Difference between revisions of "Os03g0563300"

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(Created page with "{{JaponicaGene| GeneName = Os03g0563300| Description = Similar to Mg-chelatase subunit (Fragment)| Version = NM_001057028.1 GI:115453784 GeneID:4333259| Length = 2301 bp| ...")
 
 
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{{JaponicaGene|
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The rice gene Os03g0563300 was reported as '''''Ch19''''' in 2006<ref name="ref1" />.
GeneName = Os03g0563300|
 
Description = Similar to Mg-chelatase subunit (Fragment)|
 
Version = NM_001057028.1 GI:115453784 GeneID:4333259|
 
Length = 2301 bp|
 
Definition = Oryza sativa Japonica Group Os03g0563300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* '''''Chl9''''' genes encode the OsChlI subunits of Mg-chelatase that play an important role in chloroplast development as a modulator of MgProto<ref name="ref1" />.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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* The chlorophyll synthesis in developing chloroplasts may be coordinated primarily by the levels of Mg-chelatase activity, and whose mutation causes the alteration of leaf color from green to yellowish-green or albino<ref name="ref1" />.
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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AP = Chromosome 3:21007827..21010127|
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* '''''chl9''''' mutations negatively affect the formation of thylakoid membranes during chloroplast development, meaning that Mg-chelatase activity is closely associated with the development of chloroplast components<ref name="ref1" />.
CDS = 21008653..21009708,21009790..21009869,21009983..21010094|
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GCID = <gbrowseImage1>
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===Mutation===
name=NC_008396:21007827..21010127
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* '''''chl9''''' mutants exhibit a yellowish-green leaf phenotype under normal growth conditions (Fig. 1B). Abnormal leaf color is first observed on the leaves of 2- to 3-week-old seedlings. And the '''''chl9''''' mutant exhibits its distinctive phenotype throughout development. In addition, the '''''chl9''''' mutants are viable. To characterize the chlorina phenotypes of '''''chl9''''' mutants, the researchers first measured their total chlorophyll contents, and found them to be approximately 34% of wild-type Chl levels (Fig. 1D), indicating that the chlorina phenotype results from reduced chlorophyll levels. Underdeveloped thylakoid membranes, poor granum structures and non-dispersed prolamellar bodies were observed in the chloroplasts of '''''chl9''''' mutant leaves (Fig. 2C, F)<ref name="ref1" />.
source=RiceChromosome03
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preset=GeneLocation
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[[File:Os03g0563300-1.png|center|thumb|400px|'''Fig. 1 Characterization of the '''''chl9''''' mutants.''' '' <ref name="ref1" />.'']]
</gbrowseImage1>|
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[[File:Os03g0563300-2.png|center|thumb|400px|'''Fig. 2 Electron microscopic analysis of wild-type and '''''chl9''''' mutants.''' '' <ref name="ref1" />.'']]
GSID = <gbrowseImage2>
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name=NC_008396:21007827..21010127
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* The MgProto(ME) content of '''''chl9''''' leaves was lower than 31% of its wild-type indica cultivar, IR36 (Fig. 3). These results verify that the missense mutations in ChlI of '''''chl9''''' result in the reduction of Mg-chelatase activity and thereby cause decreased chlorophyll accumulation in '''''chl9''''' mutant leaves<ref name="ref1" />.
source=RiceChromosome03
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preset=GeneLocation
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[[File:Os03g0563300-3.png|center|thumb|400px|'''Fig. 2 Electron microscopic analysis of wild-type and chl9 mutants.''' '' <ref name="ref1" />.'']]
</gbrowseImage2>|
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CDNA = <cdnaseq>atggcttccgccttctcccccgccaccgccgcgcccgccgcgtcgccggccctcttctccgcctccacctcccggcctctctccctcaccgccgccgccgctgccgtctcagcccgtatcccgtcacggagagggttccgccgcggccgcttcaccgtctgcaatgtagccgccccctccgccacccagcaggaggctaaggcggcgggcgcgaaggagagccaacggccggtgtatccgttcgcggcgatcgtggggcaggacgagatgaagctgtgcctgctgctcaacgtcatcgaccctaagatcggcggtgtcatgatcatgggagaccgtggcaccggcaaatccaccaccgtccgctcgctcgtcgacctgctcccggatatccgcgtcgttgttggcgaccctttcaattccgaccctgacgatcccgaggtcatgggccctgaggtccgggaacgcgtgctggagggtgagaagcttcctgttgtcacggccaagatcaccatggtagatcttccccttggtgccactgaggatagagtctgtggcaccattgatattgagaaggcgctcaccgatggtgtcaaggcgttcgagcctggtttgcttgccaaggccaacagggggattctttatgtggatgaggtcaatttgttggatgaccatctagtagatgtgcttctggattctgctgcgtcaggatggaacaccgtggagagagagggtatctccatctcccaccctgctcggttcatcctcattgggtctggtaaccccgaggaaggggagctccggccacagctgcttgaccggtttggcatgcacgcgcaggttggtactgtcagggatgctgaactcagggtgaaaattgttgaagagagagctcggttcgacagggatccaaaggcgttccgtgagtcctacttggaggaacaagacaagctccagcagcagatttcatctgctcggagtaaccttggtgctgtgcagattgaccatgatcttcgtgttaagatttctaaagtgtgtgcagagttgaatgttgatggattaagaggggacattgtgactaacagggctgccaaggcgttggcagcactcaaaggcagggacactgtcactgtagaggacattgccactgttatccccaactgcttgaggcatcggcttcggaaggacccacttgaatcaattgactcaggattgctcgtggttgagaagttttatgaagtcttcacctaa</cdnaseq>|
