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| − | {{JaponicaGene|
| + | The rice '''''Os11g0153600''''' was reported as '''''YGL138(t)''''' in 2013 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os11g0153600|
| |
| − | Description = GTP-binding signal recognition particle SRP54, G-domain containing protein|
| |
| − | Version = NM_001189430.1 GI:297727990 GeneID:9267495|
| |
| − | Length = 4837 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os11g0153600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os11g0153600''''' '''<=>''' '''''YGL138(t),OsYGL138(t)''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Phenotypic Analysis=== |
| − | |
| + | * The mutant of '''''YGL138(t)''''' exhibited a distinct yellow-green leaf phenotype throughout development, reduced chlorophyll level, and arrested chloroplast development. |
| − | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
| + | |
| − | AP = Chromosome 11:2495595..2500431|
| + | ===Function=== |
| − | CDS = 2495677..2495835,2495955..2496063,2496713..2496780,2496878..2496979,2497306..2497458<br>,2497521..2497624,2497834..2497885|
| + | * '''''OsYGL138(t)''''' is involved in chloroplast development of rice |
| − | GCID = <gbrowseImage1>
| + | * '''''OsYGL138(t)''''' was predicted to encode a signal recognition particle 54 kDa (SRP54) protein and act as a chloroplast precursor |
| − | name=NC_008404:2495595..2500431
| + | ===Expression=== |
| − | source=RiceChromosome11
| + | * '''''OsYGL138(t)''''' mRNA was expressed in all tissues tested, with relatively higher levels in leaves and seeds than in other organs. |
| − | preset=GeneLocation
| + | * The expression of '''''YGL138(t)''''' does not be affected by light intensity, and the mutation occurred in the coding region of '''''YGL138(t)''''' could result in the variation of its mRNA expression. |
| − | </gbrowseImage1>| | + | <br> |
| − | GSID = <gbrowseImage2>
| + | [[File:Os11g0153600-1.png|center|thumb|800px|'''Figure 7.''' ''Expression analysis of YGL138(t) by qRT-PCR.<ref name="ref1" />.'']] |
| − | name=NC_008404:2495595..2500431
| + | |
| − | source=RiceChromosome11
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atggaggccacggcgctcacgctctcctcccgccccgccgccgccagccgctcgccggcgaagggaaccttcgcctccctccacccccgccgccgcttctccgcgcacgctgtccacctccgcgcggcccagagcgcctccctgcgcgccccctccccgggggcgaggaggagacggaggagggggagcgggctggtggtgcgggcggagatgttcgggcagctcaccaccggcctggagtccgcctggaacaagctgcgtggcgtcgatgtactaacaaaggagaatatcgttgagccaatgcgggatataagaagagcacttctggaagctgatgttagtttgcctgtagtgagaagatttgtttcgtctataagtgaaaaggctctgggttctgatcttataagaggagtccgaccggaacagcaattggtgaagattgtgcatgatgaacttgtaaaactgatgggtggagaagtatcagatctggtatttgcaaaaagtggccccacagtaatcttactggcaggcctgcaaggtgttgggaagactactgtttgcgcaaagcttgcattttacctgaagaaattgatacttatgccagagttaggtgacagggaaagagttgtatgctggtcgctgcagatgtttacaggcctgcagccattgatcaactcactatacttggtgaacaggtcggtgtaccagtttactcagaaggaacagaagccaaacctgcacaaataa</cdnaseq>|
