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| − | Please input one-sentence summary here.
| + | '''''OsCIPK08''''' is a member of '''CIPK genes''' (CIPKs,calcineurin B-like protein interacting protein kinases) in rice<ref name="ref1"/>. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | Almost all OsCIPK proteins contain the complete protein kinase domain (except [[Os07g0637000|''OsCIPK21'']]) and the NAF domain (except ''OsCIPK8''). ''OsCIPK08'' has lost the region containing the FISL/NAF motif, but it contains the full N-terminal catalytic domain (sharing sequence homology with SNF)<ref name="ref1"/>. |
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| | + | '''GO assignment(s):''' [http://amigo.geneontology.org/amigo/term/GO:0004672 GO:0004672],[http://amigo.geneontology.org/amigo/term/GO:0004674 GO:0004674], [http://amigo.geneontology.org/amigo/term/GO:0006468 GO:0006468], [http://amigo.geneontology.org/amigo/term/GO:0005524 GO:0005524], [http://amigo.geneontology.org/amigo/term/GO:0007165 GO:0007165] |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | ''OsCIPK08'' was '''induced by salinity stress'''<ref name="ref1"/>, the expression of ''OsCIPK08'' was relatively high in the '''shoot'''<ref name="ref2"/>. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | ''OsCIPK08'' belongs to '''subgroup I''' of ''OsCIPK'' family<ref name="ref2"/>. |
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| | + | ===Knowledge Extension=== |
| | + | [[File: OsCIPK family Functional.png|left|thumb|260px|'''Figure 1.''' ''Functional gene network analysis of OsCIPK family members.(from reference <ref name="ref2"/>).'']] |
| | + | *From real-time RT-PCR analyses, ''Giong et al.'' identified 16 OsCIPK genes showing a significant up- or down-regulation in response to '''drought stress'''. Using the probable functional gene network tool, RiceNet, ''Giong et al.'' generated a hypothetical functional gene network based on 15 out of 16 OsCIPK proteins (Fig. 1)<ref name="ref2"/>. |
| | + | *More than 200 interactions mediated by these OsCIPK proteins. This network was further refined by integrating fold change data showing at least 1 log2-fold up-regulation (red colored nodes in Fig. 1) or less than -1 log2-fold down-regulation (green colored nodes in Fig. 1) under drought stress to all the elements in this network<ref name="ref2"/>. |
| | + | *Integrated subcellular localization data further enhances the feasibility of functional modules consisting of co-expressed functional groups such as CIPK and PPC and other components in the network(Fig. 1)<ref name="ref2"/>. |
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| − | You can also add sub-section(s) at will.
| + | *The calcineurin B-like protein–CBL-interacting protein kinase ('''CBL–CIPK''') signaling pathway in plants is a Ca<sup>2+</sup>-related pathway that responds strongly to both abiotic and biotic environmental stimuli<ref name="ref3"/>. The CBL-CIPK system shows variety, specificity, and complexity in response to different stresses, and the CBL–CIPK signaling pathway is regulated by complex mechanisms in plant cells<ref name="ref3"/>. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *National Center of Plant Gene Research (Wuhan), National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China |
