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| Line 20: |
Line 20: |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]] |
| − | GeneName = Os10g0548200|
| |
| − | Description = Tetratricopeptide-like helical domain containing protein|
| |
| − | Version = NM_001071834.1 GI:115483263 GeneID:4349298|
| |
| − | Length = 7561 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os10g0548200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
| |
| − | AP = Chromosome 10:21901299..21908859|
| |
| − | CDS = 21901475..21901662,21901743..21901946,21902109..21902752,21903004..21903243,21903339..21903433<br>,21903542..21903915,21904059..21904110,21904279..21904497,21904877..21904942<br>,21905054..21905111,21905205..21905326,21905646..21905817,21905911..21906158<br>,21906236..21906316,21906388..21906528,21906693..21906785,21906876..21906926<br>,21907030..21907113,21908026..21908148,21908248..21908490,21908586..21908666<br>,21908752..21908763|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008403:21901299..21908859
| |
| − | source=RiceChromosome10
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008403:21901299..21908859
| |
| − | source=RiceChromosome10
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgcctgaaaaggcggcggaggccaacctccgcaagcagctggagcaaaccctcgccggcgagccatccagcccgctccaccactacaacctcggcgtcttcctatgggaccgcgcggaggcggcggcgagggaggagggcgaggaggaggaggaggtgaggcggctccgtgcggcggcggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgcttcctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcgggcggcgacgctcaaccctgatgatgccgaggctggggaggcggtctgtgatttgctagatttggagggcaaggaaagcttggagatcgctttgtgcaaggaggcagctggcaagtcaccccgggcattttgggcgttccggaggttggggtacttacaggttcatcagaagaaatggtcagaggctatacagagccttcagtatgcaatacgaggttacccaacatgtgcagatttatgggaagcactcggtctggcataccaccgtttgggcatgtttactgcagcagtaaagtcgtatgggcgagctgttgaactggatggttccaaggtctttgcgttgatagaaagtggaaacatccagctaatgcttggttattttagaaagggtgttgaacagttccgctctgccttggagatggctcctcaaaatcattccgcgtactttggtcttgcttctgcattgcttgcttgggcaaggcagtgtgtaatgactggggcctttggctgggcagctagtctgttgaaggaagcatgcaaagctgccaaagtttgtacttctttgactggaaacctttcctgtgtttggaaactgcatggagatgctcagctcgcacttgcaagatgctttccatggggtgatggtaatatcaaggggggtatggatgatggtactttcaggactactgtacttgagtggagaaatacatgtttgttggctgcaaatggtgcaaaattctcataccaacgagctttgcatctcactccctgggaagctaatattcacaatgacactgctatatgtcttgatctcatttataccattgaggagaataatagtctagatcccataacttgggaactgccagagaaaatgtcgttgggtgggttgatactggaaccagtcaataaggatttttgggttacattgggctcggtgtcaagtaatcaagctttaaaacagcattcttttatcagagcactgcatcttgatatgtctctctctgaagcttgggcataccttggaaagatttacaggcattcaggtgataagcagttggcaagacaagcatttgatcgagctcgaagcattgatccttcactggccttgccatgggcaggaatgtcagctgaaaattaccaccagcctggggatgggccagtaaatgaatgttttgaaagctgcttgcgggctgtgcagatacttcctcttccagagttccagattggtcttggaacaattgctgctcgttctggtgaacttctatcacctcaggtattgatggctgtaaggcaagctgttcaacgggcacctcattaccctgagtcgcacaacataaatggcttggtttctgaagtgcgatcagacttccaatctgcaattgcatcgtaccgacaagcaaaatttgctttagatatgatgcgcaactccaaaacagactgcagatgtcatattgctgatatttccgtgaatcttgcccggtcactatgtaagactggtcttgcaactgaggcagtgcgggagtgcgaagaattgaaaagacaaggatttctgaatgatgacggattgcagatatatgctctttcattatggaaacttggtcggcatgatgaagctctttcagtatcaagaaacttggctgaaaacttatcgagtatgaagcaggagagtgcaactgcagctttaggattcatatgcacgttgacatacaacatctctgggaaggactctgcagctgcggtcattcataaactgcctggtcaactcaattacagcacacagctgaaatttattatctctgcattagatgctttacagccaaacaagcgttttcagttaccccagctgagtatgcctcctaggcttacatcgtatgaagtcatgagtgaagtccactcaaatattgctcttggaaatgctattggtggggaatcagacaagtttttaagggttgatggtggcctgtcttacctgaaaaaggttctacacatgtatcccgactgcagtttagtaagaaaccaacttggatctctgctactgtcaagtgaagattggatggcttctcataaagcagtaagggttacttcattgtcccggggatatacatccaataggggcttaagatctccacaccaaattcaagcatgtgcagcagtttcttgctatgctacctgcacttcttacccaaagttctcttttccaacatgtgaagatcaatacctaagcggatacaatgcaatatgccgcctgcaaaggtgggttcatctagaaccgtggaaccaagatgcacgtcgcctccttgtacttacccttttccaaaaagcacgtgaagaaaagtatccgaaacatatctgcaccattttgaagaggctgattttgcaagttctctccagtggtagcaattcacaagacaataaggtggttcagtatgggaactacttgttacttcttgtggcttcagaggttagtttgcaatctggtgaccatggcaactgtattgctcaagctactgaagctcttggagtaacttcttcgagcgtggattctttctttgcacacttgcaactgtgtcgggcctatgtgatgcaaggcaatcttttgaactctaggagtgagtacatgaaatgcctgcaaaaccgtacagatactgaaattggctgggtaatacttaagcaacttgcatctatatgttcactggagggtacccctgatgaaatagagatacatctcggaggatgcgttgaaaggaaaggtagcaatgcatccaaatggatgtctcttttttatctagcatgcgctcagtgttcagtatggaatgaggactttgcaagtgctgaaaaagctattgctcaggcatgtgctgaaggggatcctgacagctgtgtcttatttctcaacggcgcaatttgtatggacattgcttggaggttcgcggcccctcaatttatagcccgtgcagcttccagcctcagaaaggcacagcagaaatcacttgcttctttacctattgtgtccctcttactggcccaagcagaaggcagccttggctccaaagccaagtgggagaaaaaccttcgtctagagtggttctcatggcccccagaattgaggcctgctgagctctatttccagatgcatcttctggcaacgcagtcaagtgcagcaacttcccagcagaaccagctagtggaaaccatgcaaaccccagagaagtggcttctcagggcgatacacctgaacccgtcgtgctctaggtactggacggctctgatgcaactcgtgtacgtgtaa</cdnaseq>|
| |
| − | AA = <aaseq>MPEKAAEANLRKQLEQTLAGEPSSPLHHYNLGVFLWDRAEAAAR EEGEEEEEVRRLRAAAAERFLAAAKLDPNDGVPFRFLGHHYALAGDAQRAAKCYQRAA TLNPDDAEAGEAVCDLLDLEGKESLEIALCKEAAGKSPRAFWAFRRLGYLQVHQKKWS EAIQSLQYAIRGYPTCADLWEALGLAYHRLGMFTAAVKSYGRAVELDGSKVFALIESG NIQLMLGYFRKGVEQFRSALEMAPQNHSAYFGLASALLAWARQCVMTGAFGWAASLLK EACKAAKVCTSLTGNLSCVWKLHGDAQLALARCFPWGDGNIKGGMDDGTFRTTVLEWR NTCLLAANGAKFSYQRALHLTPWEANIHNDTAICLDLIYTIEENNSLDPITWELPEKM SLGGLILEPVNKDFWVTLGSVSSNQALKQHSFIRALHLDMSLSEAWAYLGKIYRHSGD KQLARQAFDRARSIDPSLALPWAGMSAENYHQPGDGPVNECFESCLRAVQILPLPEFQ IGLGTIAARSGELLSPQVLMAVRQAVQRAPHYPESHNINGLVSEVRSDFQSAIASYRQ AKFALDMMRNSKTDCRCHIADISVNLARSLCKTGLATEAVRECEELKRQGFLNDDGLQ IYALSLWKLGRHDEALSVSRNLAENLSSMKQESATAALGFICTLTYNISGKDSAAAVI HKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPPRLTSYEVMSEVHSNIALGNA IGGESDKFLRVDGGLSYLKKVLHMYPDCSLVRNQLGSLLLSSEDWMASHKAVRVTSLS RGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQYLSGYNAICRLQRWVHL EPWNQDARRLLVLTLFQKAREEKYPKHICTILKRLILQVLSSGSNSQDNKVVQYGNYL LLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQLCRAYVMQGNLLNSRSE YMKCLQNRTDTEIGWVILKQLASICSLEGTPDEIEIHLGGCVERKGSNASKWMSLFYL ACAQCSVWNEDFASAEKAIAQACAEGDPDSCVLFLNGAICMDIAWRFAAPQFIARAAS SLRKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAELYFQMH LLATQSSAATSQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLVYV</aaseq>|
| |
| − | DNA = <dnaseqindica>7198..7385#6914..7117#6108..6751#5617..5856#5427..5521#4945..5318#4750..4801#4363..4581#3918..3983#3749..3806#3534..3655#3043..3214#2702..2949#2544..2624#2332..2472#2075..2167#1934..1984#1747..1830#712..834#370..612#194..274#97..108#gtttcctttccccacacttcatcccccccacttccaccacgccgccgtcgtcgccgccgccgccgccgccggcggtcgcccgacctcgccggcgatatgcctgaaaaggtatcccactctgtccatctctcacttctccatctctctcctcacttcctctggcgctcaccctttttggttttctcctcttcaggcggcggaggccaacctccgcaagcagctggagcaaaccctcgccggcgagccatccagcccgctccaccactacaacctcgtaaccttcgtcatcccgttgcacgaatcctcgccgtggctgcggctctcgctcctccattgcgggcttatcacgcggtagtcgtgtgcgtgcagggcgtcttcctatgggaccgcgcggaggcggcggcgagggaggagggcgaggaggaggaggaggtgaggcggctccgtgcggcggcggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgcttcctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcgggcggcgacgctcaaccctgatgatgccgaggctggggtgggttggaatgcatatgagcgtgtgcctcgaaggtgtttgttcttttgcctgtgagggtgttttggtatgatatgctgtttgtgtggtttggtgcaggaggcggtctgtgatttgctagatttggagggcaaggaaagcttggagatcgctttgtgcaaggaggcagctggcaagtcaccccgggcattttgggcgttccggaggttggggtacttacaggtatctatctatccttggttggagttgcttgacagcttgagtatattgttgattgaagtaatcatgtccgtaatacttgtgatcaactctggctccacctaaaggggcaaatttgcaaaatattatggcttcattcgatggaatagatccatatggactggttttcaatcacaccatctcagacacacccaaacaaagcctacaggtattagttactgtgatcccaagtcccaacactgttgagataattaaattctgacccaatctagggctagtccaagcttaagtccccatatgcatgcctttcgatttaccaaaatgtaataccattcatatgccattaatatatccagtgccagtttctttcacgccatgaccaccagggtattcaccttccttcacgtcctttagcctcatactagcagatagtattggcgtattggcatgttcctgtcattttggattagttgatagagaatatgtggaaatctataggacaacatggctagtttaggcttgacatttcgcatctctgcaatacctagttttggagccttatctctaatcaaagctgtgactatatcagcctgtcaggcctgctttgatagggagaataggatccaaatccttaggatttgtatcatcccaaaggaaaaagaacaccccgttcttcttcaaaacaaaccctaaattaacaatgtccattgcccagctataatctccaacttttgcttgcttaggaaaatgtaggttttttcctggagcaaggaacaagtagactatgtgctttgcttaaagctaaagttatgcggttaacatctctagatttttcttcatagttttcttgtttatgcatgctaaattatgcactgatgtattttcaataagtattgacaattatggggcatttaggttcatcagaagaaatggtcagaggctatacagagccttcagtatgcaatacgaggttacccaacatgtgcagatttatgggaagtgggtattttttccccttgtttcctttattttgttaatgctggtgaaatctaagtcaggcatgctatttgtatgtaattaatattccatattatggtattaggcactcggtctggcataccaccgtttgggcatgtttactgcagcagtaaaggtgtgttacttttttttagcatcattagtgaatgctgcagtatactatattgaggcttctgaatatgcttaattcagtttatgctggcagtcgtatgggcgagctgttgaactggatggttccaaggtctttgcgttgatagaaagtggaaacatccagctaatgcttggttattttagaaaggtaggaatttttttcacttaatggaactattatattactagatatacacaattttatcagcactatgtataatttaccattgcaaattctatgccagccctttactgctgctaccgctaataatttccatgatcttatacgtgttgggaaatacgcaatgccagggtgttgaacagttccgctctgccttggagatggctcctcaaaatcattccgcgtactttggtcttgcttctgcattgcttgcttgggcaaggcagtgtgtaatgactggggcctttggctgggcagctagtctgttgaaggtatttggacactagtcttggtttcaattgaaacatatcctgctatattgtctcagtgtagtttgttctaggaagcatgcaaagctgccaaagtttgtacttctttgactggaaacctttcctgtgtttggaaactgcatggagatgctcaggtattctctattttactgttaattaatcatttaaatttcagtatcctataattttaagctttcttgctttatgtcagctcgcacttgcaagatgctttccatggggtgatggtaatatcaaggggggtatggatgatggtactttcaggactactgtacttgagtggagaaatacatgtttgttggctgcaaatggtgcaaaattctcataccaacgagctttgcatctcactccctgggaagctaatattcacaatgacactgctatatgtcttgatctcatttataccattgaggagaataatagtctagatcccataacttggtaagtcttttattccacattaatagcttagtagcatgtggcatctgttcttaacaagcgtacatgataaaattttatttctgtgtacaacagggaactgccagagaaaatgtcgttgggtgggttgatactggaaccagtcaataaggatttttgggttacattgggctcggtgtcaagtaatcaagctttaaaacagcattcttttatcagagcactgcatcttgatatgtctctctctgaagcttgggcataccttggaaaggtagtactccccccggacacaaaaacatgtcgttttagtcattgacatgaatacatctttggctgctaattttggttgcgaaacatttgacaaaccccccaaaatatataatattgtgaaattacttttcgaggtaaatctacacacatgattttcacacatggaatacaaatattaaaaataatgtttaaagtttttttaagtttaacttaaaaaaaaatccaaaatgacatgtttccataaccggtgttagtactatttatgcggcagctgactgttcttctattaattgagaggtaagtgatagttcgaccttcagatttacaggcattcaggtgataagcagttggcaagacaagcatttgatcgagctcgaagcattgatccttcactggccttgccatgggcaggaatgtcagctgaaaattaccaccagcctgggtatttctcccatagaatttcatagaagatttcatatattgttacagataatttcttattaagctgattatacgctttggcatgatcttcaagggatgggccagtaaatgaatgttttgaaagctgcttgcgggctgtgcagatacttcctgtaagatagttcatttgtatcatacttgttgtcagtataacattaatgatttggttagtttttctccttcaagtttgttttgatttcattatagcgatgtttttgtattagcttccagagttccagattggtcttggaacaattgctgctcgttctggtgaacttctatcacctcaggtatgctttcaaactcccccctcccctgcaaaaaagaacaaaaacattttaaaaaaagaaggtacttcatggttgaaataagtcctttctttcccgcagcggtgtgctttagtggcaattatcacatgctctattatcattaatgttctaattgctgatgctaaatgctactgttatggtcccagaccacaatagctacatattgcttcattatggtgtcatgtatgcgaagtgttactagctgtccgtgcattgtctgctactttagattgctcagtttttttggatattttagagtaccagactacatggttgacacttgtttcctgttcttttccctgtaacacataatccccttatacttagtcctattatttaggtattgatggctgtaaggcaagctgttcaacgggcacctcattaccctgagtcgcacaacataaatggcttggtttctgaagtgcgatcagacttccaatctgcaattgcatcgtaccgacaagcaaaatttgctttagatatgatgcgcaactccaaaacagactgcagatgtcatattgctgatatttccgtgaatcttgcccggtcactatgtaaggtaagagtattatcatccgctttgatgacaacaaaaaaaaatccatatcaggcagctgaaagatcatgttacttcaaatgttttatgcgcaataagtttgcattttctgtcacattatttacaaatgtttatggaacagttatcctttaaccgttgctttgactgtagactggtcttgcaactgaggcagtgcgggagtgcgaagaattgaaaagacaaggttttttttttatttcatgtagcaatggaaggatctttttttcctattttctcctgaattgccatgcatggcaaataaattcctttaagttattttcttatgctatccaacacacaggctaacaagttatctcaaatttctaggatttctgaatgatgacggattgcagatatatgctctttcattatggaaacttggtcggcatgatgaagctctttcagtatcaagaaacttggctgaaaacttatcgagtatgaagcaggagagtgcaactgcagctttaggattcatatgcacgttgacatacaacatctctgggaaggactctgcagctgcggtcattcataaactgcctggtcaactcaattacagcacacagctgaaatttattatctctgcattagatgctttacagccaaacaagcgttttcagttaccccagctgagtatgcctcctaggcttacatcgtatgaagtcatgagtgaagtccactcaaatattgctcttggaaatgctgtaagtatggttttctaaaattcttggcattctatgtgaaaaaatgcttcttttgggaatgtgctagagcataaatgtgctgatatagattaaaaataatccttgtagattggtggggaatcagacaagtttttaagggttgatggtggcctgtcttacctgaaaaaggttctacacatgtatcccgactgcagtttagtaaggtaatgatcttgcatgcactggtaatatctaggttctagacttgtggcttcaatcgaaatgttgtgcactatatttccttcgttgcatgctgtagaaaccaacttggatctctgctactgtcaagtgaagattggatggcttctcataaagcagtaagggttacttcattgtcccggggatatacatccaataggggcttaagatctccacaccaaattcaagcatgtgcagcagtttcttgctatgctacctgcacttcttacccaaagttctcttttccaacatgtgaagatcaatacctaagcggatacaatgcaatatgccgcctgcaaaggtacatcttctcttactatatttaccatgtatctaatattcttgtgtgtgacttgaccttaagcttgcggtttgactgtaacaatcttgcacatattttccaaagaacaatctatccaactaaacaagctcttatgcttattcccacaggagatgtaacaaccattcatgctttgtatttctaaaccttccattaataaataaaatggcatgagtcttaaaaaagaactaagtgtgtgactttctttgcaggtgggttcatctagaaccgtggaaccaagatgcacgtcgcctccttgtacttacccttttccaaaaagcacgtgaagaaaagtatccgaaacatatctgcaccattttgaagaggctgattttgcaagttctctccagtggtagcaattcacaagacaataaggtggttcagtatgggaactacttgttacttcttgtggcttcagaggttagtttgcaatctggtgaccatggcaactgtattgctcaagctactgaagctcttggagtaacttcttcgagcgtggattctttctttgcacacttgcaactgtgtcgggcctatgtgatgcaaggcaatcttttgaactctaggagtgagtacatgaaatgcctgcaaaaccgtacagatactgaaattggctgggtaatacttaagcaacttgcatctatatgttcactggagggtacccctgatgaaatagagatacatctcggaggatgcgttgaaaggaaaggtagcaatgcatccaaatggatgtctcttttttatctagcatgcgctcagtgttcagtatggaatgaggactttgcaagtgctgaaaaagctattgctcaggcatgtgctgaaggggatcctgacagctgtgtcttatttctcaacggtaattggcatgctacttatttactataatgactaactaaattgggatgttttattgttatttttcttagtagtttactctacactagcccggaataaattctaactaacaatcttgatgtttatttttgacaatgtgctgactgaaacattacccttgtaggcgcaatttgtatggacattgcttggaggttcgcggcccctcaatttatagcccgtgcagcttccagcctcagaaaggcacagcagaaatcacttgcttctttacctattgtgtccctcttactggcccaagcagaaggcagccttggctccaaagccaagtgggagaaaaaccttcgtctagagtggttctcatggcccccaggtctgagcatggcttcatacaaagcacactgttcttgaaatttcaccatttaatttacctttttccgattcgtcgtgcagaattgaggcctgctgagctctatttccagatgcatcttctggcaacgcagtcaagtgcagcaacttcccagcagaaccagctagtggaaaccatgcaaaccccagagaagtggcttctcagggcgatacacctgaacccgtcgtgctctaggtactggacggctctgatgcaactcgtgtacgtgtaacccttcgaaattggaagcactgatctttggtgaaaccaaccacaatgtagcgcatttcttgactcagctgtaagcatatggattggctggatgaactgccgacctgtctgtgataagtgaaaaacctgcatatgcttgcttaccgtgttgagggctgagacgtgagatgtttccgg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071834.1 RefSeq:Os10g0548200]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 10]]
| |
| − | [[Category:Chromosome 10]]
| |
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Annotated Information
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Structured Information