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AA = <aaseq>MASAFSPATAAPAASPALFSASTSRPLSLTAAAAAVSARIPSRR                    GFRRGRFTVCNVAAPSATQQEAKAAGAKESQRPVYPFAAIVGQDEMKLCLLLNVIDPK                    IGGVMIMGDRGTGKSTTVRSLVDLLPDIRVVVGDPFNSDPDDPEVMGPEVRERVLEGE                    KLPVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGILYVDEV                    NLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGM                    HAQVGTVRDAELRVKIVEERARFDRDPKAFRESYLEEQDKLQQQISSARSNLGAVQID                    HDLRVKISKVCAELNVDGLRGDIVTNRAAKALAALKGRDTVTVEDIATVIPNCLRHRL                    RKDPLESIDSGLLVVEKFYEVFT</aaseq>|
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DNA = <dnaseqindica>420..1475#259..338#34..145#tttcccctctccccacctccgcgtctcctcaccatggcttccgccttctcccccgccaccgccgcgcccgccgcgtcgccggccctcttctccgcctccacctcccggcctctctccctcaccgccgccgccgctgccgtctcaggtaacatctcctctccctctccgcttttccgtttccaaaagcaccgcattcgaatcccccaagccaggaccttggcaatttacttacactcgagagtggtttctgctgcgcagcccgtatcccgtcacggagagggttccgccgcggccgcttcaccgtctgcaatgtagccgccccctccgccacccagcaggtaaccccacgccctcaaatcccttcgagacttgggtggattgtttcgctcatgtccagcatcttggtgaaatgcgcgtaggaggctaaggcggcgggcgcgaaggagagccaacggccggtgtatccgttcgcggcgatcgtggggcaggacgagatgaagctgtgcctgctgctcaacgtcatcgaccctaagatcggcggtgtcatgatcatgggagaccgtggcaccggcaaatccaccaccgtccgctcgctcgtcgacctgctcccggatatccgcgtcgttgttggcgaccctttcaattccgaccctgacgatcccgaggtcatgggccctgaggtccgggaacgcgtgctggagggtgagaagcttcctgttgtcacggccaagatcaccatggtagatcttccccttggtgccactgaggatagagtctgtggcaccattgatattgagaaggcgctcaccgatggtgtcaaggcgttcgagcctggtttgcttgccaaggccaacagggggattctttatgtggatgaggtcaatttgttggatgaccatctagtagatgtgcttctggattctgctgcgtcaggatggaacaccgtggagagagagggtatctccatctcccaccctgctcggttcatcctcattgggtctggtaaccccgaggaaggggagctccggccacagctgcttgaccggtttggcatgcacgcgcaggttggtactgtcagggatgctgaactcagggtgaaaattgttgaagagagagctcggttcgacagggatccaaaggcgttccgtgagtcctacttggaggaacaagacaagctccagcagcagatttcatctgctcggagtaaccttggtgctgtgcagattgaccatgatcttcgtgttaagatttctaaagtgtgtgcagagttgaatgttgatggattaagaggggacattgtgactaacagggctgccaaggcgttggcagcactcaaaggcagggacactgtcactgtagaggacattgccactgttatccccaactgcttgaggcatcggcttcggaaggacccacttgaatcaattgactcaggattgctcgtggttgagaagttttatgaagtcttcacctaaattattctggaggtaaatggttttctatcagaaagttcggcaggagggcttttgtttgagtttaatgacattgtttcagaggcttgaacttgatgtctatttgtacatctatcattagtatagattttattccccttcaatcgaaatgcctgctatgagttgcagacggttcgtacatttgaatcttccttgtagtcattgatgcagccaatgattaggaaaggagcatctaagtcaagctaacatcttatatttctttttgaaaaaaaaaaagaatcttgcagcatatatgaacaatctttgaactagtgtccagagataatgtcatgccataaatattctgctgcttttgtcatttctcctagatgaaaggtcctaaaaatagaaaatacaatgctagaaatcttgaatggatcttttgcccaagtaagcttcaatagtaattatctgttggtattttagggaattacattctgtgctactagaagttttcatcatcatttttactcactgtttcaatgaaacaatgtacaatggaggtcctggactcacttgtcattgggtcaatgaggagttttgcaatttcttagtggcatataataagaatagctgaatgcccaggtgttgtgattgaatagaaaaatgaattgaatgtcactttaactatgtgcttacatgtttttaatattggtaaaacattaaacacgtcttgtgcaaacataagggtataagataaagggtgcatcagtccatgggagcatattttcctttttcttgtacatattttctttgtacaaaaatacatgacaacgaaatgttattctcc</dnaseqindica>|
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==Labs working on this gene==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057028.1 RefSeq:Os03g0563300]|
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* Department of Plant Science, Seoul National University Seoul 151-921, Republic of Korea
}}
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[[Category:Genes]]
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==References==
[[Category:Japonica mRNA]]
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<references>
[[Category:Oryza Sativa Japonica Group]]
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* <ref name="ref1">
[[Category:Japonica Genes]]
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Zhang H, Li J, Yoo JH, Yoo SC, Cho SH, Koh HJ, Seo HS, Paek NC. Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development. Plant Mol Biol. 2006 Oct;62(3):325-37. Epub 2006 Aug 17. PubMed PMID: 16915519.
[[Category:Japonica Chromosome 3]]
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[[Category:Chromosome 3]]
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 +
</references>
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==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 10:50, 5 August 2016

