Difference between revisions of "Os08g0101000"
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Transcription factor IDEF1 early response to iron deficiency in rice necessary to express the late vegetative stage embryos while rich protein gene induction. Higher plants by regulating the expression of genes related to iron to maintain the plants get iron homeostasis of body iron content. IDEF1 to adjust the response of rice to iron deficiency by identifying the response CATGC sequence cis-elements IDE1. Medium to induce the expression of iron-deficiency treatment IDEF and suppress the expression of the two types of transgenic plants was found, and induce the expression of plant IDEF1 compared to suppress the expression of plant IDEF1 early iron deficiency is very sensitive. | Transcription factor IDEF1 early response to iron deficiency in rice necessary to express the late vegetative stage embryos while rich protein gene induction. Higher plants by regulating the expression of genes related to iron to maintain the plants get iron homeostasis of body iron content. IDEF1 to adjust the response of rice to iron deficiency by identifying the response CATGC sequence cis-elements IDE1. Medium to induce the expression of iron-deficiency treatment IDEF and suppress the expression of the two types of transgenic plants was found, and induce the expression of plant IDEF1 compared to suppress the expression of plant IDEF1 early iron deficiency is very sensitive. | ||
| − | [[File:QQ截图20140609160851.png]]===Expression=== | + | [[File:QQ截图20140609160851.png]] |
| − | Please input expression information here. | + | ===Expression=== |
| − | + | Please input expression information here.IDEF1 cDNA full length 1704bp, contains nine exons and encodes a transcription factor of 362 amino acids, B3 domain-containing products. IDEF1 ABI3/VP1 is a plant-specific transcription factor protein, with the iron deficiency response cis-elements IDE1 the CATGC sequence binding. In the early treatment of iron deficiency, IDEF1 expression of these genes by binding to iron absorption and utilization of the relevant gene promoter elements regulate the CATGC mediated early plant response to iron deficiency (Kobayashi et al., 2007 & 2009).By IDEF1 regulate gene promoter also contains the necessary regulation of gene expression in seed maturation cis-elements CATGCA. Some late embryogenesis abundant protein coding genes such as Osem, their expression in iron plant roots and / or leaves are induced, while expression is dependent on IDEF1, described IDEF1 in the regulation of seed maturation-related genes in vegetative organs of iron deficiency Expression function (Kobayashi et al., 2009).IDEF1 involved in the regulation of gene expression induced by Fe deficiency by, for maintaining the body's balance Fe plays an important role. IDEF1 histidine - arginine and proline-rich region of direct binding of divalent metal, balanced feel of metal ions in the cell (Kobayashi et al 2012.). | |
| − | IDEF1 cDNA full length 1704bp, contains nine exons and encodes a transcription factor of 362 amino acids, B3 domain-containing products. IDEF1 ABI3/VP1 is a plant-specific transcription factor protein, with the iron deficiency response cis-elements IDE1 the CATGC sequence binding. In the early treatment of iron deficiency, IDEF1 expression of these genes by binding to iron absorption and utilization of the relevant gene promoter elements regulate the CATGC mediated early plant response to iron deficiency (Kobayashi et al., 2007 & 2009). | ||
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| − | By IDEF1 regulate gene promoter also contains the necessary regulation of gene expression in seed maturation cis-elements CATGCA. Some late embryogenesis abundant protein coding genes such as Osem, their expression in iron plant roots and / or leaves are induced, while expression is dependent on IDEF1, described IDEF1 in the regulation of seed maturation-related genes in vegetative organs of iron deficiency Expression function (Kobayashi et al., 2009). | ||
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| − | IDEF1 involved in the regulation of gene expression induced by Fe deficiency by, for maintaining the body's balance Fe plays an important role. IDEF1 histidine - arginine and proline-rich region of direct binding of divalent metal, balanced feel of metal ions in the cell (Kobayashi et al 2012.). | ||
===Evolution=== | ===Evolution=== | ||
| Line 21: | Line 16: | ||
==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | *Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan, | |
| − | + | *Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi-machi, Ishikawa 921-8836, Japan | |
==References== | ==References== | ||
Please input cited references here. | Please input cited references here. | ||
| + | 1. Takanori Kobayashi;Reiko Nakanishi Itai;May Sann Aung;Takeshi Senoura;Hiromi Nakanishi;Naoko K. Nishizawa | ||
| + | The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status | ||
| + | The Plant Journal, 2012, 69(1): 81-91 | ||
| + | 2. Takanori Kobayashi;Reiko Nakanishi Itai;Yuko Ogo;Yusuke Kakei;Hiromi Nakanishi;Michiko Takahashi;Naoko K. Nishizawa | ||
| + | The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes | ||
| + | The Plant Journal, 2009, 60(6): 948-961 | ||
| + | 3. Takanori Kobayashi;Yuko Ogo;Reiko Nakanishi Itai;Hiromi Nakanishi;Michiko Takahashi;Satoshi Mori;Naoko K. Nishizawa | ||
| + | The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants | ||
| + | Proc Natl Acad Sci USA, 2007, 104(48): 19150-19155 | ||
==Structured Information== | ==Structured Information== | ||
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[[Category:Genes]] | [[Category:Genes]] | ||
[[Category:Japonica mRNA]] | [[Category:Japonica mRNA]] | ||
Latest revision as of 01:53, 8 August 2016
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here. Transcription factor IDEF1 early response to iron deficiency in rice necessary to express the late vegetative stage embryos while rich protein gene induction. Higher plants by regulating the expression of genes related to iron to maintain the plants get iron homeostasis of body iron content. IDEF1 to adjust the response of rice to iron deficiency by identifying the response CATGC sequence cis-elements IDE1. Medium to induce the expression of iron-deficiency treatment IDEF and suppress the expression of the two types of transgenic plants was found, and induce the expression of plant IDEF1 compared to suppress the expression of plant IDEF1 early iron deficiency is very sensitive.
Expression
Please input expression information here.IDEF1 cDNA full length 1704bp, contains nine exons and encodes a transcription factor of 362 amino acids, B3 domain-containing products. IDEF1 ABI3/VP1 is a plant-specific transcription factor protein, with the iron deficiency response cis-elements IDE1 the CATGC sequence binding. In the early treatment of iron deficiency, IDEF1 expression of these genes by binding to iron absorption and utilization of the relevant gene promoter elements regulate the CATGC mediated early plant response to iron deficiency (Kobayashi et al., 2007 & 2009).By IDEF1 regulate gene promoter also contains the necessary regulation of gene expression in seed maturation cis-elements CATGCA. Some late embryogenesis abundant protein coding genes such as Osem, their expression in iron plant roots and / or leaves are induced, while expression is dependent on IDEF1, described IDEF1 in the regulation of seed maturation-related genes in vegetative organs of iron deficiency Expression function (Kobayashi et al., 2009).IDEF1 involved in the regulation of gene expression induced by Fe deficiency by, for maintaining the body's balance Fe plays an important role. IDEF1 histidine - arginine and proline-rich region of direct binding of divalent metal, balanced feel of metal ions in the cell (Kobayashi et al 2012.).
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan,
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi-machi, Ishikawa 921-8836, Japan
References
Please input cited references here. 1. Takanori Kobayashi;Reiko Nakanishi Itai;May Sann Aung;Takeshi Senoura;Hiromi Nakanishi;Naoko K. Nishizawa
The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status The Plant Journal, 2012, 69(1): 81-91
2. Takanori Kobayashi;Reiko Nakanishi Itai;Yuko Ogo;Yusuke Kakei;Hiromi Nakanishi;Michiko Takahashi;Naoko K. Nishizawa
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes The Plant Journal, 2009, 60(6): 948-961
3. Takanori Kobayashi;Yuko Ogo;Reiko Nakanishi Itai;Hiromi Nakanishi;Michiko Takahashi;Satoshi Mori;Naoko K. Nishizawa
The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants Proc Natl Acad Sci USA, 2007, 104(48): 19150-19155
