Difference between revisions of "Os02g0214300"

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(Created page with "{{JaponicaGene| GeneName = Os02g0214300| Description = Similar to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase EL...")
 
(Function)
 
(4 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0214300''''' was reported as '''''tms5''''' in 2003 <ref name="ref1" /> and 2006 <ref name="ref2" /> by researchers from China and Japan.  
GeneName = Os02g0214300|
 
Description = Similar to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase ELAC) (Fragment)|
 
Version = NM_001052815.1 GI:115445000 GeneID:4328713|
 
Length = 1895 bp|
 
Definition = Oryza sativa Japonica Group Os02g0214300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0214300''''' '''<=>''' '''''tms5''''','''''OsTMS5'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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* TGMS rice is important to hybrid rice production because the appli- cation of the TGMS system in two-line breeding is cost-eVective, simple, eYcient and overcomes the limitations of the cytoplasmic male sterility (CMS) system.
AP = Chromosome 2:6426342..6428236|
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* The thermo-sensitive genic male-sterile (TGMS) gene in rice was regulated by temperature.
CDS = 6426342..6426821,6426927..6427022,6427132..6427245,6427623..6427691,6427791..6427865<br>,6428162..6428236|
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* AnnongS-1, a thermo-sensitive genic male-sterile (TGMS) rice line, has a new TGMS gene.  
GCID = <gbrowseImage1>
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* '''''OsTMS5''''' is a single resessive gene which can control the sterility of AnnongS-1.
name=NC_008395:6426342..6428236
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source=RiceChromosome02
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preset=GeneLocation
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[[File:Os02g0214300_1.png|center|thumb|800px|'''Figure 2''' ''The amplification results of AFLP markers of E:AA/M:CTG<ref name="ref1" />.'']]
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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name=NC_008395:6426342..6428236
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source=RiceChromosome02
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You can also add sub-section(s) at will.
preset=GeneLocation
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</gbrowseImage2>|
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==Labs working on this gene==
CDNA = <cdnaseq>atggcgaacagcggcaagtcatcgccggcggcgacctccaccaccgcgccgccaccgggtcggccgaaggcgaaggcgccgcccctcaccgtcgagggctaccccgtggagggcatctccatcggcgggcaggagacctgcgtcatcttcccgacgctgagcgccgccttcgacatcggccggtgcccgcagcgcgccgtctcgcaggagttcctcttcatctcccacgcccacctcgaccacatcggcggcctccccatgtacgtcgccacccggggcctctaccggcagcgcccgcccaccatcttcatccccgcctgcctcagggaccccgtggagcgcctcttcgagctccaccgctccatggaccagtccgagctcagccacaacctcgtccccctcgagattggtcaggagcacgagctcaggagggacctcaaggtgaaggccttcaagacctaccacgccattcccagccaggggtatgtgatatacacggtgaagcaaaagctcaagccagagtatcttggcctccctgggagcgagatcaagcagctgaagctgtcaggtgtggagattacgaatacattgacggtgcctgagattgcttttaccggagatacgatggcagatttcattcttgatcctgataatgcggatgttttgaaggcgaaaattcttgtagtggagagtacttttgttgatgactctgttacaattgagcatgcaagagaatatgggcacacccatctgtttgagatactgaatcagtgtgacaaacttgaaaacaaagctattctgctaatccacttttctgctcgttataccgcagaggaaattgatatagcaatcaataagttgccaccctctttcagaagtagagttcatgcattgaaggaaggtttctga</cdnaseq>|
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* Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
AA = <aaseq>MANSGKSSPAATSTTAPPPGRPKAKAPPLTVEGYPVEGISIGGQ                    ETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMYVATRGLYRQRPPTI                    FIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKVKAFKTYHAIPSQ                    GYVIYTVKQKLKPEYLGLPGSEIKQLKLSGVEITNTLTVPEIAFTGDTMADFILDPDN                    ADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCDKLENKAILLIHFSARYT                    AEEIDIAINKLPPSFRSRVHALKEGF</aaseq>|
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DNA = <dnaseqindica>1..480#586..681#791..904#1282..1350#1450..1524#1821..1895#atggcgaacagcggcaagtcatcgccggcggcgacctccaccaccgcgccgccaccgggtcggccgaaggcgaaggcgccgcccctcaccgtcgagggctaccccgtggagggcatctccatcggcgggcaggagacctgcgtcatcttcccgacgctgagcgccgccttcgacatcggccggtgcccgcagcgcgccgtctcgcaggagttcctcttcatctcccacgcccacctcgaccacatcggcggcctccccatgtacgtcgccacccggggcctctaccggcagcgcccgcccaccatcttcatccccgcctgcctcagggaccccgtggagcgcctcttcgagctccaccgctccatggaccagtccgagctcagccacaacctcgtccccctcgagattggtcaggagcacgagctcaggagggacctcaaggtgaaggccttcaagacctaccacgccattcccagccaggtgaagggttcatcagttcttggttgttctggatgaattattcttgattgattgatttggtcggaaatgtgtggtgaatttggttgagatgtgatgtgattgtaggggtatgtgatatacacggtgaagcaaaagctcaagccagagtatcttggcctccctgggagcgagatcaagcagctgaagctgtcaggtgtggaggtctgttgttgtttttttttttttttgatattgtggatgtctggatgaaatggaatacaattcacaatttagttatgttgttgatgctgtgcgtggttctgtttttcagattacgaatacattgacggtgcctgagattgcttttaccggagatacgatggcagatttcattcttgatcctgataatgcggatgttttgaaggcgaaaattcttgtagtggaggtattgcttcttatcgtctatatggttaatttgttgtcaattgtcattgttgctattcagcctgagaaaaaaaaaagagggaaactgtttcttcaagcacggatatcagtatattaccaagattaattttatcaacagaaggaaaagcaacagcctttgcttttcaggagagattgattccaactccatattaactgataactgagtaccattttttcaaactgaaacctttgcggaaccaattggcagcaattagtgggaactatgttgcctgaagcatgtttcagtttccatactgaatatttattgtccttctcctgacgaaattttaattatctccaaatttaacttagtgaactgtgttctggaaattgcagagtacttttgttgatgactctgttacaattgagcatgcaagagaatatgggcacacccatctgtttgaggttattcccaaattttgcttatttcatatttctgtggaagaaaaacatttcacctagcattgctaattttgcccttatcttttttttttatgtatgcagatactgaatcagtgtgacaaacttgaaaacaaagctattctgctaatccacttttctgctcgttataccgcagaggtgagctatctctgttgtaatccaattttacttatatcattttatcctgattcaattagtaatctgtatgctttgtttcaactctgtggatttattttttgtttcaagcaagtttcaccaatattgttattttttaatgccatcattatgagcaggcaaaatgtgcccacttttcttgtagcatcctcctttcctcttaaaagtacacatgtttgtgtttcattctttacaaataaatacatttatcttcaatttttttctcaccatcattaaacatttcatcacatccttttcaggaaattgatatagcaatcaataagttgccaccctctttcagaagtagagttcatgcattgaaggaaggtttctga</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052815.1 RefSeq:Os02g0214300]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Wang YG, Xing QH, Deng QY, Liang FS, Yuan LP, Weng ML, Wang B. Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5. Theor Appl Genet. 2003 Sep;107(5):917-21. Epub 2003 Jun 25. PubMed PMID: 12827251.
[[Category:Japonica mRNA]]
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</ref>
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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* <ref name="ref2">
[[Category:Japonica Chromosome 2]]
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Yang Q, Liang C, Zhuang W, Li J, Deng H, Deng Q, Wang B. Characterization and  identification of the candidate gene of rice thermo-sensitive genic male sterile  gene tms5 by mapping. Planta. 2007 Jan;225(2):321-30. Epub 2006 Aug 2. PubMed PMID: 16896793.
[[Category:Chromosome 2]]
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</ref>
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</references>
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 +
 
