Difference between revisions of "Os04g0531400"

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Please input one-sentence summary here.
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The rice '''''Os04g0531400''''' was reported as '''''OsSIT2''''' in 2014 <ref name="ref1" /> by researchers from China.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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[[File:Os02g0640500-1.png|right|thumb|227px|'''Figure 2.''' ''Real-time PCR analysis of the SIT1, SIT2, and SIT3 mRNA levels in the RNAi seedlings.<ref name="ref1" />.'']]
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*'''''Os04g0531400''''' '''<=>''' '''''OsSIT2''''','''''SIT2'''''
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===Function===
 
===Function===
Please input function information here.
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* The RLKs '''''SIT2''''' Negatively Regulate Salt Tolerance in Rice
 
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* '''''SIT1''''' and '''''SIT2''''' each contribute to salt sensitivity and that their functions are not overlapping.
 
===Expression===
 
===Expression===
Please input expression information here.
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* '''''SIT1''''' and '''''SIT2''''' RNA expression was analyzed by quantitative RT-PCR in various tissues; the highest level of '''''SIT1''''' and a relatively high level of '''''SIT2''''' were detected in roots. '''''SIT1''''' and '''''SIT2''''' transcripts were mainly concentrated in the maturation zone, the region that produces lateral roots and root hairs.
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* In RNAi plants, the transcript level of SIT1 was reduced more dramatically than that of '''''SIT2'''''. These results suggest that '''''SIT1''''' is a major contributor to root function and is responsible for the RNAi phenotype.
  
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* Hebei Key Laboratory of Molecular and Cellular Biology, Hebei 050024, P.R. China
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* Laboratory of Molecular and Cellular Biology of Ministry of Education, College of Life Science, Hebei Normal University, Hebei 050024, P.R. China
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* Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang, Hebei 050024, P.R. China
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* Hebei Entry-Exit Inspection and Quarantine Bureau of China, Shijiazhuang, Hebei 050028, P.R. China
  
 
==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Li CH, Wang G, Zhao JL, Zhang LQ, Ai LF, Han YF, Sun DY, Zhang SW, Sun Y. The  Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice. Plant Cell. 2014 Jun 6;26(6):2538-2553. [Epub ahead of print] PubMed PMID: 24907341; PubMed Central PMCID: PMC4114950.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
GeneName = Os04g0531400|
 
Description = Similar to Lectin-like receptor kinase 7|
 
Version = NM_001059931.1 GI:115459591 GeneID:4336489|
 
Length = 2267 bp|
 
Definition = Oryza sativa Japonica Group Os04g0531400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
AP = Chromosome 4:26971305..26973571|
 
CDS = 26971479..26973106,26973218..26973500|
 
GCID = <gbrowseImage1>
 
name=NC_008397:26971305..26973571
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008397:26971305..26973571
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggtgcttcccaaaccagaaatgccgttctttgtcctgctcctcttcctcggcctcggctgcctccgcccggcggcggcgaccgacgagcggttcgtcttcaacgggttcaccggcgccaacctcagcttcgacggcatggcaacggtgacctcgaacgggctgctcatgctgaccaacggcacgaaccagctcaagggccacgccttcttcccgtcgccgctccagttccagagggggcccaacagcacggcgatgcagtccttctccacggccttcgtcaactccgccaacaacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcggagttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactccgtcgacgccgacaacgccgggtactacgacgacggcaccggcgacttcaagaacatgagcctggtgagccgcaggccgatgcaggtgtgggtggacttcgacggccagaccatgcaggtcaatgtcaccatggcgccgctggaggtggcgcggccaaagaagcccctgctgtccaaaatcgtcaacatctcctccgtcattgatgacaccgcctacgtcggcttctcctcggcgaccggcatcctcttctgccgccactacgtgctcggctggagcttcaagatgaacggcgccgcgccggcgctcaacatctcatccctgccctccctgccggtcacgttccccaagccgcggtccaagacgcttgagatcgtgctgccgatagcctcggcggtgctcgtcttcgcggtggccgccgccgtgttcgtgttcatgcggcggcggcgcatgttctcggagctcaaggaggagtgggaggtgacgttcgggcctcacaggttctcgtacaaggacctgttccacgccaccgacgggttcagcgacaagcggctcctcggcatcggcgggttcgggcgcgtgtaccgtggcgtgctcccgtcgtccaaggcggaggtcgccgtgaagaaggtggcgcacgggtcgaggcaggggatgagggagttcgtggcggaggtggtcagcatcggccggctccggcaccggaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtgtacgactacatgcccaacggcagcctggacaagcagctgtacgaccagggcaagatcaccctgagatgggcgcagaggttccgcatcatcaggggcgtcgcgtccgggctgctctacctccacgaggactgggagcaggtggtggtgcacagggacatcaaggccagcaacgtgctgctcgacgccgacatgaacggccggctcggcgacttcggcctggcgcggctgtacgaccacggcaccgacccgcacacgacgcacgtggtgggcaccatgggctacctggcgccggagctggggcacaccggcaaggcgtccaaggcgtcggacgtgttcgcgttcggggccttcatgctggaggtggcgtgcgggcggaagcccgtggcgcaggacgcgcgcgacaaccgcgtcgtgctcgtcgactgggtgctcgaccggtggcgcgccggggcgatcacggacacggtggacccgcgcctgcacggcgacttcgtcgagagcgaggcgagcctcgtgctgcggctgggcctgctgtgctcgcacccgctgcccggcgcacggccggggacgaggcagcttgtgcagtacctggaaggcgacgtgccgctgccggagctgtcgccgacgtaccagagcttcaacatgctggcgctcatgcaggaccaggggttcgacccctacgtcatgtcctacccgatgacatccaccagcgcaggcaccttctctgacctctctggaggtagatga</cdnaseq>|
 
