Difference between revisions of "Os02g0214300"

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(Created page with "{{JaponicaGene| GeneName = Os02g0214300| Description = Similar to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase EL...")
 
(→‎Function)
 
(4 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0214300''''' was reported as '''''tms5''''' in 2003 <ref name="ref1" /> and 2006 <ref name="ref2" /> by researchers from China and Japan.  
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GeneName = Os02g0214300|
 
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Description = Similar to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase ELAC) (Fragment)|
 
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Version = NM_001052815.1 GI:115445000 GeneID:4328713|
 
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Length = 1895 bp|
 
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Definition = Oryza sativa Japonica Group Os02g0214300, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0214300''''' '''<=>''' '''''tms5''''','''''OsTMS5'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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* TGMS rice is important to hybrid rice production because the appli- cation of the TGMS system in two-line breeding is cost-eVective, simple, eYcient and overcomes the limitations of the cytoplasmic male sterility (CMS) system.
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AP = Chromosome 2:6426342..6428236|
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* The thermo-sensitive genic male-sterile (TGMS) gene in rice was regulated by temperature.
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CDS = 6426342..6426821,6426927..6427022,6427132..6427245,6427623..6427691,6427791..6427865<br>,6428162..6428236|
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* AnnongS-1, a thermo-sensitive genic male-sterile (TGMS) rice line, has a new TGMS gene.  
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GCID = <gbrowseImage1>
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* '''''OsTMS5''''' is a single resessive gene which can control the sterility of AnnongS-1.
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name=NC_008395:6426342..6428236
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source=RiceChromosome02
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preset=GeneLocation
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[[File:Os02g0214300_1.png|center|thumb|800px|'''Figure 2''' ''The amplification results of AFLP markers of E:AA/M:CTG<ref name="ref1" />.'']]
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</gbrowseImage1>|
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GSID = <gbrowseImage2>
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name=NC_008395:6426342..6428236
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source=RiceChromosome02
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You can also add sub-section(s) at will.
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preset=GeneLocation
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</gbrowseImage2>|
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==Labs working on this gene==
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CDNA = <cdnaseq>atggcgaacagcggcaagtcatcgccggcggcgacctccaccaccgcgccgccaccgggtcggccgaaggcgaaggcgccgcccctcaccgtcgagggctaccccgtggagggcatctccatcggcgggcaggagacctgcgtcatcttcccgacgctgagcgccgccttcgacatcggccggtgcccgcagcgcgccgtctcgcaggagttcctcttcatctcccacgcccacctcgaccacatcggcggcctccccatgtacgtcgccacccggggcctctaccggcagcgcccgcccaccatcttcatccccgcctgcctcagggaccccgtggagcgcctcttcgagctccaccgctccatggaccagtccgagctcagccacaacctcgtccccctcgagattggtcaggagcacgagctcaggagggacctcaaggtgaaggccttcaagacctaccacgccattcccagccaggggtatgtgatatacacggtgaagcaaaagctcaagccagagtatcttggcctccctgggagcgagatcaagcagctgaagctgtcaggtgtggagattacgaatacattgacggtgcctgagattgcttttaccggagatacgatggcagatttcattcttgatcctgataatgcggatgttttgaaggcgaaaattcttgtagtggagagtacttttgttgatgactctgttacaattgagcatgcaagagaatatgggcacacccatctgtttgagatactgaatcagtgtgacaaacttgaaaacaaagctattctgctaatccacttttctgctcgttataccgcagaggaaattgatatagcaatcaataagttgccaccctctttcagaagtagagttcatgcattgaaggaaggtttctga</cdnaseq>|
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* Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
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AA = <aaseq>MANSGKSSPAATSTTAPPPGRPKAKAPPLTVEGYPVEGISIGGQ                    ETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMYVATRGLYRQRPPTI                    FIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKVKAFKTYHAIPSQ                    GYVIYTVKQKLKPEYLGLPGSEIKQLKLSGVEITNTLTVPEIAFTGDTMADFILDPDN                    ADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCDKLENKAILLIHFSARYT                    AEEIDIAINKLPPSFRSRVHALKEGF</aaseq>|
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DNA = <dnaseqindica>1..480#586..681#791..904#1282..1350#1450..1524#1821..1895#atggcgaacagcggcaagtcatcgccggcggcgacctccaccaccgcgccgccaccgggtcggccgaaggcgaaggcgccgcccctcaccgtcgagggctaccccgtggagggcatctccatcggcgggcaggagacctgcgtcatcttcccgacgctgagcgccgccttcgacatcggccggtgcccgcagcgcgccgtctcgcaggagttcctcttcatctcccacgcccacctcgaccacatcggcggcctccccatgtacgtcgccacccggggcctctaccggcagcgcccgcccaccatcttcatccccgcctgcctcagggaccccgtggagcgcctcttcgagctccaccgctccatggaccagtccgagctcagccacaacctcgtccccctcgagattggtcaggagcacgagctcaggagggacctcaaggtgaaggccttcaagacctaccacgccattcccagccaggtgaagggttcatcagttcttggttgttctggatgaattattcttgattgattgatttggtcggaaatgtgtggtgaatttggttgagatgtgatgtgattgtaggggtatgtgatatacacggtgaagcaaaagctcaagccagagtatcttggcctccctgggagcgagatcaagcagctgaagctgtcaggtgtggaggtctgttgttgtttttttttttttttgatattgtggatgtctggatgaaatggaatacaattcacaatttagttatgttgttgatgctgtgcgtggttctgtttttcagattacgaatacattgacggtgcctgagattgcttttaccggagatacgatggcagatttcattcttgatcctgataatgcggatgttttgaaggcgaaaattcttgtagtggaggtattgcttcttatcgtctatatggttaatttgttgtcaattgtcattgttgctattcagcctgagaaaaaaaaaagagggaaactgtttcttcaagcacggatatcagtatattaccaagattaattttatcaacagaaggaaaagcaacagcctttgcttttcaggagagattgattccaactccatattaactgataactgagtaccattttttcaaactgaaacctttgcggaaccaattggcagcaattagtgggaactatgttgcctgaagcatgtttcagtttccatactgaatatttattgtccttctcctgacgaaattttaattatctccaaatttaacttagtgaactgtgttctggaaattgcagagtacttttgttgatgactctgttacaattgagcatgcaagagaatatgggcacacccatctgtttgaggttattcccaaattttgcttatttcatatttctgtggaagaaaaacatttcacctagcattgctaattttgcccttatcttttttttttatgtatgcagatactgaatcagtgtgacaaacttgaaaacaaagctattctgctaatccacttttctgctcgttataccgcagaggtgagctatctctgttgtaatccaattttacttatatcattttatcctgattcaattagtaatctgtatgctttgtttcaactctgtggatttattttttgtttcaagcaagtttcaccaatattgttattttttaatgccatcattatgagcaggcaaaatgtgcccacttttcttgtagcatcctcctttcctcttaaaagtacacatgtttgtgtttcattctttacaaataaatacatttatcttcaatttttttctcaccatcattaaacatttcatcacatccttttcaggaaattgatatagcaatcaataagttgccaccctctttcagaagtagagttcatgcattgaaggaaggtttctga</dnaseqindica>|
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==References==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052815.1 RefSeq:Os02g0214300]|
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<references>
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}}
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* <ref name="ref1">
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[[Category:Genes]]
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Wang YG, Xing QH, Deng QY, Liang FS, Yuan LP, Weng ML, Wang B. Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5. Theor Appl Genet. 2003 Sep;107(5):917-21. Epub 2003 Jun 25. PubMed PMID: 12827251.
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[[Category:Japonica mRNA]]
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</ref>
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[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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* <ref name="ref2">
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[[Category:Japonica Chromosome 2]]
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Yang Q, Liang C, Zhuang W, Li J, Deng H, Deng Q, Wang B. Characterization and  identification of the candidate gene of rice thermo-sensitive genic male sterile  gene tms5 by mapping. Planta. 2007 Jan;225(2):321-30. Epub 2006 Aug 2. PubMed PMID: 16896793.
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[[Category:Chromosome 2]]
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</ref>
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</references>
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 07:59, 3 October 2016