| + | ==Labs working on this gene== |
| − | AA = <aaseq>MEATALTLSSRPAAASRSPAKGTFASLHPRRRFSAHAVHLRAAQ SASLRAPSPGARRRRRRGSGLVVRAEMFGQLTTGLESAWNKLRGVDVLTKENIVEPMR DIRRALLEADVSLPVVRRFVSSISEKALGSDLIRGVRPEQQLVKIVHDELVKLMGGEV SDLVFAKSGPTVILLAGLQGVGKTTVCAKLAFYLKKLILMPELGDRERVVCWSLQMFT GLQPLINSLYLVNRSVYQFTQKEQKPNLHK</aaseq>|
| + | * College of Life Sciences, Jiangxi Normal University, Nanchang 330022, China. |
| − | DNA = <dnaseqindica>83..241#361..469#1119..1186#1284..1385#1712..1864#1927..2030#2240..2291#tgggcccacctacagttgattctcttatcttcctcctcgcgttcgcgtcttctcttctcttcgctccgctcgctcatcggcaatggaggccacggcgctcacgctctcctcccgccccgccgccgccagccgctcgccggcgaagggaaccttcgcctccctccacccccgccgccgcttctccgcgcacgctgtccacctccgcgcggcccagagcgcctccctgcgcgccccctccccggtgcgttgctccatttcctttgggggagagctcgtgtcgcgcgcctcgtcttccgaggaaggtcgcattgtttccctaataccatgttgtgtgattatttatcatggggggttttgcagggggcgaggaggagacggaggagggggagcgggctggtggtgcgggcggagatgttcgggcagctcaccaccggcctggagtccgcctggaacaagctgcgtggcgtcggtgagtgaccctgctccttttgattctctcgtatgatgatgctctcttcaagaaaatttcgtgttaatacatttagagtaaattgcgtttagggccacattttgttaccaaagattcattttggactaacctttaacacattttttcactttgggctaggttactttacctttctttcactttggaccactccataaactttttaggaatatataaataacatttccaactttaaacacatcagcaacccgtaaaccggtaatcttttccaacttacacggacaattctttacaacattatagagtagatgcagctacagaaaatgacttggggtggtccaaagtgcaccaaaggtaatcttacctaatccaaagtgaaaatataggttagaggatagtccaaagtgaaactttggtaacaaaaggtggaccaaagtgcaattaactcatacatttattactttctccatttcacaatgtaagactttctagcattgtccacgttcatatagatgctaatgaatatagacaagtcttgcattgtgaaacggatggagtacttaattattcagtacttaattgttcatatgcacactagtattattcagtactcactcacaagaattaatgcgatctcttcttactttagatgtactaacaaaggagaatatcgttgagccaatgcgggatataagaagagcacttctggaagctgatgtaagtgtgcaatgtgttaactacaggtttgcattttcagtatggtttcattttgcacctgaattaatagtcctaatgcagctcctgctttctgcaggttagtttgcctgtagtgagaagatttgtttcgtctataagtgaaaaggctctgggttctgatcttataagaggagtccgaccggaacagcaattggtgaaggtatgtcatgctgttcagaatctgacagagggggtggattctaacagaccgtttttgtttggggtgaaacttttataaaaaatgaaggttttatcaatatttgatcttgatgttatctaaaacaaagtattcgtattcaagatcgttttatctcaggaagaataatgaaaagcattggcacaagcaaaaccataacatgcgtacaaatttctccctagaatgttcagttattaattgtagtttgtgctagatgaacatggtgactatcttcttagactaatttatgtgcttttagcacaggacaaataacctactcggtggtgcagattgtgcatgatgaacttgtaaaactgatgggtggagaagtatcagatctggtatttgcaaaaagtggccccacagtaatcttactggcaggcctgcaaggtgttgggaagactactgtttgcgcaaagcttgcattttacctgaagaaattggtacattcctcagctttctagttcaagcatctagtaggatatatattctgaacaacctatagatacttatgccagagttaggtgacagggaaagagttgtatgctggtcgctgcagatgtttacaggcctgcagccattgatcaactcactatacttggtgaacaggtacttgatgaacccttaactactacaatgagctgcctgtttgacatataagaattgtgcatagcagctgtataacatgtaccacagtcccccagatcgttctgatacttaaagaagagtcaaacccatcatgccacaattttcttttgaatgggcactactatagtttgtcctgactcctgaggtgggaacgttttgggctttatcaggtcggtgtaccagtttactcagaaggaacagaagccaaacctgcacaaataaccaagaatgccgtggaagaggccaaaagaaagaatattgatgccattgtaatggatactgctggaagactgcaggtcagtcttctgtagttctgtgcattgcctgctcgtttttcagttgatagcttgacatgtcactaccttgtacagaattttgatctacctagttctaagctactatatatttacacaaaatagcaatacaattgtttcagttcacattaacagaacttcctatgatttaactagcatctttatctcattgctatgccattcagattgacaaatcaatgatggttgaattgaaagaagtgaagaaggcagttaatcctacggaagttctgcttgttgttgatgctatgactggacaggaagctgcaggtatgcaactgttccacttgctatttaagtccctctttttgctactaaaggccaacactatttgttcgtatagcagaaatgcaacgaacaaccagaattttttcaacggttctcaaattctactatatgacaaattcttacagcgcgacatgttctatctgctatatttatacgagcttaagaagtattattgtttgatagagttgcaacagccacttacaatacttctctgagatgcagcattggtcaccaccttcaatattgagattggtatcactggtgctatattgactaaactggatggtgattcgaggggtggagcagcactaagtgttaaagaggtccttatttgccagaaaactttcctaccatcatatctacaaatgcttctgccacttttatatttttgctttgaagttactctgcatctatgttggtcaaaactgcaaattcctattgtccacatgcttctttcatcaattgacaatttactgcaaatctccgcactagtcttctcacttttatgctgtatttatataaaaaaaatctagtgtttatcatctggctacctacttgaatgtatatacggtcaacattaaatcgttcgtagtaagctgtgtttgcatgcttgctgctttgcccttcaacgaatattaatgcttaacggaccatgcaggtgtctggaaagcccatcaagtttgtagggcgtggagaacgaatggaggaccttgagcttttttatcctgaccgtatggcacaacgtgttttgggaatgggcgatgtactttcatttgttgaaaaagcacaagaagtcgtaagtagcttcctgtaaaatcccccctcaatttcttgtcctaatcagtaaggtgatgatgctatggtgtttatatgatgttgcacatagatgcgtcaagaagatgctgtagaattacagaagaagatcatgagtgcaaaattcgacttcaatgacttcctaaagcaatcacagaatgttgcaaaaatgggttccatgagccgtgtagttggaatgattccaggcatgaacaaggtacatgaatctgaggaattcatttattctttcaagtctgacaatatcccacttcattatgtttacatttcaaatgaaaaatggcagaacttgatatcagttctgattctaaataggttactcctgcacaaattcgagaagccgagaaaagacttgcatttgtggagtctatgatcaatgcaatgactgccggtatgttactcgtgattctaggactgttgctaattgctatacaaccaaatgaagcttactacgttgtttccatgggtaatagacctagacacctaattgcatgtattctggcatgagcagaggaaagggaaaagccagaattactggctgaatcacgtgacaggaggataagagtggctgaagagtccggaaagagtgaacaagaggttcagttgtaatttctgtcttctctttgttaaaaaacaatcacaatattttttgctcattccagttaccatggagctgacgcgtgcacacgcacacacacattgccgtttttcactatcaggtgagccagttggttgcccagcttttccaaatgcgtgctcagatgcagaagctgatgggtgtgatgaccggacaagaagcacttccaggcatggggaatctcatggaatctcttaacgccgatgagaaggtgataatctaacaatgcttcgggtggtgtgggtgatttggttcactacagtttggctcggttacttacggttgcctgtatttgttgtgcatcatgatcattcaggcacctcctggcactgcacggcggaagaggaggcacagcaagacgaggcagagggagctggatgcagtccctagttcttgagctggtgagcgttgtagttcagagttactgctcttttgcttcagagacccggatctgagaaaaaagagatgaaaaaaaaatgttgtcttgctaccttttttagtttgtacgtaggagatctgcaggaagttcataggaaacagtaatttcctaccaaattgtaatgttacttagccagtcctactcagcaatgcaatcggttcactcgaatgctcggactttttacattacattaatcatgaatgtatatgttgtagaaggatcaggttcatttcaaaacttc</dnaseqindica>|
| + | * Biotechnology Research Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189430.1 RefSeq:Os11g0153600]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Zhang, Fantao, et al. "YGL138 (t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice." Rice 6.1 (2013): 1. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | <br><br> |
| − | [[Category:Japonica Chromosome 11]] | + | </references> |
| − | [[Category:Chromosome 11]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]] |