AA = <aaseq>MVLPKPEMPFFVLLLFLGLGCLRPAAATDERFVFNGFTGANLSF                    DGMATVTSNGLLMLTNGTNQLKGHAFFPSPLQFQRGPNSTAMQSFSTAFVNSANNGNA                    TNHLFAVEFDTILNSEFNDMSGNHVGIDVNGLNSVDADNAGYYDDGTGDFKNMSLVSR                    RPMQVWVDFDGQTMQVNVTMAPLEVARPKKPLLSKIVNISSVIDDTAYVGFSSATGIL                    FCRHYVLGWSFKMNGAAPALNISSLPSLPVTFPKPRSKTLEIVLPIASAVLVFAVAAA                    VFVFMRRRRMFSELKEEWEVTFGPHRFSYKDLFHATDGFSDKRLLGIGGFGRVYRGVL                    PSSKAEVAVKKVAHGSRQGMREFVAEVVSIGRLRHRNLVQLLGYCRRKGELLLVYDYM                    PNGSLDKQLYDQGKITLRWAQRFRIIRGVASGLLYLHEDWEQVVVHRDIKASNVLLDA                    DMNGRLGDFGLARLYDHGTDPHTTHVVGTMGYLAPELGHTGKASKASDVFAFGAFMLE                    VACGRKPVAQDARDNRVVLVDWVLDRWRAGAITDTVDPRLHGDFVESEASLVLRLGLL                    CSHPLPGARPGTRQLVQYLEGDVPLPELSPTYQSFNMLALMQDQGFDPYVMSYPMTST                    SAGTFSDLSGGR</aaseq>|
 