The rice gene Os03g0563300 was reported as Ch19 in 2006[1].

Annotated Information

Function

  • Chl9 genes encode the OsChlI subunits of Mg-chelatase that play an important role in chloroplast development as a modulator of MgProto[1].
  • The chlorophyll synthesis in developing chloroplasts may be coordinated primarily by the levels of Mg-chelatase activity, and whose mutation causes the alteration of leaf color from green to yellowish-green or albino[1].
  • chl9 mutations negatively affect the formation of thylakoid membranes during chloroplast development, meaning that Mg-chelatase activity is closely associated with the development of chloroplast components[1].

Mutation

  • chl9 mutants exhibit a yellowish-green leaf phenotype under normal growth conditions (Fig. 1B). Abnormal leaf color is first observed on the leaves of 2- to 3-week-old seedlings. And the chl9 mutant exhibits its distinctive phenotype throughout development. In addition, the chl9 mutants are viable. To characterize the chlorina phenotypes of chl9 mutants, the researchers first measured their total chlorophyll contents, and found them to be approximately 34% of wild-type Chl levels (Fig. 1D), indicating that the chlorina phenotype results from reduced chlorophyll levels. Underdeveloped thylakoid membranes, poor granum structures and non-dispersed prolamellar bodies were observed in the chloroplasts of chl9 mutant leaves (Fig. 2C, F)[1].
Fig. 1 Characterization of the chl9 mutants. [1].
Fig. 2 Electron microscopic analysis of wild-type and chl9 mutants. [1].
  • The MgProto(ME) content of chl9 leaves was lower than 31% of its wild-type indica cultivar, IR36 (Fig. 3). These results verify that the missense mutations in ChlI of chl9 result in the reduction of Mg-chelatase activity and thereby cause decreased chlorophyll accumulation in chl9 mutant leaves[1].
Fig. 2 Electron microscopic analysis of wild-type and chl9 mutants. [1].


Labs working on this gene

  • Department of Plant Science, Seoul National University Seoul 151-921, Republic of Korea

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Cite error: Invalid <ref> tag; no text was provided for refs named ref1

Structured Information