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| | ==References== | | ==References== |
| − | Please input cited references here.
| + | |
| | + | <references> |
| | + | <ref name="pmid:17080612">Tanaka, N; Matsuoka, M; Kitano, H; Asano, T; Kaku, H; Komatsu, S. (2006) gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.Plant, cell & environment 29: 4.</ref> |
| | + | <ref name="pmid:19756991">Sun, Q; Hu, C; Hu, J; Li, S; Zhu, Y. (2009) Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.The protein journal 28: 7-8.</ref> |
| | + | <ref name="pmid:8790301">Snowden, KC; Buchhholz, WG; Hall, TC. (1996) Intron position affects expression from the tpi promoter in rice.Plant molecular biology 31: 3.</ref> |
| | + | <ref name="pmid:8278510">Xu, Y; Hall, TC. (1993) Cytosolic triosephosphate isomerase is a single gene in rice.Plant physiology 101: 2.</ref> |
| | + | <ref name="pmid:12232342">Xu, Y; Yu, H; Hall, TC. (1994) Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.Plant physiology 106: 2.</ref> |
| | + | <ref name="pmid:8108523">Xu, Y; Harris-Haller, LW; McCollum, JC; Hardin, SH; Hall, TC. (1993) Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).Plant physiology 102: 2.</ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | GeneName = Os01g0147900|
| |
| − | Description = Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase)|
| |
| − | Version = NM_001048551.1 GI:115434515 GeneID:4325211|
| |
| − | Length = 3734 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os01g0147900, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| |
| − | AP = Chromosome 1:2588835..2592568|
| |
| − | CDS = 2589074..2589121,2589214..2589296,2589414..2589492,2589622..2589716,2590198..2590330<br>,2590601..2590685,2591040..2591163,2591297..2591372,2592479..2592517<br>|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008394:2588835..2592568
| |
| − | source=RiceChromosome01
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008394:2588835..2592568
| |
| − | source=RiceChromosome01
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgggccgcaagttcttcgttggtggcaactggaaatgcaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttgaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctgaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaa</cdnaseq>|
| |
| − | AA = <aaseq>MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSP PYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSL LGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTN VVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANC KELAAKPDVDGFLVGGASLKPEFIDIINSATVKSA</aaseq>|
| |
| − | DNA = <dnaseqindica>3448..3495#3273..3355#3077..3155#2853..2947#2239..2371#1884..1968#1406..1529#1197..1272#52..90#cccccccccccccccccgcgtccagttccatctaatcagcttctcgtcgagatgggccgcaagttcttcgttggtggcaactggaaatgcgtaatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcgatttagggagtgttcgttaggtggagataggagagattgtctctcgttttccgcgcgcacgcttttcaaactactaaacggtgcgttttttgcaaaaaatttcaataggaaagttgctttaaaaaatcatattaatccatttttgaaatttaaaatagttaatactcaattaatcatgagctaatggcttacctcgttttgcgtatcttcccaatctcctcaatccccttctcttcaaacactcccttagtgatttaagggtggagattgccatgaaggggatggatcttttttttttcttgaaacattaggagagatttttccacgctgatccagatcggtgtagaaaccaccctggttggttgagaagaatggatggatggcggggtttttgagatccggataatatatctgaagatttggtcttcgttttcagtccggtcctaatcctaggaaccagatgcgattagctgctacatatgctactcctacacgattagccgcgttttttggcgtttcaacgcgagacactcttagtgggaaatttggagttcactgatcttcaggtgttccatcttgcgcaaagtgtgatgtcgggtatgtttagctcggttcagacttcagagtctgaaacttttatgaggtgcatgcgtgtattatccagtgtctagaatttgtctctgacgtgaattatcaagtgtctagaatttaagtcagatcaaggagccaacacccggagatttattaatcaaatggtgcatattagcttttgtcaatcgtgatttctagctttgaactgttgttaacttacacaagaaacgcgtcatgcacttggagaacggtagtggtattgatgcttcttgtcgaatttctcgtatgcatatatgctgagaaatgcgaaagaaaagcacgggtattttgtgtgatttcaatgtcgtagtgtggtctgtatcaatcttcaaatatttgcttgctaaagactgacatgattcattttgatgtaacagaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttggtatgtgggactacgttgcagattgattccttttaagtgcgatattttctgtttttatcattcccacgaaatctgtatacaaaaaaactgcatggtaggacatgcttatcaatctggaaccattgtgctgcagaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcaggttagttatcagttctgtttcagttgtacacccaacatgctgtaatgatcaccagaaggttagctacaaacctacttgcagaaagatgcgccattacgctgtttgattaggtctcatatttaacatcacccagaaacaatgccatcttttcaagctagcatgccatcttttcaagctagcctgccttcacttggtattacatgttgcatgttgttatatttgctcagtcacagttagtgttgtatgattggcagtctcaatagccgtcttcgcttttaggcgaggttataagccattcaccattgaactcatcttttgtttaagttggttgttaatctattatttttaatgcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgaggtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggataacggtcactggagacaatattgtagctacttagctggcactaaatttgatcctaatccaatatatcaccaacttaattttacaaaggtgatcttgttcgctacaaattggtggatgatctgctgtgaggttttcgtatcataatcatctaatggtttcctgctctttcctgaattgcagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctggtatctaacctctacttttggtctttttgactctgttgaattccttatccatttgtgtactcgtttgatctaaatggtttgctgttcgcctatatgttcaaatggtatctaggataattttccattcattgaagctttatcttgcgaaagttagttagatctcttttgatgcactactcatttcttgtttggctaaattctacacattctacatcagaaaaaaaaaatcttgctaaaagtcttataagccacttggttatcacatattcactatgtgggagcactctaaaaatgggaacatctggtgatcagatgaatccacaggcagtaatgtaatgtaatagttcaagtgattacttgttcaagtggttaatggtttaatctagaccttaatgtaatgtctcatagttagcatcatttgataaaagattagctcatcacatgagaattcaggctgaaatgactatggactgttttacagaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtaagtttcttatattgataagcacacaaagtgttcattcatgaacttctgcacgttccataattgttacctatgctctagataaaatatcttgtttaaacaaccatctggtttgtattattgtatcaggtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaaggtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaagatcttcaccccattcaccttcggcgtgggaagatgtctgaagaggatcatacctttttctgtgcttatgtaatgctagtagttttgtgctggagcagctactctttttcctccccttcacttccctgaagctacctgcagcttgagcaatgctaataatgcacaccactgaacatactaccataccaataatgtttagctccttttgtcgtgagttattatcatgtgagtttcagatc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001048551.1 RefSeq:Os01g0147900]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
| |
| − | [[Category:Chromosome 1]]
| |
Please input one-sentence summary here.
Annotated Information
Function
Among the proteins hyper-accumulated in gid1 were osmotin, triosephosphate isomerase, probenazole inducible protein (PBZ1) and pathogenesis-related protein 10[1].
Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA[2].
A series of promoter-GUS fusion constructs containing a portion of the rice triosephosphate isomerase (tpi) promoter, the first tpi intron, and the gene encoding bacterial beta-glucuronidase (GUS) were made[3].
A cDNA clone encoding rice (Oryza sativa L.) cytosolic triosephosphate isomerase (TPI), an important glycolytic enzyme, was isolated and characterized[4].
In rice (Oryza sativa L.), cytosolic triosephosphate isomerase (TPI) is encoded by a single gene[5].
Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.)[6].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
- ↑ Tanaka, N; Matsuoka, M; Kitano, H; Asano, T; Kaku, H; Komatsu, S. (2006) gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.Plant, cell & environment 29: 4.
- ↑ Sun, Q; Hu, C; Hu, J; Li, S; Zhu, Y. (2009) Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.The protein journal 28: 7-8.
- ↑ Snowden, KC; Buchhholz, WG; Hall, TC. (1996) Intron position affects expression from the tpi promoter in rice.Plant molecular biology 31: 3.
- ↑ Xu, Y; Hall, TC. (1993) Cytosolic triosephosphate isomerase is a single gene in rice.Plant physiology 101: 2.
- ↑ Xu, Y; Yu, H; Hall, TC. (1994) Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.Plant physiology 106: 2.
- ↑ Xu, Y; Harris-Haller, LW; McCollum, JC; Hardin, SH; Hall, TC. (1993) Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).Plant physiology 102: 2.
Structured Information