DNA = <dnaseqindica>466..2093#72..354#aatagaagcagcaaagcttgggcatttggtgaggcactgattgaagctcagcactaggcgaagtgcagggcatggtgcttcccaaaccagaaatgccgttctttgtcctgctcctcttcctcggcctcggctgcctccgcccggcggcggcgaccgacgagcggttcgtcttcaacgggttcaccggcgccaacctcagcttcgacggcatggcaacggtgacctcgaacgggctgctcatgctgaccaacggcacgaaccagctcaagggccacgccttcttcccgtcgccgctccagttccagagggggcccaacagcacggcgatgcagtccttctccacggccttcgtcatcggcatcatcggcgcgttcgaggacctgagcagccacggcatggcgttcatcatcgccaagagcaagaacctcacctcggcgctgccggggcagttcatggggctcgtcaactccgccaacaacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcggagttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactccgtcgacgccgacaacgccgggtactacgacgacggcaccggcgacttcaagaacatgagcctggtgagccgcaggccgatgcaggtgtgggtggacttcgacggccagaccatgcaggtcaatgtcaccatggcgccgctggaggtggcgcggccaaagaagcccctgctgtccaaaatcgtcaacatctcctccgtcattgatgacaccgcctacgtcggcttctcctcggcgaccggcatcctcttctgccgccactacgtgctcggctggagcttcaagatgaacggcgccgcgccggcgctcaacatctcatccctgccctccctgccggtcacgttccccaagccgcggtccaagacgcttgagatcgtgctgccgatagcctcggcggtgctcgtcttcgcggtggccgccgccgtgttcgtgttcatgcggcggcggcgcatgttctcggagctcaaggaggagtgggaggtgacgttcgggcctcacaggttctcgtacaaggacctgttccacgccaccgacgggttcagcgacaagcggctcctcggcatcggcgggttcgggcgcgtgtaccgtggcgtgctcccgtcgtccaaggcggaggtcgccgtgaagaaggtggcgcacgggtcgaggcaggggatgagggagttcgtggcggaggtggtcagcatcggccggctccggcaccggaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtgtacgactacatgcccaacggcagcctggacaagcagctgtacgaccagggcaagatcaccctgagatgggcgcagaggttccgcatcatcaggggcgtcgcgtccgggctgctctacctccacgaggactgggagcaggtggtggtgcacagggacatcaaggccagcaacgtgctgctcgacgccgacatgaacggccggctcggcgacttcggcctggcgcggctgtacgaccacggcaccgacccgcacacgacgcacgtggtgggcaccatgggctacctggcgccggagctggggcacaccggcaaggcgtccaaggcgtcggacgtgttcgcgttcggggccttcatgctggaggtggcgtgcgggcggaagcccgtggcgcaggacgcgcgcgacaaccgcgtcgtgctcgtcgactgggtgctcgaccggtggcgcgccggggcgatcacggacacggtggacccgcgcctgcacggcgacttcgtcgagagcgaggcgagcctcgtgctgcggctgggcctgctgtgctcgcacccgctgcccggcgcacggccggggacgaggcagcttgtgcagtacctggaaggcgacgtgccgctgccggagctgtcgccgacgtaccagagcttcaacatgctggcgctcatgcaggaccaggggttcgacccctacgtcatgtcctacccgatgacatccaccagcgcaggcaccttctctgacctctctggaggtagatgatgacccgttcccatcagccggatgtagttaatcagtacctaactagtatcatcctgttttgtttaagatcagaactttggtgttgttatgtttatatctatgatgtaaagtggtgttacgagaatagctcagtgttcagataagagctgagaaataacagatctgaaattaaac</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059931.1 RefSeq:Os04g0531400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 4]]
 
[[Category:Chromosome 4]]
 

Latest revision as of 12:20, 3 October 2016

The rice Os04g0531400 was reported as OsSIT2 in 2014 [1] by researchers from China.

Annotated Information

Gene Symbol

Figure 2. Real-time PCR analysis of the SIT1, SIT2, and SIT3 mRNA levels in the RNAi seedlings.[1].


  • Os04g0531400 <=> OsSIT2,SIT2

Function

  • The RLKs SIT2 Negatively Regulate Salt Tolerance in Rice
  • SIT1 and SIT2 each contribute to salt sensitivity and that their functions are not overlapping.

Expression

  • SIT1 and SIT2 RNA expression was analyzed by quantitative RT-PCR in various tissues; the highest level of SIT1 and a relatively high level of SIT2 were detected in roots. SIT1 and SIT2 transcripts were mainly concentrated in the maturation zone, the region that produces lateral roots and root hairs.
  • In RNAi plants, the transcript level of SIT1 was reduced more dramatically than that of SIT2. These results suggest that SIT1 is a major contributor to root function and is responsible for the RNAi phenotype.


You can also add sub-section(s) at will.

Labs working on this gene

  • Hebei Key Laboratory of Molecular and Cellular Biology, Hebei 050024, P.R. China
  • Laboratory of Molecular and Cellular Biology of Ministry of Education, College of Life Science, Hebei Normal University, Hebei 050024, P.R. China
  • Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang, Hebei 050024, P.R. China
  • Hebei Entry-Exit Inspection and Quarantine Bureau of China, Shijiazhuang, Hebei 050028, P.R. China

References

  1. 1.0 1.1 Li CH, Wang G, Zhao JL, Zhang LQ, Ai LF, Han YF, Sun DY, Zhang SW, Sun Y. The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice. Plant Cell. 2014 Jun 6;26(6):2538-2553. [Epub ahead of print] PubMed PMID: 24907341; PubMed Central PMCID: PMC4114950.

Structured Information