| | + | *Department of Plant Molecular Systems Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea |
| | + | *Graduate School of Biotechnology, Kyung Hee University, Yongin 446-701, Korea |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Xiang Y, Huang Y, Xiong L. Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement[J]. Plant physiology, 2007, 144(3): 1416-1428. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Giong H K, Moon S, Jung K H. A systematic view of the rice calcineurin B-like protein interacting protein kinase family[J]. Genes & Genomics, 2015, 37(1): 55-68. |
| | + | </ref> |
| | + | * <ref name="ref3"> |
| | + | Yu Q, An L, Li W. The CBL–CIPK network mediates different signaling pathways in plants[J]. Plant cell reports, 2014, 33(2): 203-214. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
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| − | GeneName = Os01g0536000|
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| − | Description = Similar to CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.1.37) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein)|
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| − | Version = NM_001049794.1 GI:115437291 GeneID:4326419|
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| − | Length = 8329 bp|
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| − | Definition = Oryza sativa Japonica Group Os01g0536000, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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| − | AP = Chromosome 1:21126107..21134435|
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| − | CDS = 21126517..21126612,21127124..21127198,21127298..21127354,21128220..21128336,21128878..21128991<br>,21129310..21129432,21129581..21129670,21130500..21130625,21132677..21132730<br>,21132803..21132877,21132957..21133064,21133291..21133362,21133473..21133535<br>,21134110..21134280|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008394:21126107..21134435
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008394:21126107..21134435
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggtgggcggaggggcgctgcggcgggtggggaagtacgaggtggggcggacgatcggggaggggacgttcgccaaggtgaagttcgcgcagaacacggagagcggggagagcgtcgccatgaaggtggtcgaccgctcctccatcctcaagcacaagatggcggatcagattaagagagagatatctataatgaagcttgtgaggcatccgaatgtggttagactacacgaagtcttggcaagccggaagaagatatttataatcttggagttcatcactggcggtgaactatttgataaaataattcgtcatggaagactcaatgaagctgatgcacgcagatactttcagcagctcattgatggtgttgatttttgtcacagcaaaggtgtctaccatcgagatttaaagcccgaaaatctcctccttgattcccaaggaaatcttaaaatatcagactttggactcagcgcctggcctgctcagggtggtgcccttttacgtactacctgtggaaccccaaattatgttgccccagaggttctcagtcataaaggatatgatggagcacttgctgatacatggtcatgtggagttattctatatgtcctgttggcaggttatcttccatttgatgaagttgatttgactaccctttacgggaagatagagagtgcagaatattcattcccagcttggtttcctaatggtgccaagtcacttattcacagaattcttgaccctaatccagataaaagaatcaggatagaagagatcaggaatgatgaatggtttaagaagaattatgaacctaccagagaaattgaaagtgaagaagtcaatcttgatgatgtcaatgcagcttttgatgatcctgaggaagacgctgaccatactttagatgacgaagcaggacctttgacactcaatgcattcgacctaataattctatctcaaggcttgaaccttgcagcactatttgatcgccgacaggactatgacaagcttcaaaatagatttttatcacgcaaaccagcaaaggttatcatgtcaagcatggaggttgttgctcagtcaatggggtacaagacacacattcgcaattataagatgagggtggaaggtctaaatgcaaataagacaagtcatctcgcagttatgcttgaaatttttgaagttgccccatcgatcttcatgattgaactgcaaagagcagcgggagacacctccgattataacaagtttataaataattactgcagcaaattagacgatatcatttggaattttccaattgagaagagcaaatcaaggatatcgcggctatcgaagcgctag</cdnaseq>|
