Difference between revisions of "Os01g0147900"

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(Created page with "{{JaponicaGene| GeneName = Os01g0147900| Description = Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase)| Version = NM_001048551.1 GI:11...")
 
 
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{{JaponicaGene|
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Please input one-sentence summary here.
GeneName = Os01g0147900|
 
Description = Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase)|
 
Version = NM_001048551.1 GI:115434515 GeneID:4325211|
 
Length = 3734 bp|
 
Definition = Oryza sativa Japonica Group Os01g0147900, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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Among the proteins hyper-accumulated in gid1 were osmotin, triosephosphate isomerase, probenazole inducible protein (PBZ1) and pathogenesis-related protein 10<ref name="pmid:17080612"/>.
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Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA<ref name="pmid:19756991"/>.
AP = Chromosome 1:2588835..2592568|
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CDS = 2589074..2589121,2589214..2589296,2589414..2589492,2589622..2589716,2590198..2590330<br>,2590601..2590685,2591040..2591163,2591297..2591372,2592479..2592517<br>|
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A series of promoter-GUS fusion constructs containing a portion of the rice triosephosphate isomerase (tpi) promoter, the first tpi intron, and the gene encoding bacterial beta-glucuronidase (GUS) were made<ref name="pmid:8790301"/>.
GCID = <gbrowseImage1>
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name=NC_008394:2588835..2592568
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A cDNA clone encoding rice (Oryza sativa L.) cytosolic triosephosphate isomerase (TPI), an important glycolytic enzyme, was isolated and characterized<ref name="pmid:8278510"/>.
source=RiceChromosome01
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preset=GeneLocation
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In rice (Oryza sativa L.), cytosolic triosephosphate isomerase (TPI) is encoded by a single gene<ref name="pmid:12232342"/>.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.)<ref name="pmid:8108523"/>.
name=NC_008394:2588835..2592568
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source=RiceChromosome01
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===Expression===
preset=GeneLocation
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Please input expression information here.
</gbrowseImage2>|
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CDNA = <cdnaseq>atgggccgcaagttcttcgttggtggcaactggaaatgcaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttgaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctgaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaa</cdnaseq>|
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===Evolution===
AA = <aaseq>MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSP                    PYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSL                    LGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTN                    VVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANC                    KELAAKPDVDGFLVGGASLKPEFIDIINSATVKSA</aaseq>|
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Please input evolution information here.
DNA = <dnaseqindica>3448..3495#3273..3355#3077..3155#2853..2947#2239..2371#1884..1968#1406..1529#1197..1272#52..90#cccccccccccccccccgcgtccagttccatctaatcagcttctcgtcgagatgggccgcaagttcttcgttggtggcaactggaaatgcgtaatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcgatttagggagtgttcgttaggtggagataggagagattgtctctcgttttccgcgcgcacgcttttcaaactactaaacggtgcgttttttgcaaaaaatttcaataggaaagttgctttaaaaaatcatattaatccatttttgaaatttaaaatagttaatactcaattaatcatgagctaatggcttacctcgttttgcgtatcttcccaatctcctcaatccccttctcttcaaacactcccttagtgatttaagggtggagattgccatgaaggggatggatcttttttttttcttgaaacattaggagagatttttccacgctgatccagatcggtgtagaaaccaccctggttggttgagaagaatggatggatggcggggtttttgagatccggataatatatctgaagatttggtcttcgttttcagtccggtcctaatcctaggaaccagatgcgattagctgctacatatgctactcctacacgattagccgcgttttttggcgtttcaacgcgagacactcttagtgggaaatttggagttcactgatcttcaggtgttccatcttgcgcaaagtgtgatgtcgggtatgtttagctcggttcagacttcagagtctgaaacttttatgaggtgcatgcgtgtattatccagtgtctagaatttgtctctgacgtgaattatcaagtgtctagaatttaagtcagatcaaggagccaacacccggagatttattaatcaaatggtgcatattagcttttgtcaatcgtgatttctagctttgaactgttgttaacttacacaagaaacgcgtcatgcacttggagaacggtagtggtattgatgcttcttgtcgaatttctcgtatgcatatatgctgagaaatgcgaaagaaaagcacgggtattttgtgtgatttcaatgtcgtagtgtggtctgtatcaatcttcaaatatttgcttgctaaagactgacatgattcattttgatgtaacagaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttggtatgtgggactacgttgcagattgattccttttaagtgcgatattttctgtttttatcattcccacgaaatctgtatacaaaaaaactgcatggtaggacatgcttatcaatctggaaccattgtgctgcagaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcaggttagttatcagttctgtttcagttgtacacccaacatgctgtaatgatcaccagaaggttagctacaaacctacttgcagaaagatgcgccattacgctgtttgattaggtctcatatttaacatcacccagaaacaatgccatcttttcaagctagcatgccatcttttcaagctagcctgccttcacttggtattacatgttgcatgttgttatatttgctcagtcacagttagtgttgtatgattggcagtctcaatagccgtcttcgcttttaggcgaggttataagccattcaccattgaactcatcttttgtttaagttggttgttaatctattatttttaatgcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgaggtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggataacggtcactggagacaatattgtagctacttagctggcactaaatttgatcctaatccaatatatcaccaacttaattttacaaaggtgatcttgttcgctacaaattggtggatgatctgctgtgaggttttcgtatcataatcatctaatggtttcctgctctttcctgaattgcagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctggtatctaacctctacttttggtctttttgactctgttgaattccttatccatttgtgtactcgtttgatctaaatggtttgctgttcgcctatatgttcaaatggtatctaggataattttccattcattgaagctttatcttgcgaaagttagttagatctcttttgatgcactactcatttcttgtttggctaaattctacacattctacatcagaaaaaaaaaatcttgctaaaagtcttataagccacttggttatcacatattcactatgtgggagcactctaaaaatgggaacatctggtgatcagatgaatccacaggcagtaatgtaatgtaatagttcaagtgattacttgttcaagtggttaatggtttaatctagaccttaatgtaatgtctcatagttagcatcatttgataaaagattagctcatcacatgagaattcaggctgaaatgactatggactgttttacagaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtaagtttcttatattgataagcacacaaagtgttcattcatgaacttctgcacgttccataattgttacctatgctctagataaaatatcttgtttaaacaaccatctggtttgtattattgtatcaggtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaaggtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaagatcttcaccccattcaccttcggcgtgggaagatgtctgaagaggatcatacctttttctgtgcttatgtaatgctagtagttttgtgctggagcagctactctttttcctccccttcacttccctgaagctacctgcagcttgagcaatgctaataatgcacaccactgaacatactaccataccaataatgtttagctccttttgtcgtgagttattatcatgtgagtttcagatc</dnaseqindica>|
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001048551.1 RefSeq:Os01g0147900]|
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You can also add sub-section(s) at will.
}}
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[[Category:Genes]]
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==Labs working on this gene==
[[Category:Japonica mRNA]]
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Please input related labs here.
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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==References==
[[Category:Japonica Chromosome 1]]
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[[Category:Chromosome 1]]
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<references>
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<ref name="pmid:17080612">Tanaka, N; Matsuoka, M; Kitano, H; Asano, T; Kaku, H; Komatsu, S. (2006) gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.Plant, cell & environment 29: 4.</ref>
 +
<ref name="pmid:19756991">Sun, Q; Hu, C; Hu, J; Li, S; Zhu, Y. (2009) Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.The protein journal 28: 7-8.</ref>
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<ref name="pmid:8790301">Snowden, KC; Buchhholz, WG; Hall, TC. (1996) Intron position affects expression from the tpi promoter in rice.Plant molecular biology 31: 3.</ref>
 +
<ref name="pmid:8278510">Xu, Y; Hall, TC. (1993) Cytosolic triosephosphate isomerase is a single gene in rice.Plant physiology 101: 2.</ref>
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<ref name="pmid:12232342">Xu, Y; Yu, H; Hall, TC. (1994) Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.Plant physiology 106: 2.</ref>
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<ref name="pmid:8108523">Xu, Y; Harris-Haller, LW; McCollum, JC; Hardin, SH; Hall, TC. (1993) Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).Plant physiology 102: 2.</ref>
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</references>
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 +
==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Latest revision as of 04:32, 14 May 2015

