Difference between revisions of "Main Page"

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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Genome Overview</div>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
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<div style="width:510px;padding:0.5em 0.5em;font-size:115%;">
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== ==
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* '''RiceWiki-OKP4R''' is aimed at providing users a multidisciplinary repository to share comprehensive curation of published omics knowledge for rice. [[Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br><br>
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<slideshow sequence="random" transition="fade" refresh="2000">
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====[[:Category:Japonica Genes | ''Oryza sativa Japonica'' Group]]====
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<div>[[Image:IC4R-Epigenomic-overview-2.png|center|490px|thumb|[[Epigenomic_Studies_in_Rice|'''''Epigenomics''''']] '''''(image from Clícia Grativol et al., 2012)'''''|link=Epigenomic_Studies_in_Rice]]</div>
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'''Chromosome'''
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<div>[[Image:IC4R-GWAS-overview-2.png|center|490px|thumb|[[Genome-Wide_Association_Studies_in_Rice|'''''GWAS''''']] '''''(image from Takehiko Ogura et al.,2015)'''''|link=Genome-Wide_Association_Studies_in_Rice]]</div>
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[[:category:Japonica Chromosome 1|'''1''']].
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<div>[[Image:IC4R-Omics-Overview-1.png|center|490px|thumb|'''''[[Omics_Knowledge_Portal_for_Rice|Omics]] (image from Jeongsik Kim et al.,2016)'''''|link=Omics_Knowledge_Portal_for_Rice]]</div>
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[[:category:Japonica Chromosome 2|'''2''']].
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<div>[[Image:IC4R007-Proteomic-2010-19853963-2.png|center|thumb|490px|'''''[[Proteomic_Studies_in_Rice|Proteomics]] (image from Kyunghee Lee et al.,2010)'''''|link=Proteomic_Studies_in_Rice]]</div>
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[[:category:Japonica Chromosome 3|'''3''']].
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<div>[[Image:IC4R001-Microarray-2011-221106719-3.png|center|490px|thumb|'''''[[Microarray_Related_Studies_in_Rice|Transcriptomics]] (image from Takayuki Ohnishi et al.,2011)'''''|link=Microarray_Related_Studies_in_Rice]]</div>
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[[:category:Japonica Chromosome 4|'''4''']].
 
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[[:category:Japonica Chromosome 5|'''5''']].
 
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[[:category:Japonica Chromosome 6|'''6''']].
 
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[[:category:Japonica Chromosome 7|'''7''']].
 
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[[:category:Japonica Chromosome 8|'''8''']].
 
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[[:category:Japonica Chromosome 9|'''9''']].
 
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[[:category:Japonica Chromosome 10|'''10''']].
 
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[[:category:Japonica Chromosome 11|'''11''']].
 
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[[:category:Japonica Chromosome 12|'''12''']].
 
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[[:category:Japonica_Mitochondrion|'''Mt''']].
 
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[[:category:Japonica_Plastid|'''Pd''']]
 
  
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====[[:Category:Indica Genes | ''Oryza sativa Indica'' Group]]====
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</slideshow>
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'''Chromosome'''
 
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[[:category:Indica Chromosome 1|'''1''']].
 
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[[:category:Indica Chromosome 2|'''2''']].
 
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[[:category:Indica Chromosome 3|'''3''']].
 
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[[:category:Indica Chromosome 4|'''4''']].
 
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[[:category:Indica Chromosome 5|'''5''']].
 
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[[:category:Indica Chromosome 6|'''6''']].
 
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[[:category:Indica Chromosome 7|'''7''']].
 
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[[:category:Indica Chromosome 8|'''8''']].
 
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[[:category:Indica Chromosome 9|'''9''']].
 
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[[:category:Indica Chromosome 10|'''10''']].
 
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[[:category:Indica Chromosome 11|'''11''']].
 
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[[:category:Indica Chromosome 12|'''12''']]
 
 
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<!-----------------Rice---------------------->
 
<!-----------------Rice---------------------->
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Story</div>
 
<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Story</div>
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<div style="padding:0.5em 0.5em;font-size:110%;">
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<div style="padding:0.5em 0.5em;font-size:120%;">
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[[File:Damifan.jpg|right|120px|margin: 5px|]]
 
 
*As an important food
 
*As an important food
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
*As a biological model
 
*As a biological model
 
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
 
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
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<div style="padding:0.5em 0.5em;font-size:110%;">
 
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[[File:IC4R_Omics_Pic_Jian.png|right|bottom|frameless|274px|text-top|link=Omics_Knowledge_Portal_for_Rice|]]
 
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*Omics is a discipline of science and engineering for large-scale analysis of the functions and interactions of biological information, including [[Genome Sequencing Studies in Rice|'''Genomics''']], [[Epigenomic Studies in Rice|'''Epigenomics''']], [[MRNA-Seq_Related_Studies_in_Rice|'''Transcriptomics''']], [[Proteomic Studies in Rice|'''Proteomics''']], [[Metabolomics|'''Metabolomics''']], Lipidomics, Interactomics and [[Phenomics|'''Phenomics''']].
 
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* In order to make a comprehensive integration of published omics knowledge for rice, in 2016, we establish [[Omics Knowledge Portal for Rice|'''Omics Knowledge Portal for Rice (OKP4R)''']] in RiceWiki. [[Omics Knowledge Portal for Rice|'''(More...)''']]
 
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Revision as of 12:26, 29 June 2016

__NOTITLE__


Welcome to RiceWiki
86,216 rice genes inside
Contribute your efforts, further our knowledge.
Introduction
RiceWiki, a project of IC4R (Information Commmons for Rice) as well as a component of ScienceWikis, is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice, viz., a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence to collect, edit and annotate information about rice, quantifies users' contributions in each annotated gene and provides explicit authorship for each contributor to encourage more participation from the whole scientific community. Welcome to join us !
Nothing great is ever accomplished in isolation. – Yo-Yo Ma
  • Literature: 35717 rice-related publications associated with rice genes
  • Transcriptome: gene expression profiles at 22 developmental stages and tissue types based on RNA-Seq
  • Variations: SNPs and INDELs (under collection)
Featured Research

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Latest News
Omics Knowledge Portal for Rice (OKP4R)
  • RiceWiki-OKP4R is aimed at providing users a multidisciplinary repository to share comprehensive curation of published omics knowledge for rice. (More...)

Epigenomics (image from Clícia Grativol et al., 2012)
GWAS (image from Takehiko Ogura et al.,2015)
Omics (image from Jeongsik Kim et al.,2016)
Proteomics (image from Kyunghee Lee et al.,2010)
Transcriptomics (image from Takayuki Ohnishi et al.,2011)
Rice Story
  • As an important food
Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 (Full article...).
  • As a biological model
Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, indica and japonica, were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.
Publications

Primary publication:

  • RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research (2014), 42(Database issue):D1222-1228. PMID=24136999

Related publications:

  • Information Commons for Rice (IC4R). Nucleic Acids Research (2016), 44(D1):D1172-1180. PMID=26519466
  • Bringing biocuration to China. Genomics Proteomics Bioinformatics (2014), 12(4):153-155.PMID=25042682
  • AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics (2013), 29(14):1837-1839.PMID=23732274]
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