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| | ===Cellular_component=== | | ===Cellular_component=== |
| − | transporter activity:transporter activity
| + | The map-based sequence of the rice genome. |
| | + | International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779 |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
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| | 4.The map-based sequence of the rice genome. | | 4.The map-based sequence of the rice genome. |
| − | International Rice Genome Sequencing Project. Nature, 2005 Aug 11 | + | International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779 |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| |
| − | GeneName = Os09g0381100|
| |
| − | Description = Xanthine/uracil/vitamin C permease family protein|
| |
| − | Version = NM_001069593.1 GI:115478928 GeneID:4346932|
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| − | Length = 4454 bp|
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| − | Definition = Oryza sativa Japonica Group Os09g0381100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
| |
| − | AP = Chromosome 9:13488782..13493235|
| |
| − | CDS = 13489582..13489684,13490223..13490320,13490481..13490657,13490769..13490869,13490965..13491040<br>,13491127..13491186,13491272..13491456,13491540..13491636,13491741..13491827<br>,13491915..13491973,13492079..13492170,13492283..13492360,13492462..13492622<br>,13492729..13492947|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008402:13488782..13493235
| |
| − | source=RiceChromosome09
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| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008402:13488782..13493235
| |
| − | source=RiceChromosome09
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggccgccgcgccgccgcccaaggccgacgagctgcagccgcacccgcccaaggaacagctcgccagcgtgtccttctgcatcaccagccctccgccatggcccgaggccattatattaggattccagcatttcattgttatgctgggcaccactgtcatcataccgagtgcacttgtacctcagatgggaggaggaaatgatgaaaaagctcgggtaattcagacgctgttgtttgttgccggaataaacaccttgttccaaacattcttcgggtctcgtctccccgttgtgatgggtggctcatacactttcgtcgcaccaaccatctcgatcattctggctggacgttacaacaatgaagcagaccctcgtgagaaattcttacggaccatgaggggaacacaaggtgctctcatcatcgcgtcgacgattcagatgatacttggtttcagtggtctctggcgcaatgttgttaggttgttgagtccattgtctgcggttcctcttatttcacttgttggatttgggctttatgagcttggttttccaggggtagctaagtgtgtggaaattggtcttccagaactcatcctacttgttgcattttctcagtatttgcctcaagtgttacattttgggaagcctatctttggccggtttggtgttcttttcaccgtttcgatagtgtggctttacgcgtacattctcacaattagcggtgcttacaagaatgctccaccaaagacacaggtgcattgccgtgttgatcgctcaggccttatttcaggagctccttggattagagttccttatccctttcagtggggagctccaacttttgatgctggtgaagcctttgcaatgatgatgacttcatttattgctcttgtggagacaactggagctttcattgctgcttcaaggtatgcaagcgcaactatgatacctccatcaatcattagtcggggcatcggttggcagggaatcagcatcttgattgattctttttttgggacggccaatggaacctcagtttcagtggagaatgttggtttactcgctttgacacatgttggcagcaggagagtagtgcaaatatctgctggtttcatgatcttctttgctatccttggaaaatttggagcacttttcgcatccattccattgcctatatttgcgggcatgtactgtattttcttcgcttatgtcggtgcctgtggtttgagtttccttcagttttgcaacctaaacagcttcaggaccaaattcatcttgggttttgctttcttcatggggatctcagttcctcagtacttcaatgagtacacagctgttgcaggttatggaccagtgcacactggtgccagatggttcaatgatatgataaacgtgccgttctcgtcgaagccgtttgtcgcgggtcttgtggcctacttcctcgacaacacgatcgagacgcacaataacacggtgaggaaggatagaggctaccattggtgggacaaattcaggagcttcaagaaagacgcgaggagcgaagaattctactcgttaccgttcaatctgaacaagttcttccctgctgtctga</cdnaseq>|