Please input one-sentence summary here.

Annotated Information

Function

Among the proteins hyper-accumulated in gid1 were osmotin, triosephosphate isomerase, probenazole inducible protein (PBZ1) and pathogenesis-related protein 10[1].

Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA[2].

A series of promoter-GUS fusion constructs containing a portion of the rice triosephosphate isomerase (tpi) promoter, the first tpi intron, and the gene encoding bacterial beta-glucuronidase (GUS) were made[3].

A cDNA clone encoding rice (Oryza sativa L.) cytosolic triosephosphate isomerase (TPI), an important glycolytic enzyme, was isolated and characterized[4].

In rice (Oryza sativa L.), cytosolic triosephosphate isomerase (TPI) is encoded by a single gene[5].

Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.)[6].

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

  1. Tanaka, N; Matsuoka, M; Kitano, H; Asano, T; Kaku, H; Komatsu, S. (2006) gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.Plant, cell & environment 29: 4.
  2. Sun, Q; Hu, C; Hu, J; Li, S; Zhu, Y. (2009) Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.The protein journal 28: 7-8.
  3. Snowden, KC; Buchhholz, WG; Hall, TC. (1996) Intron position affects expression from the tpi promoter in rice.Plant molecular biology 31: 3.
  4. Xu, Y; Hall, TC. (1993) Cytosolic triosephosphate isomerase is a single gene in rice.Plant physiology 101: 2.
  5. Xu, Y; Yu, H; Hall, TC. (1994) Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.Plant physiology 106: 2.
  6. Xu, Y; Harris-Haller, LW; McCollum, JC; Hardin, SH; Hall, TC. (1993) Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).Plant physiology 102: 2.

Structured Information