgtgttcactgcaacctttaactccttgtatggatcaggttctcagtcataaaggatatgatggagcacttgctgatacatggtcatgtggagttattctatatgtcctgttggcaggttatcttccatttgatgaagttgatttgactaccctttacgggaaggtttgtttcttctaacctatggcaacttttttgaagctcaaataagtatattgcaacccatttatgattttgtgtcagtgtatatcatattggcacatgatctctttgtatggaagatcagatctcatgacatttacttgtatttgcttttactatacactatgtgcttacgtttattatctagccactcatttaagcatgattagtggtattagtttgtgaaatccatgtgaaaacaatatcaaacatactcggtacttctcagtgcatagatagctaagtagcttatgtaatgtagtgtgttgctagtagttaaagattacagatcctggcagtggctctgatacgtgagcatagtgatctcatacctgctttcctactgctgaaacattccggcaagtaagaaatgtaagcttgccgaaacaactaaccaactaaaaggaaattaacctcggcatcctttagaataaactagttaacatgctactactttcaataagagaattagcagagaagctggggagcacaacaacaatagcagactcattacacatggcttcatagctaaatcctctccttttcgctcttgtttctcttttctttttggttggtggaagtataaacatttgtattccattctagtaggactgattaagagatatatctatttgcatatttcaggttgagatgcatatagctatttttattttctagatttgaatattagttcaacatatgccttgatggatggaatagaagtttttatctaaaattgtttttcttttgtacagaatatacaaatttatatctgtctatttgcttaatacagatagagagtgcagaatattcattcccagcttggtttcctaatggtgccaagtcacttattcacagaattcttgaccctaatccagataaagtaagtaaagttatagaagtgtttagctaaagaaaatctccattggctgatatgaattcaatgaattatagtttagatacatcacacctctagatactgattttcattggcattttgttgactcaatatgaattttgacttggaacagagaatcaggatagaagagatcaggaatgatgaatggtttaagaagaattatgaacctaccagagaaattgaaagtgaagaagtcaatcttgatgatgtcaatgcagcttttgatgatcctgaggtatttatgcttactcttgtcttagaactgtttttggaaaggaatcattgcatatatatgacattttgtatgtgctacaatcttcaaaatatgctccaaatgaaagcctcggaatggaatttcagttgctccagataagaactattagcagtaactgaaactggaatttcagttgctccattgttaattatgaaatttgatcagaaagcctgtttcgcactgaagctatgctgtacgtttttacgggagctctattgtgccttttacctgtcattatataaatatataatttgtggtcctttttctgtgtgatttcaggaagacgctgaccatactttagatgacgaagcaggacctttgacactcaatgcattcgacctaataattctatctcaaggcttgaaccttgcagcactatttgatcgccgacaggtatggtgcaagacattttgtgatgtctagtgttttcgcaaactaaaagttggagtacaggactaacactgttattatgtcatgtcccagttctacattttttaattaatacgctatttgggcattaaatcatggttcttattgttattatcggtgaatattcagtttagtttaaatagtgtacatgtgatttgctgcggcagtttacattatttttgcaatcatgtattatatgcatagactaaagaaaatccatttgattcaaattattttaacatataaccagaggaaaaagacaatgatagaccatcccatctgatgatctttgttcctcttctctcaaacacaccttaatattgttgctgcccaacttgacacaattcaaactatcctctatttttattatttttgtatgtactccgcaatactggtattgcctagaagcttgtttaaatgtccatggtttaccctgtgtgtgagttttatagataattatgggtttcttctcctcggacctaatgcttgatgccttgatctacaggactatgacaagcttcaaaatagatttttatcacgcaaaccagcaaaggttatcatgtcaagcatggaggttgttgctcagtcaatggggtacaagacacacattcgcaattataaggtaaagtttgttgccccacaccctatagcttgttacaacatcacttacctattatacagatattgcaaatcatcttctccttcatcttagctgacaagcagttgttctatctattttgtgatagttagaatgtaactgttttttggttcattgtacagacatacagacatgaggatctgtagttctgttaaggtctaaattgtatcagaagaagcagcaccctgtcttgaaaagcttattgttttctggaatgtgaatatgttattttaaagtcaaataaatttcttattatcttcaatgtatcaagcctcatgtttgaacaagttgtcaagagaacgtcatttgatatgctggcatttacatttgaaattattgtctaagtagcaaccacaaactacctctgaattgacacaaaaagcatgatgatatcaaaagtattaattcattagaatgtgtttaggttgctggtctaaggggttacaataaactgtaccccaattttttgtacatatatatgcacaagttttatcaacctgagtaaacagtacttcatttcagtccttttaccactggtttaacagtattgaatggtattgccagtgatacatctctttaatttcttgtattgtttgtttgtggcctttttttttcccttttggcataacattgtctggatgctggtaaattgtgatcaaatgcgggcttacagttttaatattattcatgctgttattttgcaagtaaaagagttataatgttttgtcttgtgattttgattctcaaaacttcttttactgctaattagttagcattaccatggacatatttgattccttacatctagttgtgctattaatatattcagatgagggtggaaggtctaaatgcaaataagacaagtcatctcgcagttatgcttgaagtgagtcttgcctcttttgtaatgaagtacatctgttgttttattgccttctattatggattactccaatccttttcatcctgagtttcctctggtcagatttttgaagttgccccatcgatcttcatgattgaactgcaaagagcagcgggagacacctccgattataacaaggtcagatgcaaagagcctttcatacttgcatcatgctgtttcttgaggtcctacagccgatacaccatgtatagctaaatgcacctgatacatctaggctgtagacagcctagtgttataaagctggaaaatattttgcaatgttgttaccacagagctttacggagactgtctagaaaatagttaggtactagtagtaccagactgatgtgggacctacctgtgtacatgcatggaccgtactattcatttgctgctgtcttatttttcagtttgtgttttgtcaaagctaaataagcatgcctaatgttaaaggttaggcatgggcaaatatattcaagtagtttcttcacccaagaaatctgaaatagtaatgcttataatttcctgatgaaacttcttgcttcactagatatttttgtgaattgtataatgtaaaataaattgatctggataatggcttttgatttgctaagacatgcacaactaactccgcgtgtcttatgtgcagtttataaataattactgcagcaaattagacgatatcatttggaattttccaattgagaagagcaaatcaaggatatcgcggctatcgaagcgctagtctgctttgacatccatcatttgtatgctgttgttcaactctattttcatcttctattgccataatatttgcatttacctctacttattacctcttaaccataccggaatgctcaccactattgcaggtactatgtgtaatctaatgctatgcagcttgagtggtattgggtttgttagtggatgtatttgtagagattgccaattcaattcatctctgatcttttagttataagagatgaccatgtacaaagggccactgaaagttttggcatctcagtttctctgtacaatgtttgcagcgaggtatattaaacagtttgactgaccgccgctccctgctcatcaacacgctttgtagtttgtctcaagatgtattaatttctccctgctccattagcagcttgcatc</dnaseqindica> 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| External Link(s) |