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 07:59, 3 October 2016

The rice Os02g0214300 was reported as tms5 in 2003 [1] and 2006 [2] by researchers from China and Japan.

Annotated Information

Gene Symbol

  • Os02g0214300 <=> tms5,OsTMS5

Function

  • TGMS rice is important to hybrid rice production because the appli- cation of the TGMS system in two-line breeding is cost-eVective, simple, eYcient and overcomes the limitations of the cytoplasmic male sterility (CMS) system.
  • The thermo-sensitive genic male-sterile (TGMS) gene in rice was regulated by temperature.
  • AnnongS-1, a thermo-sensitive genic male-sterile (TGMS) rice line, has a new TGMS gene.
  • OsTMS5 is a single resessive gene which can control the sterility of AnnongS-1.


Figure 2 The amplification results of AFLP markers of E:AA/M:CTG[1].


You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China

References

  1. 1.0 1.1 Wang YG, Xing QH, Deng QY, Liang FS, Yuan LP, Weng ML, Wang B. Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5. Theor Appl Genet. 2003 Sep;107(5):917-21. Epub 2003 Jun 25. PubMed PMID: 12827251.
  2. Yang Q, Liang C, Zhuang W, Li J, Deng H, Deng Q, Wang B. Characterization and identification of the candidate gene of rice thermo-sensitive genic male sterile gene tms5 by mapping. Planta. 2007 Jan;225(2):321-30. Epub 2006 Aug 2. PubMed PMID: 16896793.


Structured Information