The rice Os02g0214300 was reported as tms5 in 2003 [1] and 2006 [2] by researchers from China and Japan.

Annotated Information

Gene Symbol

  • Os02g0214300 <=> tms5,OsTMS5

Function

  • TGMS rice is important to hybrid rice production because the appli- cation of the TGMS system in two-line breeding is cost-eVective, simple, eYcient and overcomes the limitations of the cytoplasmic male sterility (CMS) system.
  • The thermo-sensitive genic male-sterile (TGMS) gene in rice was regulated by temperature.
  • AnnongS-1, a thermo-sensitive genic male-sterile (TGMS) rice line, has a new TGMS gene.
  • OsTMS5 is a single resessive gene which can control the sterility of AnnongS-1.


Figure 2 The amplification results of AFLP markers of E:AA/M:CTG[1].


You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China

References

  1. ↑ 1.0 1.1 Wang YG, Xing QH, Deng QY, Liang FS, Yuan LP, Weng ML, Wang B. Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5. Theor Appl Genet. 2003 Sep;107(5):917-21. Epub 2003 Jun 25. PubMed PMID: 12827251.
  2. ↑ Yang Q, Liang C, Zhuang W, Li J, Deng H, Deng Q, Wang B. Characterization and identification of the candidate gene of rice thermo-sensitive genic male sterile gene tms5 by mapping. Planta. 2007 Jan;225(2):321-30. Epub 2006 Aug 2. PubMed PMID: 16896793.


Structured Information