Difference between revisions of "IC4R008-GWAS-2016-27228161"

Revision as of 05:54, 21 July 2016

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

In this study the researchers carried out a genome-wide association analysis for plant and grain morphology and root architecture in a unique panel of temperate rice accessions adapted to European pedo-climatic conditions. This is the first study to assess the association of selected phenotypic traits to specific genomic regions in the narrow genetic pool of temperate japonica. A set of 391 rice accessions were GBS-genotyped yielding—after data editing—57000 polymorphic and informative SNPS, among which 54% were in genic regions.

PTP Science Park, 26900 Lodi, Italy
IBBA-CNR, Lodi, Italy
CREA-Council for Agricultural Research and Economics, Rice Research Unit, 13100 Vercelli, Italy
CREA-Council for Agricultural Research and Economics, Genomics Research Centre, 29017 Fiorenzuola d’Arda (Piacenza), Italy, 5 Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY, United States of America

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 ==The Background of This Project==
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+* In this study the researchers carried out a genome-wide association analysis for plant and grain morphology and root architecture in a unique panel of temperate rice accessions adapted to European pedo-climatic conditions. This is the first study to assess the association of selected phenotypic traits to specific genomic regions in the narrow genetic pool of temperate japonica. A set of 391 rice accessions were GBS-genotyped yielding—after data editing—57000 polymorphic and informative SNPS, among which 54% were in genic regions.
 ==Plant Culture & Treatment==