|
|
| (5 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os04g0479000''''' was reported as '''''CRC1''''' in 2013 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os04g0479000|
| |
| − | Description = Similar to HPV16 E1 protein binding protein (Thyroid hormone receptor interactor 13) (TRIP13 protein)|
| |
| − | Version = NM_001059626.1 GI:115458981 GeneID:4336167|
| |
| − | Length = 4493 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0479000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os04g0479000''''' '''<=>''' '''''CRC1,OsCRC1''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * '''''CRC1''''' colocalizes with ZEP1, the rice SC transverse filament protein, to the central region of SCs in a mutually dependent fashion. Consistent with this colocalization, '''''CRC1''''' interacts with ZEP1 in yeast two-hybrid assays. |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | * '''''CRC1''''' is essential for meiotic DSB formation, '''''CRC1''''' Is a Prerequisite for Abnormal Chromosome Entanglement and Fragmentation in rec8 Meiocytes. |
| − | AP = Chromosome 4:24354025..24358517|
| + | * '''''CRC1''''' interacts with HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 (PAIR1) in vitro, suggesting that these proteins act as a complex to promote DSB formation. |
| − | CDS = 24354025..24354244,24354368..24354437,24354950..24355056,24355141..24355208,24355666..24355769<br>,24355867..24355971,24356124..24356213,24356291..24356366,24356601..24356670<br>,24357108..24357178,24357254..24357344,24357501..24357628,24357856..24357864<br>,24357945..24357965|
| + | * PAIR2, the rice ortholog of budding yeast homolog pairing1, is required for homologous chromosome pairing. The searchers found that '''''CRC1''''' is also essential for the recruitment of PAIR2 onto meiotic chromosomes.<br><br> |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008397:24354025..24358517
| + | [[File:Os04g0479000.png|center|thumb|727px|'''Figure 4.''' ''(A) Comparison of meiotic chromosome behavior in rec8 and rec8 crc1. Bars = 5 mm.(B).Immunostaining for gH2AX (red) in the wild type and crc1-1 at zygotene. Chromosomes were stained with 4,6-diamidino-2-phenylindole (DAPI;blue). REC8 signals (green) were used to indicate the meiocytes. Bars = 5 mm.<ref name="ref1" />.'']] |
| − | source=RiceChromosome04
| + | |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008397:24354025..24358517
| + | |
| − | source=RiceChromosome04
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China |
| − | </gbrowseImage2>| | + | * Key Laboratory of Crop Genetics and Physiology of Jiangsu Province/Key Laboratory of Plant Functional Genomics of Ministry of Education, Yangzhou University, Yangzhou 225009, China |
| − | CDNA = <cdnaseq>aatccaaaaaccctagcggagaaatctctcccctcaccgtcccgcgcgctgctcggccgccatgagcgcccccatggaggtctccttctccgcgccgcctcctccggatgcggcatctgctgccgccgcggccccatcgctggtgcccgccgtgtcggcggcggcggtggcggcgaccaccgtttcctgctcgccgcagccaccgacggggtcgccctcgttgcagttgaagtgcttctgcacgccactagcacagctcgagccgaggacgtctgcgctgcggtggagaggatgttagaagctcgaagcttaagctatgttgatggtcctgtcccgattcctaatgatgatccttttcttcttgcaaatgttaaaaggatccaaatctgcgacactgatgagtggactgagaatcacaaagttctgttattttggcaagtcaggcctgttgttcatgtgttccagttgagcgaagatggtccaggtgaggagccgggtgaggacgatacactctctagcttcaatgagtgggctctgcctgccaaagaatttgatgggttgtgggaaagcttactctatgaagttggtctcaagcagaggttgctgagatatgctgctagtgctttgctgtttactgaaaagggtgtagacccatgtcttgtttcctggaacaggattgtacttttgcatggtccacctggaacaggaaagacttccttgtgtaaagcacttgctcaaaaactttccattcgcttcaagtcaaggtattccatgtgtcaattgattgaagtcaatgcccattcactgttcagcaagtggttttctgaaagcggaaaactggtggccaaacttttccagaagatccaggagatggtggaagaagaaagcaacctggtatttgtattgatagatgaagttgaaagcctagctgctgccagacaggctgccatatctggatctgaaccttcagattccataagggttgtaaatgcattacttacacaaatggacaaactcaagtcttggccaaatgttatcattttgacaacatcaaatatcaccacagctattgatattgcatttgttgatagagcagacatcaaggcatacgttggacccccaacccttcaagcacgatacgaaattttgaggtcatgcttacaggaacttttgcgagttggaattcttacacatactcagggtggcaattctctctggcctactccataa</cdnaseq>|
| + | |
| − | AA = <aaseq>NPKTLAEKSLPSPSRALLGRHERPHGGLLLRAASSGCGICCRRG PIAGARRVGGGGGGDHRFLLAAATDGVALVAVEVLLHATSTARAEDVCAAVERMLEAR SLSYVDGPVPIPNDDPFLLANVKRIQICDTDEWTENHKVLLFWQVRPVVHVFQLSEDG PGEEPGEDDTLSSFNEWALPAKEFDGLWESLLYEVGLKQRLLRYAASALLFTEKGVDP CLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFKSRYSMCQLIEVNAHSLFSKWFSE SGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARQAAISGSEPSDSIRVVNALLT QMDKLKSWPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLR VGILTHTQGGNSLWPTP</aaseq>|
| + | ==References== |
| − | DNA = <dnaseqindica>1..220#344..413#926..1032#1117..1184#1642..1745#1843..1947#2100..2189#2267..2342#2577..2646#3084..3154#3230..3320#3477..3604#3832..3840#3921..3941#aatccaaaaaccctagcggagaaatctctcccctcaccgtcccgcgcgctgctcggccgccatgagcgcccccatggaggtctccttctccgcgccgcctcctccggatgcggcatctgctgccgccgcggccccatcgctggtgcccgccgtgtcggcggcggcggtggcggcgaccaccgtttcctgctcgccgcagccaccgacggggtcgccctcggccgacgacaggatcctcgtttcaggtaggttgcctcggttacctcccgttctctagctatgcacggttgttgtggctagcgaatgctgaatcatggtggctgtgtttttttaaaccctgtgattgcagttgaagtgcttctgcacgccactagcacagctcgagccgaggacgtctgcgctgcggtggagaggttggtgtttatctcattttctgttaatttttcgggttgttgatgttgtgagcaacgtcaggcgggttggtttagaaaatggtggttttctagaaatggggagcgattgagtttgagcattgatggaaaacggtgaagctgaacactgaagcaacatggatttgggatatagtatattttctgggtatctaatgcataaaaaacctgggtcttctgtatgttctgaagttacagaaacttgtggtactgtaactagtgaaccaatgcaagtattaagagtgagttgtaaaatgcatcaaccgcagctttgtggaagccttggtggtgccatggcagccttgggcagaggcatcaatggttgctgcaagggacttaacatagtttccggaagagagtttctggattttatttattcgctcacataatttgcgtgaatactagcatcttattcatgagccattagcagctgttatttctcgaacttaatatctactacttgctttatcaatcaggatgttagaagctcgaagcttaagctatgttgatggtcctgtcccgattcctaatgatgatccttttcttcttgcaaatgttaaaaggatccaaatctgcgacactggtatggatctacttagcctggcaattgtgctttctttcttgacctcattgcttatgcatctcttggtacttgccttttatgtagatgagtggactgagaatcacaaagttctgttattttggcaagtcaggcctgttgttcatgtgttccaggtatgcactataaataatgttagctgccaactgcctaaacctcttccacctctttcaagaactgtggttatgaattttgtgttgacatgttggctatcgcgctttattgataaattgcatgtggaatttcttaatactgtacttaattttctcatttgttttctctagagtagagacttccaaaggtacattctacaggtgcatttaactatttgccacccatatctcaatgacatgtgggtccacatgtgtctatgacatgtgggtccagttaattgccacatttaaaagtggcaaatagttaaatatctcacattctacatcctaatgtcttaatactgatccataggaatatgttctttccaatagatggattgctttatgttgtttattggattgaagagacattgatctaattcaaatgtatttacctcaatctggtttgcttatgctgcagttgagcgaagatggtccaggtgaggagccgggtgaggacgatacactctctagcttcaatgagtgggctctgcctgccaaagaatttgatgggttgtgggaaaggtttggtttacattcaatttaaccttaactagtacaattccttgaagaagtacactatccttttctgttgtgttggtaacatcataagtctttgcagcttactctatgaagttggtctcaagcagaggttgctgagatatgctgctagtgctttgctgtttactgaaaagggtgtagacccatgtcttgtttcctggaacaggtaagcgtcttaagaaacacctagggtggaaatgcctgagctctttacgagaaaataggtcatcttaagttacctgtagttgcatatgttaaattgtacactgatttttcattcttttggttgttttgattttctttgtcaacacattgcaggattgtacttttgcatggtccacctggaacaggaaagacttccttgtgtaaagcacttgctcaaaaactttccattcgcttcaagtcaaggtttgtgctgaatgagatacaatactgtataattttggttaatgaatgtgcgttattcatttctataattcttttaggtattccatgtgtcaattgattgaagtcaatgcccattcactgttcagcaagtggttttctgaaagcggaaaactggtatgccttttttgtgctaaccgaaagactgttatatgcatgtgatgattcatatgctgaatgctattatctaatgacacttggcttgctcatgattttgcatgtggtggcttttattcttatgattcatttcgacctttttatactggactttacctggtataattagccaatggatatgcatctttattcgcatcttaaattccgtgtactctgtgcaatccttcattttaggtggccaaacttttccagaagatccaggagatggtggaagaagaaagcaacctggtatttgtattgataggtacgtcagtacgtccttgagcagtgacaagttaacactatatattgacaactaggcaactagcccaaagtgatgaaatgactatacgagtcttcactgtatggtctgtgaagtgattagatgagtccaccaggttcattttgtatatgaatagtttaggaaggttaattttcatgtcaaattgtcaatttggctgagttcaatttaagcttccattatctaaaaatgttgaattgtcaatcacgtttctccttaaagatacacccctatactaatgattatgtatcaaccttggccacctgtttgacatatgactatatgagcgaaggatccttacaatctatattatactctttcacatggagtttgatttgctcgatgttgtatatattgaatcttaaccttatgtgtgttattattgatttttcaatttctagatgaagttgaaagcctagctgctgccagacaggctgccatatctggatctgaaccttcagattccataagggtaaagtttttatttttccatgtaccaatttatcgtgaaatgctcatacctattccttcatcgtgcaacctgcaggttgtaaatgcattacttacacaaatggacaaactcaagtcttggccaaatgttatcattttgacaacatcaaatatcaccacagctattggtattaagttctgcctttttatacctttatgaagttagtaaatcgtccatctcctgatgatctaatttatcatttttgtgagcgaaagacacttctctagtctatagtgatatttgctctacagggagtaaatcctaactcttctctagtttgcagatattgcatttgttgatagagcagacatcaaggcatacgttggacccccaacccttcaagcacgatacgaaattttgaggtcatgcttacaggaacttttgcgagttggaattcttacacatactcaggtatttgttctgtgcttgccaacttggttgatgcctatggtgcccaccttttcattattattatccaagcaccagagttgctctggattactctgtccatggggcacttgattagagcaaacaattcttttggatcttagttgatgaatcgatcaaaacttctccacaagactttcaactttcttgtaacccctgaatgctaaataaactattgtcgcaaattgtagggtggcaattctctttgccttttgagttattttagcctgatggagaaccagcactgtcctgaggtcgcagatcctcatggttcggttcatctctctggcctactccataaagctgcagaaatatgtgaggtaaataacataactgatacatgcatcatcaacagtaatcaagacattcccatcaggctgacagcagcatttcttttctgctacagggattaagcggtcgaacattgaggaaacttcctttcctggcacatgcttctgttgctaacccttcatgctgcgatgcctctgctttcctgcacgctttgatacagactgctcaaagagagctctccgagtcgcgtggttgattgattccatgccggtcacttcgaagagcaaattgctaacagtttcaattccagagatagtttttaagggacctcaaagatagctggaagctaattcagagcctggtgctaaataccggcagacccctgcaatctttaggtttagaacagcagaagtccagaatagatctgattgttgctttgatacttttgtgttttgtagattattatatatatagtatattgtgcctcgaaggatgtcactgagttaaaccagaaacaagacttgattcgagttgctgaatgtttaaaagcatatgttatcac</dnaseqindica>|
| + | <references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059626.1 RefSeq:Os04g0479000]|
| + | * <ref name="ref1"> |
| − | }}
| + | Miao C, Tang D, Zhang H, Wang M, Li Y, Tang S, Yu H, Gu M, Cheng Z. Central |
| − | [[Category:Genes]] | + | region component1, a novel synaptonemal complex component, is essential for |
| − | [[Category:Japonica mRNA]]
| + | meiotic recombination initiation in rice. Plant Cell. 2013 Aug;25(8):2998-3009. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | doi: 10.1105/tpc.113.113175. Epub 2013 Aug 13. PubMed PMID: 23943860; |
| − | [[Category:Japonica Genes]]
| + | </ref> |
| − | [[Category:Japonica Chromosome 4]] | + | </references> |
| − | [[Category:Chromosome 4]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