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| − | AA = <aaseq>MVGGGALRRVGKYEVGRTIGEGTFAKVKFAQNTESGESVAMKVV DRSSILKHKMADQIKREISIMKLVRHPNVVRLHEVLASRKKIFIILEFITGGELFDKI IRHGRLNEADARRYFQQLIDGVDFCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSAW PAQGGALLRTTCGTPNYVAPEVLSHKGYDGALADTWSCGVILYVLLAGYLPFDEVDLT TLYGKIESAEYSFPAWFPNGAKSLIHRILDPNPDKRIRIEEIRNDEWFKKNYEPTREI ESEEVNLDDVNAAFDDPEEDADHTLDDEAGPLTLNAFDLIILSQGLNLAALFDRRQDY DKLQNRFLSRKPAKVIMSSMEVVAQSMGYKTHIRNYKMRVEGLNANKTSHLAVMLEIF EVAPSIFMIELQRAAGDTSDYNKFINNYCSKLDDIIWNFPIEKSKSRISRLSKR</aaseq>|
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| − | DNA = <dnaseqindica>7824..7919#7238..7312#7082..7138#6100..6216#5445..5558#5004..5126#4766..4855#3811..3936#1706..1759#1559..1633#1372..1479#1074..1145#901..963#156..326#atcccccatctcaatggcgatgtcgagctgagcaccaccctagcggtggagtaggggagctgtggtcggcggcggccgccgccagttgggtgtctcggagtgagaccgggagaggcggcggagggagctcagggagggagggaggaggggcggcgatggtgggcggaggggcgctgcggcgggtggggaagtacgaggtggggcggacgatcggggaggggacgttcgccaaggtgaagttcgcgcagaacacggagagcggggagagcgtcgccatgaaggtggtcgaccgctcctccatcctcaagcacaagatggcggatcaggtgagcccccatctatctcttctgtttttttttcctttttttgttctctctatttgcgtgttgatcaagagattttgctgtactagcttagcttgggaattaattagtgtatgccacggatttgtctagcgccttgagacacagaatggatgagggagattgtttaattcgaccctcttttcatcctcttttgcgccaaattctactcggtttgtcaatggtgggtttgatgcttcatgtccaattggcgtctagcttgcagcttcctttccccacaacaaagtgttaacagtggtggtaccaggattgttgaatcgaatcgcaattttaaacttccgccgagcagtttgttcttctgtatatacctattaagatattgttgttataaaagaaaaaaaaaagtaaggtacctatgtcaagaagcacccctttgtaaaaaagaactcacaggtttatgcttgtaagggaaaggcagttttagctgttctagttttgtgttgttgagctgcgtaagttagctgaatcctgatgtatcagggtgataaaacaggagcttacttaattatttctgcagattaagagagagatatctataatgaagcttgtgaggcatccgaatgtggttagactacacgaagtacaccctctttcccttttctctctttaagttttgttgtttacttctttgttctctcttgctttttccaagtgctgattgggtgatcatatctgttctgttatgtgcaggtcttggcaagccggaagaagatatttataatcttggagttcatcactggcggtgaactatttgataaaatagtaaggccctgcttgttaatgataagtgtccttttcagtgtcattttctcgatatgacctatgaaaaaattgaagttaaattagttcttgtatctgttgcctagttgtctacctcattacttctggattgaacaatcgccacttgtgcttgttggatttaacacacaaaaatgagttttcaaatctatgttgaagcttagttattctgggaacaatgccatttcagattcgtcatggaagactcaatgaagctgatgcacgcagatactttcagcagctcattgatggtgttgatttttgtcacagcaaaggtgtctaccatcgagatttaaaggtgataagtcaaaagaaaaatacgaaaactttttgtgtttagtttgtgggctttttgattttattttgtatgtatgcagcccgaaaatctcctccttgattcccaaggaaatcttaaaatatcagactttggactcagcgcctggcctgctcaggtccatacctttctgaaggcttgtccaatattcatatccttttgtcgagttatttagtttgttcttgtgcagggtggtgcccttttacgtactacctgtggaaccccaaattatgttgccccagaggtgagtgacatctgaatcacatgctttgctttgagttttcctagatagaaaacattaaaattgtcttctgcaacaaagggtggtttaaatatgggttaattggatccatgccactgcaactttgccaaattgaaaaaatgccactactattcatcatatcggctacatgccactcgaaatttctaaaattggaaccatgccactccagtcagtttttccgtcctcctctctcacgccgtctctattcccgtcattatcccccctcccttcccatcctcctgctcctaggtggccggggacagcaccaccaccttcgtcgtcctcaccggcgcaagggtcggcggcgccggtgcacgaagacgaggctggcctgtggttcccgttcgcggactcgctggagaaggacatcttctcggacctcttctacgaggcgcccgtcgcggcggcggcaacggctgcggctgctggcctaggcgccgatggcgacagcgacggcgaaggcaagccttgcaaggacgatgcggcaatggcggaggagcgtggcgggccgggcgcggcgcgacctgatgccgccgcccaagtcgacgcccctcttctctttattccccacttctctccaccacgtccatgatgttagccgtcgcgccggggaacgggttgccggcacggaggttgttgtcggcgtccatcaccctgtacaccaccttgtgcgtcggcttgccgtgctcgtccacgccattctctgcaaagatttcacgtatctcactgtcaatttgacaaatgaactcatccaatccagcgacagcaacatctgtatggatttaacaagaatggaccaagcaagatcgaagcagtcggcggcttggcgccgcgggggctgcccatgccaagggcctcacggccgaggcaatgcggcggccgtggcgccgcatgtcggggtccccgaccgccgacactttgccgccgccattcgtctcgagtctcttgatggactgcgccaccaagtagcacgagatggcgaggacttgacggacccgtgggcggcggcgggggccgccgccgccaaggcgtccgcagaggccccgcgccgctggagcggaggcggagggcaagggacgccgagctgtccgcgctcgcgtcggccacccgtgaggctgtgaccgctcgcgccgccgtgttccgggagccgtccccggcgccgttggacgcgtcgtcgacggcggggcggcgcagagctcccgcccgtggtgctgcgcgcgtcgtcgctgatccagcggtggcgggagatcgaggcgatggggcccgccacgtcgcggccctacgacctggccttcgactccgacggcggctcgccgcgggccacgtggggtgcatcgtcaagaagctcagtggcacgtcgttgccgccgccgctgtactcgatccacgatgggaggtctcgggagccgctgctgccgtcctcgacgccatctgcggcgggagtgctcgggagctgccggcggcgtcgccgctgtcctttgcagtcgcacggagaaagaagagggaaatggaaacgattaaacggtggaacgagacggtgtgagagaggagacggaaaaagggacgagagtggcatggttctaattttaaaaatttctagtggcatgtagctaatatgatgaatagtagtggtattttttcaatttcgtatagttgcagtggcatggatccaattaaccctttaaatataccttcatcctaagatgtcagattactcagttaaacatgtgtgatggaatactcatacatttatccttcaggcaggttgagtaacattgttccaccgtgtaacttaagacatcttctctaaaaaaatgtaaaaaataaaaagtgatataactagaactgttttttatctctatactgaatgagccaaatatgcatgattgatatctcttgattctttatttggaaaaatgctttacttttcattctcagtaaaaccatgtgatgtgtttcatatgattatagataatgtgttcactgcaacctttaactccttgtatggatcaggttctcagtcataaaggatatgatggagcacttgctgatacatggtcatgtggagttattctatatgtcctgttggcaggttatcttccatttgatgaagttgatttgactaccctttacgggaaggtttgtttcttctaacctatggcaacttttttgaagctcaaataagtatattgcaacccatttatgattttgtgtcagtgtatatcatattggcacatgatctctttgtatggaagatcagatctcatgacatttacttgtatttgcttttactatacactatgtgcttacgtttattatctagccactcatttaagcatgattagtggtattagtttgtgaaatccatgtgaaaacaatatcaaacatactcggtacttctcagtgcatagatagctaagtagcttatgtaatgtagtgtgttgctagtagttaaagattacagatcctggcagtggctctgatacgtgagcatagtgatctcatacctgctttcctactgctgaaacattccggcaagtaagaaatgtaagcttgccgaaacaactaaccaactaaaaggaaattaacctcggcatcctttagaataaactagttaacatgctactactttcaataagagaattagcagagaagctggggagcacaacaacaatagcagactcattacacatggcttcatagctaaatcctctccttttcgctcttgtttctcttttctttttggttggtggaagtataaacatttgtattccattctagtaggactgattaagagatatatctatttgcatatttcaggttgagatgcatatagctatttttattttctagatttgaatattagttcaacatatgccttgatggatggaatagaagtttttatctaaaattgtttttcttttgtacagaatatacaaatttatatctgtctatttgcttaatacagatagagagtgcagaatattcattcccagcttggtttcctaatggtgccaagtcacttattcacagaattcttgaccctaatccagataaagtaagtaaagttatagaagtgtttagctaaagaaaatctccattggctgatatgaattcaatgaattatagtttagatacatcacacctctagatactgattttcattggcattttgttgactcaatatgaattttgacttggaacagagaatcaggatagaagagatcaggaatgatgaatggtttaagaagaattatgaacctaccagagaaattgaaagtgaagaagtcaatcttgatgatgtcaatgcagcttttgatgatcctgaggtatttatgcttactcttgtcttagaactgtttttggaaaggaatcattgcatatatatgacattttgtatgtgctacaatcttcaaaatatgctccaaatgaaagcctcggaatggaatttcagttgctccagataagaactattagcagtaactgaaactggaatttcagttgctccattgttaattatgaaatttgatcagaaagcctgtttcgcactgaagctatgctgtacgtttttacgggagctctattgtgccttttacctgtcattatataaatatataatttgtggtcctttttctgtgtgatttcaggaagacgctgaccatactttagatgacgaagcaggacctttgacactcaatgcattcgacctaataattctatctcaaggcttgaaccttgcagcactatttgatcgccgacaggtatggtgcaagacattttgtgatgtctagtgttttcgcaaactaaaagttggagtacaggactaacactgttattatgtcatgtcccagttctacattttttaattaatacgctatttgggcattaaatcatggttcttattgttattatcggtgaatattcagtttagtttaaatagtgtacatgtgatttgctgcggcagtttacattatttttgcaatcatgtattatatgcatagactaaagaaaatccatttgattcaaattattttaacatataaccagaggaaaaagacaatgatagaccatcccatctgatgatctttgttcctcttctctcaaacacaccttaatattgttgctgcccaacttgacacaattcaaactatcctctatttttattatttttgtatgtactccgcaatactggtattgcctagaagcttgtttaaatgtccatggtttaccctgtgtgtgagttttatagataattatgggtttcttctcctcggacctaatgcttgatgccttgatctacaggactatgacaagcttcaaaatagatttttatcacgcaaaccagcaaaggttatcatgtcaagcatggaggttgttgctcagtcaatggggtacaagacacacattcgcaattataaggtaaagtttgttgccccacaccctatagcttgttacaacatcacttacctattatacagatattgcaaatcatcttctccttcatcttagctgacaagcagttgttctatctattttgtgatagttagaatgtaactgttttttggttcattgtacagacatacagacatgaggatctgtagttctgttaaggtctaaattgtatcagaagaagcagcaccctgtcttgaaaagcttattgttttctggaatgtgaatatgttattttaaagtcaaataaatttcttattatcttcaatgtatcaagcctcatgtttgaacaagttgtcaagagaacgtcatttgatatgctggcatttacatttgaaattattgtctaagtagcaaccacaaactacctctgaattgacacaaaaagcatgatgatatcaaaagtattaattcattagaatgtgtttaggttgctggtctaaggggttacaataaactgtaccccaattttttgtacatatatatgcacaagttttatcaacctgagtaaacagtacttcatttcagtccttttaccactggtttaacagtattgaatggtattgccagtgatacatctctttaatttcttgtattgtttgtttgtggcctttttttttcccttttggcataacattgtctggatgctggtaaattgtgatcaaatgcgggcttacagttttaatattattcatgctgttattttgcaagtaaaagagttataatgttttgtcttgtgattttgattctcaaaacttcttttactgctaattagttagcattaccatggacatatttgattccttacatctagttgtgctattaatatattcagatgagggtggaaggtctaaatgcaaataagacaagtcatctcgcagttatgcttgaagtgagtcttgcctcttttgtaatgaagtacatctgttgttttattgccttctattatggattactccaatccttttcatcctgagtttcctctggtcagatttttgaagttgccccatcgatcttcatgattgaactgcaaagagcagcgggagacacctccgattataacaaggtcagatgcaaagagcctttcatacttgcatcatgctgtttcttgaggtcctacagccgatacaccatgtatagctaaatgcacctgatacatctaggctgtagacagcctagtgttataaagctggaaaatattttgcaatgttgttaccacagagctttacggagactgtctagaaaatagttaggtactagtagtaccagactgatgtgggacctacctgtgtacatgcatggaccgtactattcatttgctgctgtcttatttttcagtttgtgttttgtcaaagctaaataagcatgcctaatgttaaaggttaggcatgggcaaatatattcaagtagtttcttcacccaagaaatctgaaatagtaatgcttataatttcctgatgaaacttcttgcttcactagatatttttgtgaattgtataatgtaaaataaattgatctggataatggcttttgatttgctaagacatgcacaactaactccgcgtgtcttatgtgcagtttataaataattactgcagcaaattagacgatatcatttggaattttccaattgagaagagcaaatcaaggatatcgcggctatcgaagcgctagtctgctttgacatccatcatttgtatgctgttgttcaactctattttcatcttctattgccataatatttgcatttacctctacttattacctcttaaccataccggaatgctcaccactattgcaggtactatgtgtaatctaatgctatgcagcttgagtggtattgggtttgttagtggatgtatttgtagagattgccaattcaattcatctctgatcttttagttataagagatgaccatgtacaaagggccactgaaagttttggcatctcagtttctctgtacaatgtttgcagcgaggtatattaaacagtttgactgaccgccgctccctgctcatcaacacgctttgtagtttgtctcaagatgtattaatttctccctgctccattagcagcttgcatc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049794.1 RefSeq:Os01g0536000]|
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| − | }}
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| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