| |
| − | AA = <aaseq>MAAAPPPKADELQPHPPKEQLASVSFCITSPPPWPEAIILGFQH FIVMLGTTVIIPSALVPQMGGGNDEKARVIQTLLFVAGINTLFQTFFGSRLPVVMGGS YTFVAPTISIILAGRYNNEADPREKFLRTMRGTQGALIIASTIQMILGFSGLWRNVVR LLSPLSAVPLISLVGFGLYELGFPGVAKCVEIGLPELILLVAFSQYLPQVLHFGKPIF GRFGVLFTVSIVWLYAYILTISGAYKNAPPKTQVHCRVDRSGLISGAPWIRVPYPFQW GAPTFDAGEAFAMMMTSFIALVETTGAFIAASRYASATMIPPSIISRGIGWQGISILI DSFFGTANGTSVSVENVGLLALTHVGSRRVVQISAGFMIFFAILGKFGALFASIPLPI FAGMYCIFFAYVGACGLSFLQFCNLNSFRTKFILGFAFFMGISVPQYFNEYTAVAGYG PVHTGARWFNDMINVPFSSKPFVAGLVAYFLDNTIETHNNTVRKDRGYHWWDKFRSFK KDARSEEFYSLPFNLNKFFPAV</aaseq>|
| |
| − | DNA = <dnaseqindica>801..903#1442..1539#1700..1876#1988..2088#2184..2259#2346..2405#2491..2675#2759..2855#2960..3046#3134..3192#3298..3389#3502..3579#3681..3841#3948..4166#agtcgcgtctgcatacaggtcatccatctctctcactctgcctcgccgggaagcagcagcgagcgaagtagtaggcgagagaatccgagcgaggaagaaagcccgagccgaggagcgctttaaagcgggaagaagaaagaaagcgcgcgagtaaagaaaagggaggaggaggaggaaagagagccgtcgttttcgttctcctctgcttcgcctcggccacgctgcggccacctcctttctgccacggcaaaagcctcctcgggatgctccactgatcgtcttctacttactcctctttcttccagcttggccggcgtgtggctgattattccagaatttccattagcttaatcaccggatcaagaagaatgagagaaaggggggagaggctcttttctgtgggatgacagattccgttttgtaggagcagcgcaccatttcagatttcttcctcctcctcttcttctttccgttgtgcttgctgcttttctctactaccttttccactgttgcgaagtcgggttggtgggtggttgattgattgttctttccttcctcgtgagggttcttgcttcttggcttcttggccgcttcttgagttggggctagctggttcttttgctgtctctgtcccgtcaaactgaagcgagcgagagattgaccgggtgggtgattcttcttcgaggagcttcttcttggagctcgtgagagtggagtgatcgaggtggtggtgtgagagcagtagacaggtttttcttggggagcttggaggtagccggagttgggggaggaggaggaggatggccgccgcgccgccgcccaaggccgacgagctgcagccgcacccgcccaaggaacagctcgccagcgtgtccttctgcatcaccagccctccgccatggcgtacgtgcgctctgcttctctacttcacttcagggtttcttaatttttctgatctcgagttctcgattgctgcttaaagtgttctttgtgatttgtcctttcgtgttgttttttgtccatgcttttgtttggttgatgcttgagtttttcatcggtggatacgtgtggtgatcatctgtttatgtgaaagtggaatgttttagtactgaacttttggcctacttttggtttgatgctgatgcttttgcgtataaaattgtgtattagtttgtacgacatgcttttgttcttcttttctctcgttagttctagtattttcttactttgctcagctgaggaaaaggagacttttgattaactagtctataaagattaagttcaccttttaaagttttaatccatcataaaaagggttttgaattgcaaattctttatgcagttgcctagcagtaaactgtgtgtatgttcagttcagagatgtgttcaagtatatatgctattttttttctctgaacttgttatcttatcttatatgcagccgaggccattatattaggattccagcatttcattgttatgctgggcaccactgtcatcataccgagtgcacttgtacctcagatgggaggaggaaatgtgagtcccaaaacttatgtgttacagtacatctcttagttctattcacttgcttgacaattgatttcagtactactgaagatttatcagtgttaatttacacaaaaaaaaattgaacctctacatgctgaatatctgaataattgcttctttatatcaggatgaaaaagctcgggtaattcagacgctgttgtttgttgccggaataaacaccttgttccaaacattcttcgggtctcgtctccccgttgtgatgggtggctcatacactttcgtcgcaccaaccatctcgatcattctggctggacgttacaacaatgaagcagaccctcgtgaggtagtgcccagtggttttggtcttcggattagcggtgtctctgtctatttatgacatttttttttgtgggggggtgaaagctaacatttttctgctgttgttgttgtaaagaaattcttacggaccatgaggggaacacaaggtgctctcatcatcgcgtcgacgattcagatgatacttggtttcagtggtctctggcgcaatgttgttaggttggtatggttttggtctttatttgattgaagctagagctgtgtcgtgtagagttttgatttttgcaattaactgtcctgtattatttttgcaggttgttgagtccattgtctgcggttcctcttatttcacttgttggatttgggctttatgagcttggttttccaggggttagtagttctgctccttctatttttttatgtttttaaatcctgaatataccttcatgtttttttttttggaaaaatggatgcaggtagctaagtgtgtggaaattggtcttccagaactcatcctacttgttgcattttctcaggtattaatgttactttactactctctgcatagtcagagcaatagtaacatattttacatactgatcatgtttgtattcttgatagtatttgcctcaagtgttacattttgggaagcctatctttggccggtttggtgttcttttcaccgtttcgatagtgtggctttacgcgtacattctcacaattagcggtgcttacaagaatgctccaccaaagacacaggtgcattgccgtgttgatcgctcaggccttatttcaggagctccttggtaggattctagaataaccatagtattattccgtgcttttatttcgatggaaatccttacaaggtgttgattttttattgtaggattagagttccttatccctttcagtggggagctccaacttttgatgctggtgaagcctttgcaatgatgatgacttcatttattgctcttgtggaggttggtctgcagtacttaatcaagaatagaaagaaaaggctatgctagcatgcattctaagctatccatttagaagtaataatatgataaaattttgcctgtagacaactggagctttcattgctgcttcaaggtatgcaagcgcaactatgatacctccatcaatcattagtcggggcatcggttggcaggtaagtgaatcaattgtgccttttgtaccatagaatttgtcccatcttcaatttgttacattgattatcctaaaacattatcttcagggaatcagcatcttgattgattctttttttgggacggccaatggaacctcagtttcagtgtaagtatagcgttagtggataattagaaccgtcaatccttgattgctcagatagttcctttttttccctttttctaactgggagtgtgaatttggtattcacagggagaatgttggtttactcgctttgacacatgttggcagcaggagagtagtgcaaatatctgctggtttcatgatcttctttgctatccttggtaattctgctcatgtccttatagctatcttaacatattttttttgttgtgtagaagtcattttctctgccacacttggctaggctaattataaattattttgatgaaccaggaaaatttggagcacttttcgcatccattccattgcctatatttgcgggcatgtactgtattttcttcgcttatgtcggtaggttgagatgcctgaatcaaataaacatcagttccttcatctgataattctcaacatattattccgctgtaatgattcactgttccttccatgcgcaggtgcctgtggtttgagtttccttcagttttgcaacctaaacagcttcaggaccaaattcatcttgggttttgctttcttcatggggatctcagttcctcagtacttcaatgagtacacagctgttgcaggttatggaccagtgcacactggtgccagatgggtatgagaaatactacatcctacagaatcctcctttttttttcttcatagcttgttctttgttctgatcacttgatgataatctttgctctctctttttttttcagttcaatgatatgataaacgtgccgttctcgtcgaagccgtttgtcgcgggtcttgtggcctacttcctcgacaacacgatcgagacgcacaataacacggtgaggaaggatagaggctaccattggtgggacaaattcaggagcttcaagaaagacgcgaggagcgaagaattctactcgttaccgttcaatctgaacaagttcttccctgctgtctgaatgatctagcaaatgtcacccaagcaaaaatggttcatgtctgaacataattctgctggccttcttcagtgttgctgtgcgtcagttttgtgtacttataataggcgaatcttactaattggacaacggagatgtgccttagaatgggaatatcatgtctatttttttgtcctacaatgatttatgtgtcattacctaggtctttctcttatcaagttgtcaatgacccaatgtacatgtggcttttctatcggatagtattagtatcacatttaacaatatgacctg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069593.1 RefSeq:Os09g0381100]|
| |
| − | }}
| |
| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
Please input one-sentence summary here.
Annotated Information
Biological_process
transmembrane transport:Transmembrane transport requires transport of a solute across a lipid bilayer. Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane and is not traversed. For transport through the nuclear pore, consider instead the term 'nucleocytoplasmic transport ; GO:0006913' and its children. Note also that this term is not intended for use in annotating lateral movement within membranes.
Cellular_component
membrane:Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
plasmodesma;A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
Cellular_component
The map-based sequence of the rice genome.
International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779
Labs working on this gene
Please input related labs here.
References
1.The Rice Annotation Project Database (RAP-DB): 2008 update.
Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. PMID 18089549
2.Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
Rice Annotation Project, et al. Genome Res, 2007 Feb. PMID 17210932
3.The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381971
4.The map-based sequence of the rice genome.
International Rice Genome Sequencing Project. Nature, 2005 Aug 11. PMID 16100779
Structured Information
